Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g1940 ATGGAGTCCCAGTTGCTCTCACGCGCCACTTCCTTCGCCGGCGGCATTCCCACTCTCCGCAAGTTGCACAGAGACACCACCACTAACAACAACCATGTCGCCTTCGTCCACACCAGGCCCATCGCCGAGGGAGCCAACTTGATCTGGGGAAGACAACTCCGCCCCTCTTTACTGCTCGATACGCCGCATCTACTCTCCGCTAAACGGGAGACGATTCGCCCTACCTTTGCGGCGGCCTCCTCTTCTTCCGCCGGAGGTAGCGATTCCGCCGGGGAGGCGAAGGTTGCCCCGGTGGGGTTCTTAGAGAAGTATCCGGCGTTGGTCACCGGATTCTTCTTCTTTATGTGGTACTTCCTGAACGTGATTTTCAATATCCTCAACAAGAAGATATATAATTACTTCCCCTATCCATATTTTGTGTCGGTGATCCATTTATTGGTTGGGGTGGTGTACTGTTTGATAAGCTGGGCTGTGGGTCTTCCTAAGCGAGCACCTATTGATTCCACCCTCCTGAAGTTGCTGATCCCTGTAGCTTTCTGTCATGCACTTGGCCATGTCACTAGCAATGTCTCATTCGCGGCTGTTGCTGTCTCATTCACTCACACAATCAAAGCTCTGGAACCGTTCTTTAACGCTGCCGCTTCTCAATTCATTTTGGGGCAACCCATTCCCATTACCTTGTGGCTTTCATTGGCTCCCGTTGTCATTGGTGTGTCAATGGCATCCTTGACTGAGCTTTCATTTAACTGGACTGGTTTCATTAGTGCTATGATTTCCAATATCTCCTTTACCTACAGAAGTATTTATTCAAAGAAAGCCATGACTGACATGGACAGCACCAACGTTTATGCCTACATTTCCATTATTGCTCTCCTTTTCTGCATTCCACCTGCTGTAATTGTGGAAGGGCCTCAACTGCTGAAGTTTGGTTTCAATGATGCCATAGCCAAAGTTGGTCTAACCAAATTCGTTTCAGATCTCTTCTGGGTAGGGATGTTTTATCATCTTTACAATCAGTTAGCAACCAACACCTTAGAGAGGGTGGCACCACTTACCCATGCAGTTGGAAATGTGCTGAAACGTGTATTTGTGATTGGATTCTCCATCATTATCTTTGGTAACAAAATCTCTACACAGACTGGTATTGGAACCGGCATTGCAATTGCAGGAGTAGCACTTTACTCTTACATCAAGGCTAAGATGGAAGAAGAGAAACGACGAACAAAGGTGGCTTGA 1236 47.65 MESQLLSRATSFAGGIPTLRKLHRDTTTNNNHVAFVHTRPIAEGANLIWGRQLRPSLLLDTPHLLSAKRETIRPTFAAASSSSAGGSDSAGEAKVAPVGFLEKYPALVTGFFFFMWYFLNVIFNILNKKIYNYFPYPYFVSVIHLLVGVVYCLISWAVGLPKRAPIDSTLLKLLIPVAFCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQPIPITLWLSLAPVVIGVSMASLTELSFNWTGFISAMISNISFTYRSIYSKKAMTDMDSTNVYAYISIIALLFCIPPAVIVEGPQLLKFGFNDAIAKVGLTKFVSDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSIIIFGNKISTQTGIGTGIAIAGVALYSYIKAKMEEEKRRTKVA 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 36917519 36921114 - CrPI670011_04g019400.1 Cre04g1940 496244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g1940 411 PANTHER SOLUTE CARRIER FAMILY 35 100 399 IPR050186 GO:0005794(PANTHER)|GO:0015297(PANTHER)
Cre04g1940 411 SUPERFAMILY Multidrug resistance efflux transporter EmrE 151 244 - -
Cre04g1940 411 NCBIfam Tpt phosphate/phosphoenolpyruvate translocator 107 405 IPR004696 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
Cre04g1940 411 Pfam Triose-phosphate Transporter family 108 395 IPR004853 -
Cre04g1940 411 SUPERFAMILY Multidrug resistance efflux transporter EmrE 324 396 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1940 Cre-Chr4:36917519 Cre05g2545 Cre-Chr5:36733977 6.60E-149 dispersed
Cre04g1940 Cre-Chr4:36917519 Cre04g1827 Cre-Chr4:36055411 5.50E-63 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g1940 K15283 - csv:101220728 756.133