Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g1939 ATGGAAGCCGCTGCCTCCGACGGCGAAAATCACAACCAGAATAATGATAATATTAACAAAATTAGTAACTCAAGTGAGGGTCTTAGCAAGCCCAAGCGCCAGATGAAGACTCCGTTTCAGCTTGAAACCCTCGAGAAAGCCTATGCTTTGGAGACTTACCCATCTGAGTCGACAAGGGCTGAACTATCGGAGAAATTGGGGCTCACCGATCGGCAATTGCAGATGTGGTTTTGTCATAGGAGGTTGAAGGACAAGAAGGAACCGGCAAAGAAACCCCGGAAGGTGGCACCCGCACCCCCCTTGCCGTTGCCTGATTCTCCCATTGACGAATTGAGAGTAGTGGCCGAGCCGGGTAGTGATTACGCTTCAGGGTCGGGCTCGGGTTCGAGTCCATTTGGTGATGTCGGGTTGCGTAATGTGGTACCTAGAAGTGTTGGAGATGATATGCCGATGATGAGAAGGTATTATGAACCTTCACGGTCTGTTATGGAACTTAGAGCTATTGCTTGTGTGGAGTCGCAGTTAGGAGAACCATTGAGGGAGGACGGACCTATTCTAGGGATTGAATTTGATCCACTACCACCTGATGCTTTCGGAGCACCTATAGTGGCAGAACAGCAGAAGCGATCTGGACATTCGTATGGGGACAAATATGAACAACGGGATACAAAATCAAATAAAGTGACTGCAAGGGGATTCCCCGAATATCCATTTATGCCAGACCAGTCTAATATTAGAGCTGATGCGTATGGTCCAGTTTCCCAACCACATTATCCAGATTCATTAGGCGAGGTTTCAGCAGCCAGGACACCATCATTTTTGCTTGGTCATGAACAGTTGAACAGGAGCCATAATTACCATAATCAGGTCTCAAGGGTTCGTCTTCTGTCTCAACAGGAGAAGCAGGGAGTTGCAATTCCATCTCCTGCTGAAGACAATGCATTTGTCCCTCCAAGGGATTCTTTTGCAAGTATCAGAATCAATTCTCAGTTTACTGAACACCCAATTGTTGGACAAGAAAGTTCATATGTGTTGCCTGATGGGCATGTTTTTCCAAACGATGTCATGATTAGGATGGAAAGAAAACGCAAGAGTGAAGAAGCTCGTCTGAGTAAAGAAGCTGAAGCCCACGAAATAAGAATGCGGAAAGAGCTTGAGAAACAAGATATTTTGAGGAGAAAGAATGAAGAACGAATGAGGAAAGAAATGGAAAAGCAAGATCGTGAAAGAAGGAGAGAAGAGGAGAGGTTACTGCGAGAAAAGCAGCGGGAAGCCGAGAGATTGAAGCGTGAGGAAAGACGTGAACATGAACGGAGGGAAAAGTTTCTGCAGAGGGAGTATGTGAGGGCTGAAAAGAGGAAACAAAAAGAAGCTATTCGCAAAGAGAAGGAAGCTGTGAGACGCAAAGCTGCTATTGAGAAGGCTACTGCTCGTAGAATTGCCCGTGAGTCTATGGAGCTTATTGAGGATGAACAGCTTGAACTGATGGAACTGGCTGCTGCAAACAAAGGATTACCCTCCATATTAAGTCTTGATCATGACACTTTGCAGAATCTTGAATCTTTCCGAGATTATCTAGGTGCATTTCCACCCAAGTCTGTGCAATTGAAAAAACCTTTCGGCATTCAACCTTGGATCAATTCAGAGGAGAACATCGGTAACCTTCTCATGGTCTGGAGATTTTTTATTACATTTTCTGATGTTCTAGAGCTGTGGCCCTTCACTCTTGATGAGTTTGTTCAAGCTCTTCATGACTATGATTCAAGATTACTGGGTGAGATTCACATTTGCCTTTTGAGACTGATTGTAAAAGATATTGAAGATGTTGCAAGAACACCTTCTGCTGGAATGGGAATGAACCAGAATGGTGTTGCCAACTCTGGAGGTGGACACCCACAGATTGTTGAAGGGGCATATGCGTGGGGGTTTGACATTTGCAACTGGCAGAAGCATCTAAACCCGTTAACATGGCCTGAAATATTTCGACAATTAGCACTATCAGCTGGGTTTGGACCTCAGTTGAGAAAGAGGAGTTTGGCAATGTCTGAAATGCGTAGCAATGATGAGGCTAAATGCGGTGAGGACGTAGTCTCTACTCTACGCAATGGTTCAGCAGCTGAAAATGCATTTGCTATCATGCAAGAGAAAGGTTTGTTAGCCCCTCGGAGATCTAGGCATCGGCTAACTCCTGGAACTGTGAAATTTGCTGCTTTTCATGTCCTTTCCCTAGAAGGCAGTGAGGGGTTAACAGTACTAGAACTTGCAGAGAAGATACAGAGATCTGGACTTAGAGATCTGTCTACAAGCAAGACACCAGAGGCTTCCATTTCTGTTGCTTTGACAAGGGATACTAAGCTTTTTGAAAGAATAGCTCCTTCCACATATCGTGTACGAGCTCCCTATAGGAAGGATCCAGATGATGCCGAGGAAATACTTTCAGTAGCCAGAAAGAAAATTCAGGTATTCCAGAATGGGTTTTTGGCTGGAGAAGATGCTGATGATGTTGAAAGAGATGAAGAATCTGAATGTGATGATGTTGATGAAGATCCTGAGGTTGATGATATAGCGACAACTTCCTTGGTGAATGAAGATATTAGCAAAGGAGATGCTAACTTAGGAGTTGAGAATGAGAACTTATGTCATGATATTGCTGGAAATCCTCAAAATGAAATTGCCAAAGATATATCGCCGTTCCCCCTAAGTGGCTCTAAGGACACACAATATTTAAATATACCTACAGAGCAGTATGCTGCTGTTGATGAGACTACTATTAGCGATCTTGATCAAGAAAATATGGAGATTGATGAAAGCAAGGAAGGTGAATCATGGATTCAAGGACTTACAGAAGGTGAATATCATGATCTTAGTGTTGAGGAGCGCTTGAATGCCCTTATTGTCTTGACCAGCATTGCAAATGAAGGAAACTCTATTCGCCTTGTTCTTGAGGATCGCTTGGAAGCTGCAAATGCTGTTAAGAAGCAAATGTTGACAGAGGCTCAGATTGATAAATCTCGCCTAAAAGAAGAGATCATTACTAAATCTGATTTTCCAATTCATATAGTGAGCAAGGTGGAAACTGAACTCAATGGTTCCACTATGGATGGTGGGCAAAGCCCTTTTCCTGTTACCGACAATAAGAACAATGAAACAACCCCAAGCACTGCAGAAAACTTTGGTAGTGTGCCTAATGAGAGGGGTACTTTAGTGCCAGATCTTTTCCCAGGCCCAGATAATTTCTTGGCTCAGCAATGTGGACATGCTTCAAAGAGGTCACGTTCACAGTTAAAATCTTATATTGCCCATAGAGCTGAAGAAATGTACACATACAGGTCTTTGCCTTTAGGTCGAGATCGTAGGCGTAATCGGTACTGGCAATTTGTTGCATCTTCCTCAAGCAATGATCCTGGTTCTGGGAGAATCTTTGTTGAAATGTATGATGGAAAGTGGAGGCTTATTGATTCTGAAGAGGGTTTTGATGCTCTTTCGTTGGCTTTGGACACACGTGGGATTAGAGAATCACACCTACGCATAATGTTGCAAATGATAGAGACATCATTTAAGGAAAATGTTCGGAGGAATCTGCAGTGTGCCAATGATATGGTTCGAAGTGGAATTACTCCTAAAAATGAAAATGATGATTCGAGTTCTAGTCCTGATTGCAACACTGGTTTTAACAGTCCTAGCAGTACTGTTTGTGGATTAAATTTGGATACAATGGCAACATCATCTTCGTTCAGAATTGAGCTTGGGAGAAATGAAAACGAAAAGAAGGCTGCATTTAGAAGGTATCAAGACATGCAGAGGTGGATGTTAAGAGAGTGCTTTAGCACATCAACACTGTGTGCCTTGAAATTTGGAGAAAAACGGTGCACTTCAGTGTTGGACATTTGTGATTCTTGTCTGTGCTTGTTTGATTCTCAACATTCTCACTGTCCTTCGTGCCATCAAACTTTTGGCATTAGTGGGAATGATATTAATTTTCTAGAACACATACGTCACTGTGAGAGGGAAAGGAAGTCTAACCCTTTGGATACACACGTTTTAGATGCATGTCTTCCCCTCAAAAGTAGGTTGCTCAAGGCTCTCCTAGCTTTCATTGAGGTACATGTTCCGTCGGAAGCTTTTCAATCGTTTTGGACAGAACATAGGAAAGATTGGGGTGTCAGGATGAAATTATCATCATCTATTGAGGAGCTTCTACAGATATTGACCCTGTTTGAAAGTGTAATTAAGCGGGACTTTCTAAAATCAGATTTTACTACAACTGACGAGCATCTGAGCTCATGTTCCATCTCTGGGAATATTATACATGACCCAGCAGATATTGGGTCTGTTCTTACATTACCATGGATTCCACGGACTAGTGCAGCTGTTGCTTTAAGGCTTTATGAGGTAGATGCATCAATTTATTATATTGGATGTGAGAAACCAGAGCCTGACCAGGATAAGGAAGTTGGAGAACATATAAACTTTTCCAGTAGATATGTCCAGGTTAAGAATGATGAACGGACTAAACTAAACGAGTTGGATTATGATGATCTGATGAAGAATGAAAACTCCGCCGATCCAAAAAGTTTAAGGAACAGCTACAAACGTGGTCGAGGTAGTCGAGATTATGGACGTCGTAGAAAGTGGCAGAAAAAAGTTAATGGATCCAGATCTGGCCGGGTCCGGCAAAATGTCAAGAGTAATGAGAAGATGAATCAAGAACAGAGGGAGCTGGGACAAGGAACACAGGTTATGGGTGTACGAGGCCGCCGTACGGTAAGGAAGAGAAGGGCTGAGAAGAGCACTCCAGATGAAGGACTGTTGGGGCTGGTGCCTGGTAGTAGTACTCAGAACATAGATGAATCCCCAAAAGATTATCTAGGGGAATGGGAGGACGAAAAAATGGATAGGTTTGTCGATATGGAAGATGAAGAGAACGTGATGGAAGATGAAGAAAATGTGATGGAAGATGAGGAGAATGAAGAGAACGTAAACAACGTAGAAGCGATGGACTCCGATGATGATGGCCAGGGAGTTGGGTATGAGCAAGGGGGCTGGGAGTTTGGCTTTGAAGGCACTTCCAACAGATGGAATGGTGATTTAGGGTTGGGTAGCGATGAGGATGTGGATCTATCTGAGGACTACAATGGCACTGAAGAAGGGGGAAATGATGATATAGAGGAGTTAGATGTTGATAGCAGCGAAGAGTCGGATTGTTCACCAAATAGGATAGGCAACAATGGTGGAGGAGAATCCGCTGTTTCAGACGACTATAGTGATTAA 5271 43.29 MEAAASDGENHNQNNDNINKISNSSEGLSKPKRQMKTPFQLETLEKAYALETYPSESTRAELSEKLGLTDRQLQMWFCHRRLKDKKEPAKKPRKVAPAPPLPLPDSPIDELRVVAEPGSDYASGSGSGSSPFGDVGLRNVVPRSVGDDMPMMRRYYEPSRSVMELRAIACVESQLGEPLREDGPILGIEFDPLPPDAFGAPIVAEQQKRSGHSYGDKYEQRDTKSNKVTARGFPEYPFMPDQSNIRADAYGPVSQPHYPDSLGEVSAARTPSFLLGHEQLNRSHNYHNQVSRVRLLSQQEKQGVAIPSPAEDNAFVPPRDSFASIRINSQFTEHPIVGQESSYVLPDGHVFPNDVMIRMERKRKSEEARLSKEAEAHEIRMRKELEKQDILRRKNEERMRKEMEKQDRERRREEERLLREKQREAERLKREERREHERREKFLQREYVRAEKRKQKEAIRKEKEAVRRKAAIEKATARRIARESMELIEDEQLELMELAAANKGLPSILSLDHDTLQNLESFRDYLGAFPPKSVQLKKPFGIQPWINSEENIGNLLMVWRFFITFSDVLELWPFTLDEFVQALHDYDSRLLGEIHICLLRLIVKDIEDVARTPSAGMGMNQNGVANSGGGHPQIVEGAYAWGFDICNWQKHLNPLTWPEIFRQLALSAGFGPQLRKRSLAMSEMRSNDEAKCGEDVVSTLRNGSAAENAFAIMQEKGLLAPRRSRHRLTPGTVKFAAFHVLSLEGSEGLTVLELAEKIQRSGLRDLSTSKTPEASISVALTRDTKLFERIAPSTYRVRAPYRKDPDDAEEILSVARKKIQVFQNGFLAGEDADDVERDEESECDDVDEDPEVDDIATTSLVNEDISKGDANLGVENENLCHDIAGNPQNEIAKDISPFPLSGSKDTQYLNIPTEQYAAVDETTISDLDQENMEIDESKEGESWIQGLTEGEYHDLSVEERLNALIVLTSIANEGNSIRLVLEDRLEAANAVKKQMLTEAQIDKSRLKEEIITKSDFPIHIVSKVETELNGSTMDGGQSPFPVTDNKNNETTPSTAENFGSVPNERGTLVPDLFPGPDNFLAQQCGHASKRSRSQLKSYIAHRAEEMYTYRSLPLGRDRRRNRYWQFVASSSSNDPGSGRIFVEMYDGKWRLIDSEEGFDALSLALDTRGIRESHLRIMLQMIETSFKENVRRNLQCANDMVRSGITPKNENDDSSSSPDCNTGFNSPSSTVCGLNLDTMATSSSFRIELGRNENEKKAAFRRYQDMQRWMLRECFSTSTLCALKFGEKRCTSVLDICDSCLCLFDSQHSHCPSCHQTFGISGNDINFLEHIRHCERERKSNPLDTHVLDACLPLKSRLLKALLAFIEVHVPSEAFQSFWTEHRKDWGVRMKLSSSIEELLQILTLFESVIKRDFLKSDFTTTDEHLSSCSISGNIIHDPADIGSVLTLPWIPRTSAAVALRLYEVDASIYYIGCEKPEPDQDKEVGEHINFSSRYVQVKNDERTKLNELDYDDLMKNENSADPKSLRNSYKRGRGSRDYGRRRKWQKKVNGSRSGRVRQNVKSNEKMNQEQRELGQGTQVMGVRGRRTVRKRRAEKSTPDEGLLGLVPGSSTQNIDESPKDYLGEWEDEKMDRFVDMEDEENVMEDEENVMEDEENEENVNNVEAMDSDDDGQGVGYEQGGWEFGFEGTSNRWNGDLGLGSDEDVDLSEDYNGTEEGGNDDIEELDVDSSEESDCSPNRIGNNGGGESAVSDDYSD 1756
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 36902341 36914450 - CrPI670011_04g019390.1 Cre04g1939 496243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g1939 1756 ProSiteProfiles 'Homeobox' domain profile. 27 87 IPR001356 GO:0003677(InterPro)
