Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g1922 ATGGACGACCACCACAATCCCCACCACCACCACCACCACCACCATGAGCTCCCCCCATTCCCCTCCGCCGCCGCCATTCTCCACTCTCCTCCTCCTCCTCAAAATTCATGTTATCTCCCACCTATTCTTTCTCAAACTTGCTTGGGATTCTCCTCCTCCGCCCCACAATCCTATTTTTACTCAAATCCTCCTCCTCTACATGAACAACTTCCATCCCATTTCCCACCTTCTTCCACCTTCCTCACTTATGGTTTCAATGAGCCAACTAATTCTCTATTCCCTAATGATGAAGGAAGAAGGGCTATGGATGCTTGGAGTACTAAAGTCGCTCGTACCAACCGAAGACTCGCCCGCCAAAGAACCCTTACTTTAACCCGAACCACTTCTTCTTCCTCTTCTGCAGCTTATAATGGTTGTAATAATGATGAATATTCTAAGGGTTTAACAATAACCCACTTCCCAAACACTGATCCCTCTCACAATAATCGCAATCTTTTTACCTTTTGCACTCCAGATAACAAGATTTTGAGAATGCTGCTGAAGAAGGAGCTGAAGAACAGTGATGTTGGATCTTTGGGCAGGATTGTCCTCCCCAAGAGGGAGGCAGAAGAGAACCTTCCATTTCTCACTGATAAGGAAGGTATCCAAATTGTGGTGAGAGATGTGAACTCAATCAGAAAATGGACCATGAAATACAAGTACTGGGCAAACAACAGAAGTAGAATGTATGTTCTGGAGAACACAGGGGATTTCGTTAGACAAAATGGTCTGTTGATGGGAGATTCAATGACACTATACGAGGATGACTGCAAGAACCTCTACGTGGCGGTTGAAAAAGGTGAGAATCATTCGAGAACGGAAGAAAATTACAAGCAGCAGCAGCAGCAACAACAACAGCAGTGTGGTAATTTGTCAAACATGGAAATTAAAGACGAAGAAGAAGATGCTTCATTAGCTTTGTTGATCGAAGAGCTCAAACACAAAGCCGACGACGACCCCCACGCGCCGCCCTGCTGCAACGACTATTCCTACTTCACCGCTGCTACTATGATGGGAGGTGCTACAATAAAAGGGAATTATAATAACATTAATAATAACAATAATGCGTCGACTAATACTAATTACAAGGAAGTAATGGAAGATCTGCAGGGGATTAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATGGGAATGGGTTTGAAGATTGCTTTGGAGGGCTTGATACTCTGCCGGAAGTAACTGGATTCAAGTTCCCTCTCTTTGACTATTTCAGCAACAATGATAGAACGTGA 1311 42.56 MDDHHNPHHHHHHHHELPPFPSAAAILHSPPPPQNSCYLPPILSQTCLGFSSSAPQSYFYSNPPPLHEQLPSHFPPSSTFLTYGFNEPTNSLFPNDEGRRAMDAWSTKVARTNRRLARQRTLTLTRTTSSSSSAAYNGCNNDEYSKGLTITHFPNTDPSHNNRNLFTFCTPDNKILRMLLKKELKNSDVGSLGRIVLPKREAEENLPFLTDKEGIQIVVRDVNSIRKWTMKYKYWANNRSRMYVLENTGDFVRQNGLLMGDSMTLYEDDCKNLYVAVEKGENHSRTEENYKQQQQQQQQQCGNLSNMEIKDEEEDASLALLIEELKHKADDDPHAPPCCNDYSYFTAATMMGGATIKGNYNNINNNNNASTNTNYKEVMEDLQGINNNNNNNNNNNNNNNNNGNGFEDCFGGLDTLPEVTGFKFPLFDYFSNNDRT 436
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 36775929 36779575 - CrPI670011_04g019220.1 Cre04g1922 496226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g1922 436 ProSiteProfiles B3 DNA-binding domain profile. 180 281 IPR003340 GO:0003677(InterPro)
Cre04g1922 436 Gene3D - 169 294 IPR015300 -
Cre04g1922 436 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 120 305 IPR044800 GO:0003700(InterPro)
Cre04g1922 436 SMART B3_2 180 281 IPR003340 GO:0003677(InterPro)
Cre04g1922 436 MobiDBLite consensus disorder prediction 1 28 - -
Cre04g1922 436 CDD B3_DNA 179 275 IPR003340 GO:0003677(InterPro)
Cre04g1922 436 Coils Coil 375 395 - -
Cre04g1922 436 SUPERFAMILY DNA-binding pseudobarrel domain 179 277 IPR015300 -
Cre04g1922 436 Pfam B3 DNA binding domain 182 277 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1922 Cre-Chr4:36775929 Cre09g0880 Cre-Chr9:8795250 9.50E-29 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53532 PF02362 B3 7.30E-16 CL0405 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g1922 K09287 - csv:105436043 505.368