Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g1994 ATGGCCGACGATAAGGAAATGTCAGCCCCTGTCATTGATGGAAATGATCCAGTTACGGGTCACATAATATCCACGACTATTGGAGGCAAGAATGGGGAGCCCAAACAGACCATAAGCTACATGGCAGAACGTGTTGTTGGAACTGGATCATTTGGTATTGTTTTCAAGGCCAAATGCTTGGAAACGGGTGAAAATGTGGCTATAAAGAAGGTTTTGCAGGACAGAAGATATAAGAACCGTGAACTCCAGTTAATGCGTGTGATGGATCATCCAAATGTCATTTCCTTAAAGCATTGTTTCTTTTCCACTACTACAAAAGACGAACTTTTTCTCAACTTGGTAATGGAATATGTCCCTGAAACTATGTTTCGGGTTTTGAAGCATTACAGTAACGCAAATCAAAGAATGCCAATCATCTATGTCAAATTATACATGTACCAGGTTTTTAGGGGCCTGGCCTATATCCACACAGTTCCTGGAGTTTGTCACCGAGATTTGAAGCCTCAAAATATTTTGGTGGATCCCCTTACTCACCAAGTTAAAATATGCGATTTTGGAAGTGCAAAAATGCTTATGAAAGGTGAAGCCAATGTTTCATACATATGTTCACGCTTCTATAGAGCACCAGAACTCATCTTTGGAGCTACAGAGTACACAACTTCAATAGATATTTGGTCTGCTGGCTGTGTCCTTGCAGAGCTACTTTTGGGACAGCCTTTGTTTCCCGGAGAAAATGCAGTGGACCAGCTTGTAGAGATTATTAAGGTTCTTGGCACACCAACTCGTGAAGAAATTCGATGTATGAATCCAAGTTATACAGACTATAGGTTTCCACAGATAAAAGCTCACCCATGGCACAAGGTTTTCCACAAACGGATGCCTCCCGAGGCAATTGATCTGGCTTCTCGCTTGCTTCAGTATTCACCCAGTCTTCGCTGCACAGCACTGGAAGCTTGCACGCATCCTTTCTTTGACGAACTTCGAGAACCCAATGCTCGTCTCCCCAATGGTCGACCATTCCCACCCCTCTTTAATTTTAAACAAGAGCTGTCAGGTGCCTCTCCAGAGCTCGTTAACAAGTTGATACCTGATCAAGTGAAACGACAAATGGGTCTTAATTTGCATCTAGCAGTTTCAAATCCAACGGCTCATCATTGCCACACTCATCTGCAGTTCACAGCCAAGATGGAGAAATTATGGTCTTCACCACACAATGGATTTCCTCAGTCACAATCTCAGCCATTAAAAACACACACATCTCGAGATTTCCTGCGAGTTCTTGCGTCTTACACTTTGGCAGCTCTCGCTTTCGTTTTCCCTCCCCCTGCTTGTTTGGTAATGGAAGTTGTAAGAGTGGTTCTGTCGCTGTTCTTCCTCATCTGGGTGGTCTCTGCCTCAGACAGTCATTTGTCTCCCAAAGGAGTAAACTATGAAGTGGCGGCTTTGATATCAGTGAAGAGTAGGATAAGGGACGAGCGGGGAGTGATGCAAGGATGGGACATAAATTCGGTTGATCCATGCACCTGGAATATGGTTGCTTGCTCTGCTGAGAGCTTTGTGATTTCTCTTGAGATGCCAAATATGGGCTTATCTGGAACGCTTTCCCCTAGCATTGGGAACCTGAGTCATCTTCGGACAATGTTGTTGCAAAATAATGAGTTATCTGGTCCAATCCCAGATGATATAGGAGAACTTTCAGAGCTTCAGACTCTTGACCTTTCTAACAACCAATTTGTAGGCGGGATTCCAAGTTCTTTGGGGTTTCTCACTCATTTAAATTACTTGAAGCTCAGTAGTAACAAGTTAAGTGGACCAATACCGGAATCTGTTGCAAATATCTCAGGCCTCTCCTTTTTAGATTTATCGAATAATAATCTCAGCGGTCCAACTCCAAGAATACTTGCCAAAGAGTACAGTGTTGCAGGGAATAGCTTCCTTTGTGCATCTTCATCATCTAAATTTTGTGGTGTACTTCCAAAGCCAGTTAACGAAACTGGTTCGTCCCAGAAAGATAATGGCCGTCATCACATGGTTCTTTCAATAGCACTAATTGTCAGTTTCACATTTGTGGTTTCTGTTGTGTTACTTGTTGGCTGGGTGCATTGTTATAGATCTCATCTTGTCTTCACATCCTACGTGCAACAAGATTATGAATTTGATATAGGTCATCTGAAAAGGTTTACATTCCGTGAACTACAAAAGGCAACATGTAATTTTAGTCCCCAAAACATCCTGGGACAGGGTGGTTTTGGAGTAGTTTATAAAGGTTATCTTCCAAATGGGACATATGTTGCTGTCAAGAGACTGAAAGATCCGAATTACACTGGAGAAGTGCAGTTTCAAACTGAAGTTGAAATGATTGGCTTAGCAGTGCACCGCAACCTCCTGCGTCTGTATGGCTTTTGTATGACGCCAGATGAGAGATTGCTTGTTTATCCATATATGCCAAACGGGAGTGTTGCTGACCGTCTTAGAGATGCAGGCCAAGAGAAGCCTTCATTGAATTGGAACAGAAGATTGCGTATTGCCCTTGGTGCAGCTCGTGGACTCCTATACTTGCATGAGCAGTGTAACCCAAAAATTATTCACCGGGATGTGAAAGCTGCAAATATTCTTCTAGATGAAAGCTTTGAAGCCGTGGTTGGGGATTTCGGTCTGGCAAAGATGTTAGATAGGAGAGATTCACATGTTACTACTGCAGTTAGGGGCACAGTGGGACATATTGCCCCGGAATATCTTTCAACTGGACAATCTTCAGAAAAGACTGATGTTTTTGGATTTGGCATATTGGTTCTGGAACTCTTGACAGGGCAAAAAGCACTTGATGCTGGCAATGGTCAAATTCGAAAGGGAATGATCCTCGAATGGGTTAGAACATTACATGAGGAAAAGAGGTTAGATGTGCTGGTGGACAGGGATCTTAAAGGATGTTTTGATGCAATGGAGCTGGAAAAAGCTGTAGAGTTGGCTCTGCAGTGTACTCAATCGCATCCACAACTTAGACCAAAGATGTCCGAGATCCTGAAGATTCTAGAAGGTCTCGTTGGACAGTCGAGTCAAATGGAGGAATCACCAGGTGGAGCAAGTCTTTATGAGGATAGAACTCACAGTTTCTCCAGAAATTACAGTGATATTCATGAAGAATCTTCATTTGTTGTTGAAGCCATGGAGCTTTCCGGACCTCGGTGA 3189 43.09 MADDKEMSAPVIDGNDPVTGHIISTTIGGKNGEPKQTISYMAERVVGTGSFGIVFKAKCLETGENVAIKKVLQDRRYKNRELQLMRVMDHPNVISLKHCFFSTTTKDELFLNLVMEYVPETMFRVLKHYSNANQRMPIIYVKLYMYQVFRGLAYIHTVPGVCHRDLKPQNILVDPLTHQVKICDFGSAKMLMKGEANVSYICSRFYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENAVDQLVEIIKVLGTPTREEIRCMNPSYTDYRFPQIKAHPWHKVFHKRMPPEAIDLASRLLQYSPSLRCTALEACTHPFFDELREPNARLPNGRPFPPLFNFKQELSGASPELVNKLIPDQVKRQMGLNLHLAVSNPTAHHCHTHLQFTAKMEKLWSSPHNGFPQSQSQPLKTHTSRDFLRVLASYTLAALAFVFPPPACLVMEVVRVVLSLFFLIWVVSASDSHLSPKGVNYEVAALISVKSRIRDERGVMQGWDINSVDPCTWNMVACSAESFVISLEMPNMGLSGTLSPSIGNLSHLRTMLLQNNELSGPIPDDIGELSELQTLDLSNNQFVGGIPSSLGFLTHLNYLKLSSNKLSGPIPESVANISGLSFLDLSNNNLSGPTPRILAKEYSVAGNSFLCASSSSKFCGVLPKPVNETGSSQKDNGRHHMVLSIALIVSFTFVVSVVLLVGWVHCYRSHLVFTSYVQQDYEFDIGHLKRFTFRELQKATCNFSPQNILGQGGFGVVYKGYLPNGTYVAVKRLKDPNYTGEVQFQTEVEMIGLAVHRNLLRLYGFCMTPDERLLVYPYMPNGSVADRLRDAGQEKPSLNWNRRLRIALGAARGLLYLHEQCNPKIIHRDVKAANILLDESFEAVVGDFGLAKMLDRRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILVLELLTGQKALDAGNGQIRKGMILEWVRTLHEEKRLDVLVDRDLKGCFDAMELEKAVELALQCTQSHPQLRPKMSEILKILEGLVGQSSQMEESPGGASLYEDRTHSFSRNYSDIHEESSFVVEAMELSGPR 1062
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 37315942 37325290 + CrPI670011_04g019940.1 Cre04g1994 496298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g1994 1062 Gene3D Transferase(Phosphotransferase) domain 1 815 1023 - -
Cre04g1994 1062 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 453 1062 - -
Cre04g1994 1062 FunFam Putative LRR receptor-like serine/threonine-protein kinase 475 657 - -
Cre04g1994 1062 Gene3D Phosphorylase Kinase; domain 1 709 814 - -
Cre04g1994 1062 CDD STKc_GSK3 35 327 IPR039192 -
Cre04g1994 1062 Pfam Leucine rich repeat N-terminal domain 476 515 IPR013210 -
Cre04g1994 1062 Gene3D Transferase(Phosphotransferase) domain 1 120 367 - -
Cre04g1994 1062 FunFam Somatic embryogenesis receptor kinase 1 708 814 - -
Cre04g1994 1062 SUPERFAMILY Protein kinase-like (PK-like) 721 1012 IPR011009 -
Cre04g1994 1062 ProSitePatterns Serine/Threonine protein kinases active-site signature. 161 173 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre04g1994 1062 SUPERFAMILY Protein kinase-like (PK-like) 39 348 IPR011009 -
