Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g1948 ATGGGTGCTCTCATCGATCTCAATACTACTGAAGAAGATGAATCTCCCTCTTCTGCTGGTTCCTCTGTTTCTTCTTCCTCCGCTTCTGCTTTAACCTCCTCTCCTTCACCTTCTGTTACTTCCTCAATTTGCTTGGAGCTATGGCATGCTTGTGCTGGACCTCTCACCTCTTTGCCCAAGAAAGGGGGTTTGGTTGTGTATTTGCCGCAGGGTCACTTCGAGCTGATTCAAGAATTTCCGGCTACGCCTTATGATCTCCCTCCCCACATCCTCTGTCGCGTCATTGATGTTCAGCTTCATGCCGAAGCTGGGAGTGACGAGGTTTATGCTCAGGTTTCTTTGTTTCCTGAAAACAAGAAAATGGAGCACAAGATGCAGGAAGAGATGAACAATGACAGTGAGGAGGAGGATGTTGAAGAAGGTGAGAAGACTACAACACCCCACATGTTCTGCAAGACCCTTACCGCTTCTGACACCAGTACTCATGGAGGCTTTTCCGTCCCTAGACGTGCAGCTGAGGATTGCTTCCCACCATTGGATTATAATCAACAGAGGCCTTCACAAGAGCTCGTAGCAAAGGATCTCCTTGGGCTAAAATGGAAGTTCAGGCACATATATCGTGGGCAGCCTAGAAGGCATTTGCTAACCACTGGATGGAGTGCTTTCGTGAACAAGAAAAGGCTTGTTTCTGGAGATGCAGTGCTTTTTCTTAGGGGCAACGATGGTGAATTAAGACTGGGAATTCGAAGAGCTGCACAGCTTAAAAATGGTTCTGCCTTTTCCAATATTTGCAGTCAGCAGCTCAACTCTAGTAGTGTCATGGATGTGGTTAATGCGATATCTACAAAAAGTTCCTTTAGTGTATACTACAATCCCAGGGGTACCTCTTCACAGTTTGTCTTACCCTTTCACAAGTTCTTGAAGAGCATTAACCATTCTTTCTCTGTTGGAATGAGGTTTAGGCTGAGTTTTGAAACCGAAGATGCTGCAGATCGAAGACATTCTGGACATATAACTGGAGTTGCCGATGTGGATCCTATCAGATGGCCAGGATCAAGGTGGAGGTCCCTTATGGTGAGGTGGGACGATGGCGAAACTAACAGGCATGGCAGGGTTTCCCCTTGGGAGATTGAGCCCTCTGGTTCTGTCTCTTTGTCTAGCAACTTGGTTCCACCTGGTCTGAAAAGAACCAGGATTGGGCTCTCTTCCACAAAACTAGAGTTTCCAGTTCCAAATGGGATTGGAGCATCAGACTTTGGGGAATCTTTAAGGTTCCAGAAGGTCTTGCAAGGTCAAGAAATTTTAGGTTACAGTACTCCCATTGACGGTGAGGAAAACAATCGTAATCCACCCGAAAAGAGGAGATTGTTTCCTGGTTTACATGGTTCTGGGATAGCTCTGATGAGAAATGGTCCAAGAATCCCACTTATTAACTCCGAAACTTCCTCCCGGGGTATCGTGTTTGATGAATCCTTTCAATACCATAAGGTCTTGCAAGGTCAAGAAATATTTCCAAGTCCCTTTTATGGTAGGTCCATGGCCACCAATGAAGTTAAGGCAAGTGGTGGTTGTGGCCCTGTCGATGGCATTCGATTATCTAGGACTAAAGATGGATGGCCCATGACAATGCAATGTGAAAATTTCCTCACACGGTCTTCCATTCCTTCTGTACAAGTCTCATCACCATCTTCTGTGTTAATGTTTCAGCAGTCAATGGTTCCTGTTCAAAGCTTTAAATCACATAACCGTGTTGCAGAACGGAGGATTATGAACAAAAGTACATCCCATAATTCTGGGACAGCATTTATCACTGACCATAGCTTGAATACTGAAGTCAACCCACAAGGCATGTGTCCCACTTCATTGGGCGAGCAGAATCAGCTCGGCCTATCACATCCTTCAACAACAACAGCACCAGCAGCATTTACAGGCAGTAAAGATCTGTCTTCAACTTGCAAACCTGGCTGTAGATTGTTTGGTTTTTCATTGACAGAGGAAAAGAATGTTGGGAATGACAAGGCTTCTCCAGCAACAACTTCCAATAATGCAGGAACAACCACTGTTTTGTCCAATGTTGGAGTACAATGTCCTTTGAAGTCTCCTCTCATGAGCAAGGTGGTTGGAAGCAACTGTACCAAAGGGGCTTTTCAGTACCACTTTGCAAATTACAGTACCTACTACTGA 