Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g1942 ATGCCTTTATGGCCCTTCCTCTTCCTCTTCTGTTTCCCTCTGTTTTCCTTCTCCCTCAACCAAGAGGGTTATGTTCTCTACACCTTTAAGCGCTCCGTTGAGGATCGTAACAATGTCTTCTCCACTTGGCACGAAGCCGACCCCGATCCCTGTTCATGGGATGGCATCACCTGCGACGCCCATCATCACGTTATTTCTGTTGATCTCTCCAGCTCTCGTATTTCTGCTTCTTTCCCTCTTCAACTCTGTAAGCTTCCGCATCTCCTCTACCTTTCTCTTTACAACAATACCTTCCATTCCCTTCTTCCCGCTGGGATTTCCAATTGTACCAGCCTCGAGTTTCTTGACCTTAGTCAAAATCTCCTCACCGGTCCTCTGCCTCCCTCCATTGCTGATTTGCCCAACATCCGATACTTGGATTTGTCTGGCAACAATTTCTCCGGCGAAATACCACCCTCCTTCGGTCAGTTTCGGAAACTTGAGGCGTTTTCAATTGTTTTGAATCTTGTGAGTGGTACAATTCCTCCGTTTCTTGGTAACATTACTACTCTTAGGATGTTGAATATGTCTTACAACTCGTTTTCGCCCGGAAGAATCCCGCCGGAGCTGGGTAGTCTGGTGAATCTTGAGGTTCTTTGGTTGACGGCTTGTAACTTAGTGGGGGAGATTCCTGAGTCGCTGATAGGGCTGGAGCAACTTGTTCTTCTAGATTTGAGCATTAACAATCTTACTGGGCCGTTCCCGCGGGCGCTGACGGAGTTAACCCACGTGACCCAGATTGAGTTATTTGGCAATAAGTTAACCGGCGTGTTACCGAATGAGTTTTCGAAACTCAAGTCGCTGCGGTTGTTCGACATCTCGATGAATAATCTCGCTGGGCCAATTCCGGGTAGCTTGTTTGAGTTGCCGCTTGAAAGTCTTAATGCGTTTGAGAATAATTTCGAGGGGAGCTTGCCGGAAAGCATAGGGGAGTCGAGGACTTTGAGAGAGATAAAGCTATTTGCGAACAGATTCACAGGGTCGTTACCAACACATTTGGGGAAATATTCACCTCTAGAATCGTTGGACATTTCAGACAACTTCTTTTCCGGCAGGCTCCCCGAGAACTTGTGTGAGAAGGGGGCATTGATAGAGATAATGTTGATCAACAACCTGTTTTCCGGCGAACTCCCGTCGAGTCTTGGTAATTGTCAGAGTCTGACCAGGATGCGATTAGGGAACAACAATTTTACGGGTTCTGTACCAGAAAATGTATGGGGACTTTCAGATGTTGCTCTTATGGAACTTGCAAACAACTCCTTCTCTGGCCCAATCTCAAAGAAAATAGCCAACGCCAAGATGCTGAGTTTGCTTCTTATTTCTAATAACAATTTCTCAGGAACAATTCCAGAGGAGATTGGTTCTTTGGAGAATATGGTAGAGTTTTCCGCCGACCATAACAAGTTCATAGGAAATATCCCTGAAAGCCTTACAAAAATGGATCGACTTGCTAAGTTAGATCTTCAAAACAACAGACTTTCGGGGTTGCTCAACTACAGGCTTGATGCCTGGGAGAGGCTGAATGAGCTCAATCTGGCCAATAATAACTTCTCTGGGCCAATTCCCCCGGAAATTGCTAGCTTGCCAGTGCTTAATTACCTCGATCTTTCAGGCAATCAATTTTCTGGGGAAATCCCAAATGGGTTACAGAATTTGAACCTCAATGTTCTGAATCTGTCATACAACCAATTAACTGGGACACTTCCTTCCTATTTCGAGAGATCAATGTACAAAAATAGCTTTCTAGGCAATCCTGATTTATGTAGGGAGGAAAACGGTGCGTGTCATACAGTTCAGTCTACAAGAAATGGAGGAGGAGGAGGAGGTTGTGATGAGGGAGGAGGTTGCATTTGGCTGCTGCGATCCGTCTTTGTATTTGCAGGTTTAATTTTCTTTGTGGGAGTGGTTCTATTCCACGTCAAGTACAGGACATTCGTCAAGGCAAGAAGTCTCAACATCAAATCAAAATGGACAATGATATCGTTCCAAAAGCTCTCTTTTGGCGAGGACGAGATTGTGGGTTCCCTAGATGAACACAATGTGATAGGCAGTGGAGGCTCTGGCCTAGTTTACAAGGTTGCTCTCGCCAATGGCGAAACCATTGCAGTTAAGAAACTTTGGCCCGAGCTGCCCAATGACTGCCCGAGCATTGATCTCGAGAAAAATTGGACTGAAATTAATGCTTTTGATGCAGAAGTGAAGACTTTGGGTGAAATCAGGCACAAAAACATAGTGAAACTTTTGTGTTGTTGTACCAATGGAGACTGCAAGCTTTTGGTCTTTGAATACATGCCTAATGGGAGCTTAGGTGATATGCTTCATGGTAGTAGAAGTGAGTTATTGGATTGGCCAACACGATACAAGATAGCCTTGGATGCTGCTGAGGGGCTTTCTTATCTTCATCATGATTGTGTTCCTCCAATTGTACACAGAGATGTCAAGTCCAATAACATTTTGTTGGATGCTGAATTCGGAGCTAAGATAGCAGATTTTGGAGTAGCTATGGCTGTCGATATATCCCAGGGTAAATCCATGTCAGTGATTGCTGGTTCTTGTGGCTATATTGCCCCAGAGTATGCTTATACATTGAAAGTGAATGAGAAGAGCGACATCTTTAGCTACGGGATGGTTATCCTTGAATTGATAACGGGGAAGCGGCCGATCGACTCCGAGTTCGAAGAAAACGATCTGGTGAAATGGGTATGCACCACTTTAGAAGAAGAAGGCGTCAACCATATTCTAGACCCCAAATTGGATTCGTGTCACCAGGAGGAAATGTTGAAGGTCCTCAACATTGGCCTCCTATGCAGCAGTCCTCTACCTATCAACCGCCCATCCATGAGACGAGTGGTTACAATGTTGTTAGAAGTTCGCACGGATAGCAATTCGAAGATTGGAAGGAGAAAGGGAAGATTGACACCATATTATTTCGAGGATGTTTTGGATAGTGGAAATGTGGTGCAGTTCTTAAGTTGTTGA 3018 44.93 MPLWPFLFLFCFPLFSFSLNQEGYVLYTFKRSVEDRNNVFSTWHEADPDPCSWDGITCDAHHHVISVDLSSSRISASFPLQLCKLPHLLYLSLYNNTFHSLLPAGISNCTSLEFLDLSQNLLTGPLPPSIADLPNIRYLDLSGNNFSGEIPPSFGQFRKLEAFSIVLNLVSGTIPPFLGNITTLRMLNMSYNSFSPGRIPPELGSLVNLEVLWLTACNLVGEIPESLIGLEQLVLLDLSINNLTGPFPRALTELTHVTQIELFGNKLTGVLPNEFSKLKSLRLFDISMNNLAGPIPGSLFELPLESLNAFENNFEGSLPESIGESRTLREIKLFANRFTGSLPTHLGKYSPLESLDISDNFFSGRLPENLCEKGALIEIMLINNLFSGELPSSLGNCQSLTRMRLGNNNFTGSVPENVWGLSDVALMELANNSFSGPISKKIANAKMLSLLLISNNNFSGTIPEEIGSLENMVEFSADHNKFIGNIPESLTKMDRLAKLDLQNNRLSGLLNYRLDAWERLNELNLANNNFSGPIPPEIASLPVLNYLDLSGNQFSGEIPNGLQNLNLNVLNLSYNQLTGTLPSYFERSMYKNSFLGNPDLCREENGACHTVQSTRNGGGGGGCDEGGGCIWLLRSVFVFAGLIFFVGVVLFHVKYRTFVKARSLNIKSKWTMISFQKLSFGEDEIVGSLDEHNVIGSGGSGLVYKVALANGETIAVKKLWPELPNDCPSIDLEKNWTEINAFDAEVKTLGEIRHKNIVKLLCCCTNGDCKLLVFEYMPNGSLGDMLHGSRSELLDWPTRYKIALDAAEGLSYLHHDCVPPIVHRDVKSNNILLDAEFGAKIADFGVAMAVDISQGKSMSVIAGSCGYIAPEYAYTLKVNEKSDIFSYGMVILELITGKRPIDSEFEENDLVKWVCTTLEEEGVNHILDPKLDSCHQEEMLKVLNIGLLCSSPLPINRPSMRRVVTMLLEVRTDSNSKIGRRKGRLTPYYFEDVLDSGNVVQFLSC 1005
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 36928772 36931913 + CrPI670011_04g019420.1 Cre04g1942 496246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g1942 1005 SUPERFAMILY Protein kinase-like (PK-like) 685 967 IPR011009 -
Cre04g1942 1005 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 179 270 - -
Cre04g1942 1005 FunFam Receptor-like protein kinase HSL1 303 610 - -
Cre04g1942 1005 SMART serkin_6 689 989 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre04g1942 1005 Gene3D Ribonuclease Inhibitor 18 168 IPR032675 -
Cre04g1942 1005 Gene3D Ribonuclease Inhibitor 169 270 IPR032675 -
Cre04g1942 1005 Pfam Leucine Rich Repeat 208 229 IPR001611 GO:0005515(InterPro)
