Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre04g1939 | ATGGAAGCCGCTGCCTCCGACGGCGAAAATCACAACCAGAATAATGATAATATTAACAAAATTAGTAACTCAAGTGAGGGTCTTAGCAAGCCCAAGCGCCAGATGAAGACTCCGTTTCAGCTTGAAACCCTCGAGAAAGCCTATGCTTTGGAGACTTACCCATCTGAGTCGACAAGGGCTGAACTATCGGAGAAATTGGGGCTCACCGATCGGCAATTGCAGATGTGGTTTTGTCATAGGAGGTTGAAGGACAAGAAGGAACCGGCAAAGAAACCCCGGAAGGTGGCACCCGCACCCCCCTTGCCGTTGCCTGATTCTCCCATTGACGAATTGAGAGTAGTGGCCGAGCCGGGTAGTGATTACGCTTCAGGGTCGGGCTCGGGTTCGAGTCCATTTGGTGATGTCGGGTTGCGTAATGTGGTACCTAGAAGTGTTGGAGATGATATGCCGATGATGAGAAGGTATTATGAACCTTCACGGTCTGTTATGGAACTTAGAGCTATTGCTTGTGTGGAGTCGCAGTTAGGAGAACCATTGAGGGAGGACGGACCTATTCTAGGGATTGAATTTGATCCACTACCACCTGATGCTTTCGGAGCACCTATAGTGGCAGAACAGCAGAAGCGATCTGGACATTCGTATGGGGACAAATATGAACAACGGGATACAAAATCAAATAAAGTGACTGCAAGGGGATTCCCCGAATATCCATTTATGCCAGACCAGTCTAATATTAGAGCTGATGCGTATGGTCCAGTTTCCCAACCACATTATCCAGATTCATTAGGCGAGGTTTCAGCAGCCAGGACACCATCATTTTTGCTTGGTCATGAACAGTTGAACAGGAGCCATAATTACCATAATCAGGTCTCAAGGGTTCGTCTTCTGTCTCAACAGGAGAAGCAGGGAGTTGCAATTCCATCTCCTGCTGAAGACAATGCATTTGTCCCTCCAAGGGATTCTTTTGCAAGTATCAGAATCAATTCTCAGTTTACTGAACACCCAATTGTTGGACAAGAAAGTTCATATGTGTTGCCTGATGGGCATGTTTTTCCAAACGATGTCATGATTAGGATGGAAAGAAAACGCAAGAGTGAAGAAGCTCGTCTGAGTAAAGAAGCTGAAGCCCACGAAATAAGAATGCGGAAAGAGCTTGAGAAACAAGATATTTTGAGGAGAAAGAATGAAGAACGAATGAGGAAAGAAATGGAAAAGCAAGATCGTGAAAGAAGGAGAGAAGAGGAGAGGTTACTGCGAGAAAAGCAGCGGGAAGCCGAGAGATTGAAGCGTGAGGAAAGACGTGAACATGAACGGAGGGAAAAGTTTCTGCAGAGGGAGTATGTGAGGGCTGAAAAGAGGAAACAAAAAGAAGCTATTCGCAAAGAGAAGGAAGCTGTGAGACGCAAAGCTGCTATTGAGAAGGCTACTGCTCGTAGAATTGCCCGTGAGTCTATGGAGCTTATTGAGGATGAACAGCTTGAACTGATGGAACTGGCTGCTGCAAACAAAGGATTACCCTCCATATTAAGTCTTGATCATGACACTTTGCAGAATCTTGAATCTTTCCGAGATTATCTAGGTGCATTTCCACCCAAGTCTGTGCAATTGAAAAAACCTTTCGGCATTCAACCTTGGATCAATTCAGAGGAGAACATCGGTAACCTTCTCATGGTCTGGAGATTTTTTATTACATTTTCTGATGTTCTAGAGCTGTGGCCCTTCACTCTTGATGAGTTTGTTCAAGCTCTTCATGACTATGATTCAAGATTACTGGGTGAGATTCACATTTGCCTTTTGAGACTGATTGTAAAAGATATTGAAGATGTTGCAAGAACACCTTCTGCTGGAATGGGAATGAACCAGAATGGTGTTGCCAACTCTGGAGGTGGACACCCACAGATTGTTGAAGGGGCATATGCGTGGGGGTTTGACATTTGCAACTGGCAGAAGCATCTAAACCCGTTAACATGGCCTGAAATATTTCGACAATTAGCACTATCAGCTGGGTTTGGACCTCAGTTGAGAAAGAGGAGTTTGGCAATGTCTGAAATGCGTAGCAATGATGAGGCTAAATGCGGTGAGGACGTAGTCTCTACTCTACGCAATGGTTCAGCAGCTGAAAATGCATTTGCTATCATGCAAGAGAAAGGTTTGTTAGCCCCTCGGAGATCTAGGCATCGGCTAACTCCTGGAACTGTGAAATTTGCTGCTTTTCATGTCCTTTCCCTAGAAGGCAGTGAGGGGTTAACAGTACTAGAACTTGCAGAGAAGATACAGAGATCTGGACTTAGAGATCTGTCTACAAGCAAGACACCAGAGGCTTCCATTTCTGTTGCTTTGACAAGGGATACTAAGCTTTTTGAAAGAATAGCTCCTTCCACATATCGTGTACGAGCTCCCTATAGGAAGGATCCAGATGATGCCGAGGAAATACTTTCAGTAGCCAGAAAGAAAATTCAGGTATTCCAGAATGGGTTTTTGGCTGGAGAAGATGCTGATGATGTTGAAAGAGATGAAGAATCTGAATGTGATGATGTTGATGAAGATCCTGAGGTTGATGATATAGCGACAACTTCCTTGGTGAATGAAGATATTAGCAAAGGAGATGCTAACTTAGGAGTTGAGAATGAGAACTTATGTCATGATATTGCTGGAAATCCTCAAAATGAAATTGCCAAAGATATATCGCCGTTCCCCCTAAGTGGCTCTAAGGACACACAATATTTAAATATACCTACAGAGCAGTATGCTGCTGTTGATGAGACTACTATTAGCGATCTTGATCAAGAAAATATGGAGATTGATGAAAGCAAGGAAGGTGAATCATGGATTCAAGGACTTACAGAAGGTGAATATCATGATCTTAGTGTTGAGGAGCGCTTGAATGCCCTTATTGTCTTGACCAGCATTGCAAATGAAGGAAACTCTATTCGCCTTGTTCTTGAGGATCGCTTGGAAGCTGCAAATGCTGTTAAGAAGCAAATGTTGACAGAGGCTCAGATTGATAAATCTCGCCTAAAAGAAGAGATCATTACTAAATCTGATTTTCCAATTCATATAGTGAGCAAGGTGGAAACTGAACTCAATGGTTCCACTATGGATGGTGGGCAAAGCCCTTTTCCTGTTACCGACAATAAGAACAATGAAACAACCCCAAGCACTGCAGAAAACTTTGGTAGTGTGCCTAATGAGAGGGGTACTTTAGTGCCAGATCTTTTCCCAGGCCCAGATAATTTCTTGGCTCAGCAATGTGGACATGCTTCAAAGAGGTCACGTTCACAGTTAAAATCTTATATTGCCCATAGAGCTGAAGAAATGTACACATACAGGTCTTTGCCTTTAGGTCGAGATCGTAGGCGTAATCGGTACTGGCAATTTGTTGCATCTTCCTCAAGCAATGATCCTGGTTCTGGGAGAATCTTTGTTGAAATGTATGATGGAAAGTGGAGGCTTATTGATTCTGAAGAGGGTTTTGATGCTCTTTCGTTGGCTTTGGACACACGTGGGATTAGAGAATCACACCTACGCATAATGTTGCAAATGATAGAGACATCATTTAAGGAAAATGTTCGGAGGAATCTGCAGTGTGCCAATGATATGGTTCGAAGTGGAATTACTCCTAAAAATGAAAATGATGATTCGAGTTCTAGTCCTGATTGCAACACTGGTTTTAACAGTCCTAGCAGTACTGTTTGTGGATTAAATTTGGATACAATGGCAACATCATCTTCGTTCAGAATTGAGCTTGGGAGAAATGAAAACGAAAAGAAGGCTGCATTTAGAAGGTATCAAGACATGCAGAGGTGGATGTTAAGAGAGTGCTTTAGCACATCAACACTGTGTGCCTTGAAATTTGGAGAAAAACGGTGCACTTCAGTGTTGGACATTTGTGATTCTTGTCTGTGCTTGTTTGATTCTCAACATTCTCACTGTCCTTCGTGCCATCAAACTTTTGGCATTAGTGGGAATGATATTAATTTTCTAGAACACATACGTCACTGTGAGAGGGAAAGGAAGTCTAACCCTTTGGATACACACGTTTTAGATGCATGTCTTCCCCTCAAAAGTAGGTTGCTCAAGGCTCTCCTAGCTTTCATTGAGGTACATGTTCCGTCGGAAGCTTTTCAATCGTTTTGGACAGAACATAGGAAAGATTGGGGTGTCAGGATGAAATTATCATCATCTATTGAGGAGCTTCTACAGATATTGACCCTGTTTGAAAGTGTAATTAAGCGGGACTTTCTAAAATCAGATTTTACTACAACTGACGAGCATCTGAGCTCATGTTCCATCTCTGGGAATATTATACATGACCCAGCAGATATTGGGTCTGTTCTTACATTACCATGGATTCCACGGACTAGTGCAGCTGTTGCTTTAAGGCTTTATGAGGTAGATGCATCAATTTATTATATTGGATGTGAGAAACCAGAGCCTGACCAGGATAAGGAAGTTGGAGAACATATAAACTTTTCCAGTAGATATGTCCAGGTTAAGAATGATGAACGGACTAAACTAAACGAGTTGGATTATGATGATCTGATGAAGAATGAAAACTCCGCCGATCCAAAAAGTTTAAGGAACAGCTACAAACGTGGTCGAGGTAGTCGAGATTATGGACGTCGTAGAAAGTGGCAGAAAAAAGTTAATGGATCCAGATCTGGCCGGGTCCGGCAAAATGTCAAGAGTAATGAGAAGATGAATCAAGAACAGAGGGAGCTGGGACAAGGAACACAGGTTATGGGTGTACGAGGCCGCCGTACGGTAAGGAAGAGAAGGGCTGAGAAGAGCACTCCAGATGAAGGACTGTTGGGGCTGGTGCCTGGTAGTAGTACTCAGAACATAGATGAATCCCCAAAAGATTATCTAGGGGAATGGGAGGACGAAAAAATGGATAGGTTTGTCGATATGGAAGATGAAGAGAACGTGATGGAAGATGAAGAAAATGTGATGGAAGATGAGGAGAATGAAGAGAACGTAAACAACGTAGAAGCGATGGACTCCGATGATGATGGCCAGGGAGTTGGGTATGAGCAAGGGGGCTGGGAGTTTGGCTTTGAAGGCACTTCCAACAGATGGAATGGTGATTTAGGGTTGGGTAGCGATGAGGATGTGGATCTATCTGAGGACTACAATGGCACTGAAGAAGGGGGAAATGATGATATAGAGGAGTTAGATGTTGATAGCAGCGAAGAGTCGGATTGTTCACCAAATAGGATAGGCAACAATGGTGGAGGAGAATCCGCTGTTTCAGACGACTATAGTGATTAA | 5271 | 43.29 | MEAAASDGENHNQNNDNINKISNSSEGLSKPKRQMKTPFQLETLEKAYALETYPSESTRAELSEKLGLTDRQLQMWFCHRRLKDKKEPAKKPRKVAPAPPLPLPDSPIDELRVVAEPGSDYASGSGSGSSPFGDVGLRNVVPRSVGDDMPMMRRYYEPSRSVMELRAIACVESQLGEPLREDGPILGIEFDPLPPDAFGAPIVAEQQKRSGHSYGDKYEQRDTKSNKVTARGFPEYPFMPDQSNIRADAYGPVSQPHYPDSLGEVSAARTPSFLLGHEQLNRSHNYHNQVSRVRLLSQQEKQGVAIPSPAEDNAFVPPRDSFASIRINSQFTEHPIVGQESSYVLPDGHVFPNDVMIRMERKRKSEEARLSKEAEAHEIRMRKELEKQDILRRKNEERMRKEMEKQDRERRREEERLLREKQREAERLKREERREHERREKFLQREYVRAEKRKQKEAIRKEKEAVRRKAAIEKATARRIARESMELIEDEQLELMELAAANKGLPSILSLDHDTLQNLESFRDYLGAFPPKSVQLKKPFGIQPWINSEENIGNLLMVWRFFITFSDVLELWPFTLDEFVQALHDYDSRLLGEIHICLLRLIVKDIEDVARTPSAGMGMNQNGVANSGGGHPQIVEGAYAWGFDICNWQKHLNPLTWPEIFRQLALSAGFGPQLRKRSLAMSEMRSNDEAKCGEDVVSTLRNGSAAENAFAIMQEKGLLAPRRSRHRLTPGTVKFAAFHVLSLEGSEGLTVLELAEKIQRSGLRDLSTSKTPEASISVALTRDTKLFERIAPSTYRVRAPYRKDPDDAEEILSVARKKIQVFQNGFLAGEDADDVERDEESECDDVDEDPEVDDIATTSLVNEDISKGDANLGVENENLCHDIAGNPQNEIAKDISPFPLSGSKDTQYLNIPTEQYAAVDETTISDLDQENMEIDESKEGESWIQGLTEGEYHDLSVEERLNALIVLTSIANEGNSIRLVLEDRLEAANAVKKQMLTEAQIDKSRLKEEIITKSDFPIHIVSKVETELNGSTMDGGQSPFPVTDNKNNETTPSTAENFGSVPNERGTLVPDLFPGPDNFLAQQCGHASKRSRSQLKSYIAHRAEEMYTYRSLPLGRDRRRNRYWQFVASSSSNDPGSGRIFVEMYDGKWRLIDSEEGFDALSLALDTRGIRESHLRIMLQMIETSFKENVRRNLQCANDMVRSGITPKNENDDSSSSPDCNTGFNSPSSTVCGLNLDTMATSSSFRIELGRNENEKKAAFRRYQDMQRWMLRECFSTSTLCALKFGEKRCTSVLDICDSCLCLFDSQHSHCPSCHQTFGISGNDINFLEHIRHCERERKSNPLDTHVLDACLPLKSRLLKALLAFIEVHVPSEAFQSFWTEHRKDWGVRMKLSSSIEELLQILTLFESVIKRDFLKSDFTTTDEHLSSCSISGNIIHDPADIGSVLTLPWIPRTSAAVALRLYEVDASIYYIGCEKPEPDQDKEVGEHINFSSRYVQVKNDERTKLNELDYDDLMKNENSADPKSLRNSYKRGRGSRDYGRRRKWQKKVNGSRSGRVRQNVKSNEKMNQEQRELGQGTQVMGVRGRRTVRKRRAEKSTPDEGLLGLVPGSSTQNIDESPKDYLGEWEDEKMDRFVDMEDEENVMEDEENVMEDEENEENVNNVEAMDSDDDGQGVGYEQGGWEFGFEGTSNRWNGDLGLGSDEDVDLSEDYNGTEEGGNDDIEELDVDSSEESDCSPNRIGNNGGGESAVSDDYSD | 1756 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 36902341 | 36914450 | - | CrPI670011_04g019390.1 | Cre04g1939 | 496243 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre04g1939 | 1756 | ProSiteProfiles | 'Homeobox' domain profile. | 27 | 87 | IPR001356 | GO:0003677(InterPro) | |
Cre04g1939 | 1756 | MobiDBLite | consensus disorder prediction | 206 | 238 | - | - | |
Cre04g1939 | 1756 | MobiDBLite | consensus disorder prediction | 1 | 38 | - | - | |
Cre04g1939 | 1756 | Coils | Coil | 391 | 469 | - | - | |
Cre04g1939 | 1756 | MobiDBLite | consensus disorder prediction | 1203 | 1222 | - | - | |
Cre04g1939 | 1756 | PANTHER | HOMEOBOX-DDT DOMAIN PROTEIN RLT2 | 1 | 1756 | IPR044977 | GO:0006357(InterPro) | |
Cre04g1939 | 1756 | MobiDBLite | consensus disorder prediction | 1536 | 1551 | - | - | |
Cre04g1939 | 1756 | CDD | homeodomain | 32 | 87 | IPR001356 | GO:0003677(InterPro) | |
Cre04g1939 | 1756 | MobiDBLite | consensus disorder prediction | 1734 | 1756 | - | - | |
Cre04g1939 | 1756 | MobiDBLite | consensus disorder prediction | 84 | 107 | - | - | |
Cre04g1939 | 1756 | Pfam | Homeodomain | 30 | 86 | IPR001356 | GO:0003677(InterPro) | |