Cre04g1994 1062 Gene3D Phosphorylase Kinase; domain 1 25 119 - -
Cre04g1994 1062 SMART serkin_6 40 324 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre04g1994 1062 SMART serkin_6 739 1010 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre04g1994 1062 ProSiteProfiles Protein kinase domain profile. 739 1015 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre04g1994 1062 Pfam Leucine Rich Repeat 591 612 IPR001611 GO:0005515(InterPro)
Cre04g1994 1062 Pfam Leucine Rich Repeat 568 589 IPR001611 GO:0005515(InterPro)
Cre04g1994 1062 Pfam Leucine Rich Repeat 543 565 IPR001611 GO:0005515(InterPro)
Cre04g1994 1062 Pfam Leucine Rich Repeat 616 635 IPR001611 GO:0005515(InterPro)
Cre04g1994 1062 ProSitePatterns Serine/Threonine protein kinases active-site signature. 861 873 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre04g1994 1062 SUPERFAMILY L domain-like 477 637 - -
Cre04g1994 1062 ProSitePatterns Protein kinases ATP-binding region signature. 745 767 IPR017441 GO:0005524(InterPro)
Cre04g1994 1062 ProSiteProfiles Protein kinase domain profile. 40 324 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre04g1994 1062 FunFam Shaggy-related protein kinase kappa 120 367 - -
Cre04g1994 1062 FunFam Glycogen synthase kinase-3 beta 24 119 - -
Cre04g1994 1062 Gene3D Ribonuclease Inhibitor 475 657 IPR032675 -
Cre04g1994 1062 Pfam Protein kinase domain 742 1009 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre04g1994 1062 Pfam Protein kinase domain 40 324 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre04g1994 1062 ProSitePatterns Protein kinases ATP-binding region signature. 46 70 IPR017441 GO:0005524(InterPro)
Cre04g1994 1062 FunFam Somatic embryogenesis receptor-like kinase 1 815 1026 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2100 Cre-Chr2:34500308 Cre04g1994 Cre-Chr4:37315942 5.10E-200 dispersed
Cre04g1994 Cre-Chr4:37315942 Cre10g1549 Cre-Chr10:29478548 4.40E-181 dispersed
Cre06g2140 Cre-Chr6:29185208 Cre04g1994 Cre-Chr4:37315942 1.70E-127 transposed
Cre08g1725 Cre-Chr8:29510445 Cre04g1994 Cre-Chr4:37315942 1.10E-158 transposed
Cre09g1792 Cre-Chr9:36378118 Cre04g1994 Cre-Chr4:37315942 1.00E-145 transposed
Cre11g0996 Cre-Chr11:7251364 Cre04g1994 Cre-Chr4:37315942 5.20E-153 transposed
Cre10g2303 Cre-Chr10:37283586 Cre04g1994 Cre-Chr4:37315942 4.80E-38 wgd
Cre04g1994 Cre-Chr4:37315942 Cre07g0626 Cre-Chr7:4032851 6.00E-194 wgd
Cre04g1994 Cre-Chr4:37315942 Cre07g1399 Cre-Chr7:28896595 3.10E-65 wgd
Cre04g1994 Cre-Chr4:37315942 Cre09g0878 Cre-Chr9:8779490 6.90E-34 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64094 PF00069 Pkinase 1.20E-64 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g1994 - - - 0.0