Cre04g1942 1005 Pfam Leucine Rich Repeat 448 469 IPR001611 GO:0005515(InterPro)
Cre04g1942 1005 Pfam Leucine Rich Repeat 352 371 IPR001611 GO:0005515(InterPro)
Cre04g1942 1005 Pfam Leucine Rich Repeat 566 586 IPR001611 GO:0005515(InterPro)
Cre04g1942 1005 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 19 178 - -
Cre04g1942 1005 SUPERFAMILY L domain-like 304 608 - -
Cre04g1942 1005 Pfam Protein kinase domain 691 943 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre04g1942 1005 ProSitePatterns Serine/Threonine protein kinases active-site signature. 821 833 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre04g1942 1005 Pfam Leucine rich repeat 495 554 IPR001611 GO:0005515(InterPro)
Cre04g1942 1005 Pfam Leucine rich repeat N-terminal domain 19 59 IPR013210 -
Cre04g1942 1005 SUPERFAMILY L domain-like 42 302 - -
Cre04g1942 1005 Gene3D Transferase(Phosphotransferase) domain 1 777 986 - -
Cre04g1942 1005 ProSiteProfiles Protein kinase domain profile. 689 968 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre04g1942 1005 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 777 983 - -
Cre04g1942 1005 SMART LRR_typ_2 254 277 IPR003591 -
Cre04g1942 1005 SMART LRR_typ_2 206 230 IPR003591 -
Cre04g1942 1005 SMART LRR_typ_2 85 109 IPR003591 -
Cre04g1942 1005 SMART LRR_typ_2 493 516 IPR003591 -
Cre04g1942 1005 SMART LRR_typ_2 541 564 IPR003591 -
Cre04g1942 1005 SMART LRR_typ_2 278 302 IPR003591 -
Cre04g1942 1005 SMART LRR_typ_2 133 157 IPR003591 -
Cre04g1942 1005 Gene3D Ribonuclease Inhibitor 272 612 IPR032675 -
Cre04g1942 1005 Gene3D Phosphorylase Kinase; domain 1 668 776 - -
Cre04g1942 1005 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 14 970 IPR050647 -
Cre04g1942 1005 Pfam Leucine Rich repeats (2 copies) 110 151 IPR025875 -
Cre04g1942 1005 ProSitePatterns Protein kinases ATP-binding region signature. 695 718 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g1879 Cre-Chr3:35730265 Cre04g1942 Cre-Chr4:36928772 2.20E-73 dispersed
Cre04g1942 Cre-Chr4:36928772 Cre10g0982 Cre-Chr10:14495930 1.10E-91 dispersed
Cre10g2345 Cre-Chr10:37620307 Cre04g1942 Cre-Chr4:36928772 7.80E-43 wgd
Cre03g0925 Cre-Chr3:8021185 Cre04g1942 Cre-Chr4:36928772 8.00E-156 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64091 PF00069 Pkinase 4.00E-41 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g1942 - - - 0.0