Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g1993 ATGGCCGACCGGCCGGACCCTGACAAGAAGACCGAAACCACCAGGAAGGACATGCCCGCGCTTCTTTTGGGCCGATACGAGATCGGGAAGCTCCTTGGCCATGGGACCTTCGCTAAGGTCTACCATGCCCGAAACATCAAGACCAACGAAAGCGTCGCCATTAAAGTCATCGACAAGGAGAAGATCCTCAAGGGTGGTTTAATCGCCCACATCAAACGCGAGATCTCAATCCTCCGCCGTGTTCGACACCCCAATATTGTGCAACTCTTCGAGGTCATGGCCACCAAGGCCAAGATCTACTTCGTTATGGAATATGTCCGCGGCGGCGAGCTTTTCAAGAAGGTTTCCAAGGGCCGATTGAAGGAAGAGGTTGCACGAAAGTACTTTCAGCAATTAATCTCTGCCGTTGCTTTTTGCCACGCGCGTGGTGTTTATCATCGGGACCTTAAACCGGAGAATTTGCTGCTCGATGAGAATGGGAATCTTAAGGTCTCCGATTTTGGCCTCAGCGCCGTCTCGGATCAAATTCGACAAGATGGGTTGTTTCATACTTTTTGTGGTACGCCGGCGTATGTGGCTCCGGAGGTTTTGGCCCGGAAAGGGTATGAGGCTGCGAAGGTCGATATTTGGTCATGTGGGGTTATTCTGTTTGTTCTGATGGCGGGTTATTTACCCTTCCACGACCAAAACATTATGGCAATGTATAAGAAGATTTACAAGGGGGAGTTTCGGTGTCCGAGATGGTTCTCGCCGGAGCTAATTCGACTCCTAACTCGTCTTCTAGATACAAATCCCGAAACCCGTTTCACAATTCCTGAAATCATGGAGAACAAATGGTTCAAAAAGGGGTATAAACATATCAAATTCTACATCGAAGACGATAAGGTCTGCAGCGTTGAGGACGGTAACGATGATGTCGATTCCTTGTCGGATCAATCACAATCGGAATCGGATTCTGAAATTATTGAGACCAGAAGAAAGGTTACCTCACTCCCAAGACCCGCGAGTTTGAATGCATTTGATATAATTTCGTTTTCGCCCGGATTTGATCTTTCTGGGTTGTTTGAGGATGGAGGGGAAGAGGCAAGATTTGTGTCCAGTGCTCCGGTGTCGAAGATTATATCGAAATTAGAGGAGATTGCAAAATTGGTCAGTTTTACTGTGAGGAAGAAGGATTGCAGGGTTAGTTTAGAGGGGTCACGGGAAGGAGTAAAAGGGCCATTGACAATCGCGGCCGAGGTATTCGAGTTGACCCCGAAATTGGTGATGGTGGAGGTGAAGAGGAAAGGGGGAGATAAAGCAGAGTATGAACAATTCTGTAATAATGAACTGAAGCCAGCACTGTTGAATCTGAAGATGGAAGAGTCTGCTGCTCCATCACATATACCATCAGATACTGAATGA 1404 47.65 MADRPDPDKKTETTRKDMPALLLGRYEIGKLLGHGTFAKVYHARNIKTNESVAIKVIDKEKILKGGLIAHIKREISILRRVRHPNIVQLFEVMATKAKIYFVMEYVRGGELFKKVSKGRLKEEVARKYFQQLISAVAFCHARGVYHRDLKPENLLLDENGNLKVSDFGLSAVSDQIRQDGLFHTFCGTPAYVAPEVLARKGYEAAKVDIWSCGVILFVLMAGYLPFHDQNIMAMYKKIYKGEFRCPRWFSPELIRLLTRLLDTNPETRFTIPEIMENKWFKKGYKHIKFYIEDDKVCSVEDGNDDVDSLSDQSQSESDSEIIETRRKVTSLPRPASLNAFDIISFSPGFDLSGLFEDGGEEARFVSSAPVSKIISKLEEIAKLVSFTVRKKDCRVSLEGSREGVKGPLTIAAEVFELTPKLVMVEVKRKGGDKAEYEQFCNNELKPALLNLKMEESAAPSHIPSDTE 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 37299559 37300962 - CrPI670011_04g019930.1 Cre04g1993 496297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g1993 467 FunFam Non-specific serine/threonine protein kinase 16 326 - -
Cre04g1993 467 ProSitePatterns Protein kinases ATP-binding region signature. 32 55 IPR017441 GO:0005524(InterPro)
Cre04g1993 467 Pfam NAF domain 334 390 IPR004041 GO:0007165(InterPro)
Cre04g1993 467 CDD STKc_SnRK3 25 279 - -
Cre04g1993 467 ProSiteProfiles Protein kinase domain profile. 26 280 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre04g1993 467 ProSiteProfiles NAF domain profile. 332 356 IPR018451 GO:0007165(InterPro)
Cre04g1993 467 Gene3D Kinase associated domain 1, KA1 334 452 - -
Cre04g1993 467 MobiDBLite consensus disorder prediction 303 322 - -
Cre04g1993 467 SMART serkin_6 26 280 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre04g1993 467 CDD CIPK_C 338 448 - -
Cre04g1993 467 FunFam Non-specific serine/threonine protein kinase 18 105 - -
Cre04g1993 467 Gene3D Transferase(Phosphotransferase) domain 1 17 333 - -
Cre04g1993 467 FunFam Non-specific serine/threonine protein kinase 334 452 - -
Cre04g1993 467 ProSitePatterns Serine/Threonine protein kinases active-site signature. 144 156 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre04g1993 467 SUPERFAMILY Protein kinase-like (PK-like) 22 321 IPR011009 -
Cre04g1993 467 Pfam Protein kinase domain 26 280 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre04g1993 467 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 14 446 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g0746 Cre-Chr4:25774086 Cre04g1993 Cre-Chr4:37299559 3.80E-131 dispersed
Cre04g1993 Cre-Chr4:37299559 Cre06g2099 Cre-Chr6:28784355 4.30E-144 dispersed
Cre10g2317 Cre-Chr10:37413708 Cre04g1993 Cre-Chr4:37299559 1.50E-35 wgd
Cre03g0960 Cre-Chr3:8448323 Cre04g1993 Cre-Chr4:37299559 2.50E-142 wgd
Cre04g1993 Cre-Chr4:37299559 Cre07g1403 Cre-Chr7:28935437 3.70E-21 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64093 PF00069 Pkinase 2.70E-76 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g1993 - - - 0.0