Cre04g1939 1756 MobiDBLite consensus disorder prediction 206 238 - -
Cre04g1939 1756 MobiDBLite consensus disorder prediction 1 38 - -
Cre04g1939 1756 Coils Coil 391 469 - -
Cre04g1939 1756 MobiDBLite consensus disorder prediction 1203 1222 - -
Cre04g1939 1756 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 1 1756 IPR044977 GO:0006357(InterPro)
Cre04g1939 1756 MobiDBLite consensus disorder prediction 1536 1551 - -
Cre04g1939 1756 CDD homeodomain 32 87 IPR001356 GO:0003677(InterPro)
Cre04g1939 1756 MobiDBLite consensus disorder prediction 1734 1756 - -
Cre04g1939 1756 MobiDBLite consensus disorder prediction 84 107 - -
Cre04g1939 1756 Pfam Homeodomain 30 86 IPR001356 GO:0003677(InterPro)
Cre04g1939 1756 MobiDBLite consensus disorder prediction 1515 1535 - -
Cre04g1939 1756 MobiDBLite consensus disorder prediction 210 228 - -
Cre04g1939 1756 MobiDBLite consensus disorder prediction 1515 1619 - -
Cre04g1939 1756 MobiDBLite consensus disorder prediction 396 416 - -
Cre04g1939 1756 MobiDBLite consensus disorder prediction 1645 1756 - -
Cre04g1939 1756 Gene3D - 21 97 - -
Cre04g1939 1756 ProSiteProfiles DDT domain profile. 549 608 IPR018501 -
Cre04g1939 1756 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 1109 1181 IPR028941 -
Cre04g1939 1756 SMART HOX_1 29 91 IPR001356 GO:0003677(InterPro)
Cre04g1939 1756 MobiDBLite consensus disorder prediction 1702 1731 - -
Cre04g1939 1756 MobiDBLite consensus disorder prediction 7 31 - -
Cre04g1939 1756 Coils Coil 1637 1657 - -
Cre04g1939 1756 ProSiteProfiles HARE-type HTH domain profile. 731 800 IPR007759 GO:0006355(InterPro)
Cre04g1939 1756 Pfam DDT domain 550 605 IPR018501 -
Cre04g1939 1756 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 938 981 IPR028942 -
Cre04g1939 1756 SMART testlast3 549 608 IPR018501 -
Cre04g1939 1756 MobiDBLite consensus disorder prediction 1645 1665 - -
Cre04g1939 1756 SUPERFAMILY Homeodomain-like 21 87 IPR009057 -
Cre04g1939 1756 Pfam HB1, ASXL, restriction endonuclease HTH domain 731 798 IPR007759 GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0359 Cre-Chr2:706959 Cre04g1939 Cre-Chr4:36902341 1.10E-07 dispersed
Cre02g2596 Cre-Chr2:39223005 Cre04g1939 Cre-Chr4:36902341 7.10E-16 dispersed
Cre04g1939 Cre-Chr4:36902341 Cre09g1006 Cre-Chr9:10301600 6.50E-52 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53538 PF15613 WSD 3.50E-13 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g1939 - - - 0.0