Cre04g1939 | 1756 | MobiDBLite | consensus disorder prediction | 1515 | 1535 | - | - | |
Cre04g1939 | 1756 | MobiDBLite | consensus disorder prediction | 210 | 228 | - | - | |
Cre04g1939 | 1756 | MobiDBLite | consensus disorder prediction | 1515 | 1619 | - | - | |
Cre04g1939 | 1756 | MobiDBLite | consensus disorder prediction | 396 | 416 | - | - | |
Cre04g1939 | 1756 | MobiDBLite | consensus disorder prediction | 1645 | 1756 | - | - | |
Cre04g1939 | 1756 | Gene3D | - | 21 | 97 | - | - | |
Cre04g1939 | 1756 | ProSiteProfiles | DDT domain profile. | 549 | 608 | IPR018501 | - | |
Cre04g1939 | 1756 | Pfam | Williams-Beuren syndrome DDT (WSD), D-TOX E motif | 1109 | 1181 | IPR028941 | - | |
Cre04g1939 | 1756 | SMART | HOX_1 | 29 | 91 | IPR001356 | GO:0003677(InterPro) | |
Cre04g1939 | 1756 | MobiDBLite | consensus disorder prediction | 1702 | 1731 | - | - | |
Cre04g1939 | 1756 | MobiDBLite | consensus disorder prediction | 7 | 31 | - | - | |
Cre04g1939 | 1756 | Coils | Coil | 1637 | 1657 | - | - | |
Cre04g1939 | 1756 | ProSiteProfiles | HARE-type HTH domain profile. | 731 | 800 | IPR007759 | GO:0006355(InterPro) | |
Cre04g1939 | 1756 | Pfam | DDT domain | 550 | 605 | IPR018501 | - | |
Cre04g1939 | 1756 | Pfam | WSTF, HB1, Itc1p, MBD9 motif 1 | 938 | 981 | IPR028942 | - | |
Cre04g1939 | 1756 | SMART | testlast3 | 549 | 608 | IPR018501 | - | |
Cre04g1939 | 1756 | MobiDBLite | consensus disorder prediction | 1645 | 1665 | - | - | |
Cre04g1939 | 1756 | SUPERFAMILY | Homeodomain-like | 21 | 87 | IPR009057 | - | |
Cre04g1939 | 1756 | Pfam | HB1, ASXL, restriction endonuclease HTH domain | 731 | 798 | IPR007759 | GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre02g0359 | Cre-Chr2:706959 | Cre04g1939 | Cre-Chr4:36902341 | 1.10E-07 | dispersed | |
Cre02g2596 | Cre-Chr2:39223005 | Cre04g1939 | Cre-Chr4:36902341 | 7.10E-16 | dispersed | |
Cre04g1939 | Cre-Chr4:36902341 | Cre09g1006 | Cre-Chr9:10301600 | 6.50E-52 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
53538 | PF15613 | WSD | 3.50E-13 | No_clan | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre04g1939 | - | - | - | 0.0 |