2184 45.28 MGALIDLNTTEEDESPSSAGSSVSSSSASALTSSPSPSVTSSICLELWHACAGPLTSLPKKGGLVVYLPQGHFELIQEFPATPYDLPPHILCRVIDVQLHAEAGSDEVYAQVSLFPENKKMEHKMQEEMNNDSEEEDVEEGEKTTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYNQQRPSQELVAKDLLGLKWKFRHIYRGQPRRHLLTTGWSAFVNKKRLVSGDAVLFLRGNDGELRLGIRRAAQLKNGSAFSNICSQQLNSSSVMDVVNAISTKSSFSVYYNPRGTSSQFVLPFHKFLKSINHSFSVGMRFRLSFETEDAADRRHSGHITGVADVDPIRWPGSRWRSLMVRWDDGETNRHGRVSPWEIEPSGSVSLSSNLVPPGLKRTRIGLSSTKLEFPVPNGIGASDFGESLRFQKVLQGQEILGYSTPIDGEENNRNPPEKRRLFPGLHGSGIALMRNGPRIPLINSETSSRGIVFDESFQYHKVLQGQEIFPSPFYGRSMATNEVKASGGCGPVDGIRLSRTKDGWPMTMQCENFLTRSSIPSVQVSSPSSVLMFQQSMVPVQSFKSHNRVAERRIMNKSTSHNSGTAFITDHSLNTEVNPQGMCPTSLGEQNQLGLSHPSTTTAPAAFTGSKDLSSTCKPGCRLFGFSLTEEKNVGNDKASPATTSNNAGTTTVLSNVGVQCPLKSPLMSKVVGSNCTKGAFQYHFANYSTYY 727
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 36969652 36973995 - CrPI670011_04g019480.1 Cre04g1948 496252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g1948 727 FunFam Auxin response factor 313 384 - -
Cre04g1948 727 MobiDBLite consensus disorder prediction 1 36 - -
Cre04g1948 727 SUPERFAMILY DNA-binding pseudobarrel domain 145 260 IPR015300 -
Cre04g1948 727 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 42 677 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cre04g1948 727 MobiDBLite consensus disorder prediction 10 36 - -
Cre04g1948 727 FunFam Auxin response factor 148 252 - -
Cre04g1948 727 Gene3D - 313 387 - -
Cre04g1948 727 Pfam Auxin response factor 276 357 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cre04g1948 727 CDD B3_DNA 148 250 IPR003340 GO:0003677(InterPro)
Cre04g1948 727 Gene3D - 148 252 IPR015300 -
Cre04g1948 727 ProSiteProfiles B3 DNA-binding domain profile. 150 252 IPR003340 GO:0003677(InterPro)
Cre04g1948 727 SMART B3_2 150 252 IPR003340 GO:0003677(InterPro)
Cre04g1948 727 Pfam B3 DNA binding domain 150 251 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1948 Cre-Chr4:36969652 Cre06g2687 Cre-Chr6:34327108 3.60E-97 dispersed
Cre04g1948 Cre-Chr4:36969652 Cre02g2408 Cre-Chr2:37450912 1.30E-126 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53540 PF02362 B3 1.60E-21 CL0405 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g1948 K14486 - csv:101220018 1298.49