Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g1962 ATGAGAGCCGACCCATTTCTCGATCAAAGAGTTCGTTCCCATGTCGCTGATATAAGCACTTCGTTTGCGAAGATGGGTTCTGGTCGTTGGTTTAAGGCAGTAATTCGCTTAAAGAAAGTGAAAACCTGCAGTTCAAAACAAACTAAGGAGAAATTGGATGATTTGCAAAAAGATTCCCCAAGGTTTAAAAATGGTGGCACCAATGGGAATAGTAAGTCTCTTGGGATGCCAATTGAAGATGTAGCGGCAGTTCGGATTCAGACAGCATACCGAGCATATCGTGCCAGGAAAAATTTACGTCGCTTGAAAGGGGCCTTCAGACTGCAGAATCTGACTCAAGGCAATTCCGTTAGAAAGCATGCTACATCTACATTAGGCTATCTTCATTCATGGAGCAATATACAGGCTCAAATTAGGGCTCGTCGACTTTGTATGGTGACAGAAGGACGACTAAGACAAAAAAAATTAGAAAATCAACGAAAACTTGAGGCTAAGCTTCATCATATAGAGGTGGAGTGGTGTGGGGGTGCAGACTCCATGGATGGGATTCTTTCGAGGATACATGAGAGAGAAGAAGCGGCGGTTAAGCGCGAGCGTGCTATGGCATATGCATTCTCACATCAGTGGAGAGCAAACTCCAATGAGATGTATGGGTTGGGTAAAGATGAACTTGGTAAAGCTGATTGGGGTTGGAGCTGGAAAGAACGATGGATAGCTGCTCGTCCGTGGGAAAGCCGTGTGCCATCTCAGTTCGATAGTCCAAAGAAATCTACAATTAGGCAATCAAGCAAAGTCAGTAAGAGAAACTCGCCATCCCCTAAAGCACGAGTTTCAATTAAACCTCCTTCCCCAAATGTGAAATCAACTTCAAAGGCTCGAAGGTTGTCTTATCCAGCAACCGAGAAAACCGAAAAACTGGCTACAGAAGAAAAAGGCGTCAAAGAAAGCGTTAAAAACGAAGGGAACACTAAGAAAGAAGAAACAGCATCCTAA 993 43.91 MRADPFLDQRVRSHVADISTSFAKMGSGRWFKAVIRLKKVKTCSSKQTKEKLDDLQKDSPRFKNGGTNGNSKSLGMPIEDVAAVRIQTAYRAYRARKNLRRLKGAFRLQNLTQGNSVRKHATSTLGYLHSWSNIQAQIRARRLCMVTEGRLRQKKLENQRKLEAKLHHIEVEWCGGADSMDGILSRIHEREEAAVKRERAMAYAFSHQWRANSNEMYGLGKDELGKADWGWSWKERWIAARPWESRVPSQFDSPKKSTIRQSSKVSKRNSPSPKARVSIKPPSPNVKSTSKARRLSYPATEKTEKLATEEKGVKESVKNEGNTKKEETAS 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 37087747 37093379 + CrPI670011_04g019620.1 Cre04g1962 496266

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g1962 330 MobiDBLite consensus disorder prediction 246 330 - -
Cre04g1962 330 MobiDBLite consensus disorder prediction 46 73 - -
Cre04g1962 330 MobiDBLite consensus disorder prediction 282 296 - -
Cre04g1962 330 PANTHER IQ-DOMAIN 5-RELATED 73 291 - -
Cre04g1962 330 MobiDBLite consensus disorder prediction 250 273 - -
Cre04g1962 330 MobiDBLite consensus disorder prediction 297 330 - -
Cre04g1962 330 ProSiteProfiles IQ motif profile. 79 107 - -
Cre04g1962 330 MobiDBLite consensus disorder prediction 46 60 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g1962 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g1557 Cre-Chr3:30944266 Cre04g1962 Cre-Chr4:37087747 1.50E-32 dispersed
Cre04g1962 Cre-Chr4:37087747 Cre07g1360 Cre-Chr7:28500905 2.40E-53 dispersed
Cre04g1962 Cre-Chr4:37087747 Cre01g0429 Cre-Chr1:3658142 1.60E-33 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi10g183 . . Bda02g00019 . . Bpe01g00879 . . . . . Cma07g00203 . Car07g00168 . . . Bhi03g00330 . . . . . . Cla01g02298 Cam01g2409 Cec04g2056 . Clacu01g2430 Cmu01g2294 Cre04g1962 Cone1ag0191 Cone5ag1677 . . Lsi01g00265 Csa06g03677 . Cme08g00247 . . . . . . . Bma11g01010 . . Cmo07g00202 . . . . Cpe19g01052 . . . . . . . . . . . . . . . . . Chy02g00253 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre01g0429 . 1 479 IQD Protein Family AT3G52290 54.2 2.6e-103 372.9
Cre05g2265 . 1802 2011 IQD Protein Family AT2G26410 50.7 4.8e-43 172.9
Cre03g1557 . 36 443 IQD Protein Family AT3G22190 57.8 7.9e-97 351.3
Cre05g1963 . 1 438 IQD Protein Family AT2G26180 61.6 3.8e-120 428.7
Cre04g1962 . 25 298 IQD Protein Family AT2G33990 52.1 6.1e-63 238.0
Cre07g1360 . 89 267 IQD Protein Family AT2G33990 53.3 4.0e-46 182.2
Cre04g1962 . 25 246 IQD Protein Family AT3G15050 50.5 4.6e-55 211.8
Cre07g1360 . 88 279 IQD Protein Family AT3G15050 58.2 2.5e-53 206.1
Cre09g1774 . 111 463 IQD Protein Family AT5G13460 50.1 2.6e-74 276.6
Cre06g1039 . 29 537 IQD Protein Family AT4G00820 51.3 4.0e-114 409.1
Cre03g1876 . 1 391 IQD Protein Family AT3G16490 50.5 2.5e-65 246.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007113 1 8 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 0 2 1 2 37