Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g1950 ATGGTACTCCCGTTATTGAAGCTCGGAACCCTGGCGTTGAAAACTCTGAGTAAGCCGCTCGGTAATAGGCTCAAGAAACAAGCTGCGTTGCACCCCAGATTTAGGCAGTTCATCATTAATGTGGCCCAGATTAACCATCGGATGTCAACGCAAATGCAAAGACGCATATACAGTCATGCAACTGATGTAGAAATTCGCCCTCTGGATGAGGAGAAAGCAGTTCAGGCTGCTGTTGACCTGATTGGCGAGGTTTTTGTCTTCTCGGTAGCCGGAGCAATAGTGATATTTGAGGTTCAAAGAAGTGCTAGGTCAGAAGCCAGAAAAGAAGAACTACGCAGACAAGAAATGGAGGCACTGAGGCAAAGGGACGAAAGCTTATCGACAGAAATGGAACTTTTGAAGCTTAAACTTGTAGAATTGGAACAACAAGCCAAAGGACGAGGTCTTGGTGGTGTCCTTGCACTTTCTTGCTCCATATTGTGGGAGGTCCAAGCCCTGTTCAGAACTAGGGCTTGCCATTCACCTGCTACCCATTTTCCTGCGAGTTCCTCGGGGCTAGGAGAAAAGTTTGAGTTCTGTAATGGGAAAGCATTCAAAGACCAGTTGCAATATGCAAGGAAAGAGAGCCGCACGGTTGATGTGACAGTTCTCGAGGAACAAGTTCATCAGATGCTTCGTGAGTGGAAAGCTGAGCTGAACGAGCCCTCTCCAGCATCCTCTTTGCAACAAGGTGGAAGTCTTGGGTCATTTTCATCGGACATTTGTCGATTGTTGCAACTTTGCGAGGAGGATGATGATGCGTCTAGTCCATTAGCTGCTCCTAAGCCCGAACCTAATGAACAAAATTTGCAGGTTGGAGATACTATGGCACTGCAAGAGGGATATAATGTGAATCATGGACACCAAGAACCAAGCTTCCCTCTGGTTGATCAATGCAAGAACTCCCCTTCAGGAGTTCATGGTATGGCTATGAATAACTTGGAAGGACCTACACAATTGGAGTGTCATCAGTTTGATTTACATCAAGGCATTGAGCACAACTTCTACTCTATTCTTAATGGTAGAGGATTATGTGGGGAGGGTGCAATTGCTCATGTTTCTAGCTACTGTCCCAGCATTTGCCCTCCACCTGCTGCTTTTTTGGGCCCAAAATGTGCGCTTTGGGATTGCCCACGACCTGCCCAAGGGATGGATTGGTGTGAGGACTACTGTAGCAGCTTTCATGCTGCCTTAGCATTGAATGAAGGCCCTCCTGGAATGGGTCCAGTTTTACGACCTGGTGGAATTGGTCTGAAGGATGGTTTGCTTTTTGCTGCTCTTAGTGCAAAGGCACAAGGGAAAGATGTTGGTATCCCTGAATGTGAGGGAGCTGCCACGGCAAAATCCCCATGGAATGCTCCTGAGCTTTTTGATCTGTCAATATTGGAGGGTGAGATGATTAGGGAGTGGCTTTTCTTTGATAAGCCTCGTAGAGCATTTGAGAGTGGGAATAGAAAGCAGAGGTCACTGCCTGATTACAGTGGACGTGGTTGGCACGAGTCAAGAAAGCAAGTGATGAATGAGTTTGGAGGGCTGAAAAGATCTTATTACATGGATCCCCAGCCATTGAACCACTTTGAGTGGCATCTTTATGAATATGAAATTAATAAGTATGATGCCTGCGCTTTGTATAGATTGGAGCTGAAACTTGTCGATGGGAAAAAAGGTTCTAAGGCAAAGGTATCTAATGATTCAGTTGCTGATTTACAGAGGCAAATGGGGAGATTGACCGCTGAATTTCCTGATAATAAACGCTTTGTTAAGGGGAGGACCAGAATTAACACCAAAGTTGGTCTTGGAAATGTTTACCCCTCAGCAAATAGAGTCATGCCGCCTAATGGAACATATGACTATATGCTTCATGCACAATATGACTACCTTGTGGAGAATTTGAGTGAATATTACCTTACATAG 1953 45.47 MVLPLLKLGTLALKTLSKPLGNRLKKQAALHPRFRQFIINVAQINHRMSTQMQRRIYSHATDVEIRPLDEEKAVQAAVDLIGEVFVFSVAGAIVIFEVQRSARSEARKEELRRQEMEALRQRDESLSTEMELLKLKLVELEQQAKGRGLGGVLALSCSILWEVQALFRTRACHSPATHFPASSSGLGEKFEFCNGKAFKDQLQYARKESRTVDVTVLEEQVHQMLREWKAELNEPSPASSLQQGGSLGSFSSDICRLLQLCEEDDDASSPLAAPKPEPNEQNLQVGDTMALQEGYNVNHGHQEPSFPLVDQCKNSPSGVHGMAMNNLEGPTQLECHQFDLHQGIEHNFYSILNGRGLCGEGAIAHVSSYCPSICPPPAAFLGPKCALWDCPRPAQGMDWCEDYCSSFHAALALNEGPPGMGPVLRPGGIGLKDGLLFAALSAKAQGKDVGIPECEGAATAKSPWNAPELFDLSILEGEMIREWLFFDKPRRAFESGNRKQRSLPDYSGRGWHESRKQVMNEFGGLKRSYYMDPQPLNHFEWHLYEYEINKYDACALYRLELKLVDGKKGSKAKVSNDSVADLQRQMGRLTAEFPDNKRFVKGRTRINTKVGLGNVYPSANRVMPPNGTYDYMLHAQYDYLVENLSEYYLT 650
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 36991625 37001655 + CrPI670011_04g019500.1 Cre04g1950 496254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g1950 650 Pfam Optic atrophy 3 protein (OPA3) 6 126 IPR010754 -
Cre04g1950 650 PANTHER TRANSCRIPTION FACTOR VOZ1 201 648 IPR039277 GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0043565(PANTHER)|GO:0045893(PANTHER)|GO:0048578(InterPro)|GO:0048578(PANTHER)
Cre04g1950 650 Coils Coil 101 143 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0561 Cre-Chr2:2699537 Cre04g1950 Cre-Chr4:36991625 1.40E-52 dispersed
Cre02g1310 Cre-Chr2:16281353 Cre04g1950 Cre-Chr4:36991625 8.70E-132 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53541 PF07047 OPA3 2.00E-41 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g1950 - - - 0.0