Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g2005 ATGGGCCGTGAGAAGAAGCGACTTCCACGAGTAATGACTGTTGCGGGGGTAATATCAGAGCTTGATGATGATCAGGCAAATAGTGTGACTTCTGAGGGACCTTCGTCAGTGGTGCAAGACCGAATAATTATTGTTGCTAATCAGCTTCCTATTAAAGCTAAGCGTAGACCCGACAATAAAGGCTGGAGTTTTAGTTGGGATGAAGACTCTTTGCTGTGGCAGCTCAAGGATGGTTTACCTGAAGATATGGAGGTTTTGTATGTAGGATCTTTGCGGGTGGATGTTGATTCTTCCGAACAAGATGATGTATCACAGCTTTTGTTGGAGAGGTTTAAGTGCGTTCCTGCCTTTTTGCCTCATGACATTTTATCAAAATTTTATCATGGTTTTTGTAAGCAGCAATTGTGGCCACTCTTCCATTATATGCTTCCGTTCTCAGCGACTCATGGTGGTCGGTTTGATCGCTCTCTGTGGGAGGCATATGTAGCAGCAAATAAAATTTTTTCTCAAAGGGTGATTGAGGTCATAAACCCAGATGATGATTTTGTATGGATTCATGATTACCATTTAATGGTGCTGCCCTCCTTCTTGAGGAGAAGGTTTACAAGATTGAGAATGGGCTTTTTTCTTCACAGTCCATTTCCTTCGTCAGAAATATATAGGACATTGCCAGTGAGGGAAGAGATTCTTAAGGCACTTTTGAATGCAGACCTTATTGGCTTTCACACTTTCGACTATGCTCGACACTTCCTGTCTTGTTGTAGTCGGATGTTGGGTTTGGAATATCAGTCAAAGAGGGGTTATATTGGGTTGGAATATTTTGGAAGGACCGTGGGGATAAAGATCATGCCTGTTGGAATTCACATGGGCCAGATGGAGTCAGTGTTAAGACTTGCTGATAAAGACTGGAGGGTACAGGAGCTCAAAAGACAGTTTGAAGGAAAAGTTGTGTTACTTGGAGTTGATGACATGGACATTTTTAAAGGGGTCAATCTGAAGCTGTTGGCAATGGAACAAATGCTGAAGCAACATCCAAAGTGGCAGGGAAGAGCCGTTTTCATACAGATTGCAAACCCAGCTAGAGGGAGAGGGAAAGATCTCGAGGAAATACAAGATGAAATACAGGAATGCTGCAAAAGAATTAATGAAACTTTTGGACAGCCAAATTACGAGCCGATTGTGTTCATTGATCGGCCTGTTTCTCTCACTGAAAGAGCTGCGTATTATACGGTTGCTGAATGCGTTGTAGTCACAGCGGTGAGGGATGGTATGAACCTAACTCCTTATGAGTACGTTGTCTGCAGGCAGGGAACCTCTGGATCAGATTATAGCACAGAAACAAATGGACCCCAAAAAAGCATGCTAGTCATATCAGAGTTCATGGGATGTTCCCCTTCTCTTAGTGGTGCAATACGGGTTAACCCATGGAACATTGAAGCTACTGCTGAAGCATTGAATGAGGCAATATCAATGGCTGATGCTGAAAAGCAATTACGGCATGAAAAGCACTATAAATATGTGAGTACACATGATGTGGCGTACTGGTCAAGGAGTTTTTTCCAAGATATGGAAAGAACTTGTAAGGATCACTTCAGAAGACGGTGCTGGGGAATTGGGTTGGGCTTTGGTTTCAGAGTTGTAGCCCTTGATCCTAACTTTAGAAAGTTGTCTATTGATGCCATTGTAGCTGCATATTCAAGGTCTAAAAGGAGGGCTATACTTTTGGATTATGATGGCACTGTCATGCCACAAACATCAATTGATAAGACCCCAAGTCGTCAAGTTATTTCAATCATAGATTCACTTTGTGATGATGTTAGGAATACTGTTTTTGTTGTCAGTGGAAGAGGGCGTGAAAGTTTGGGTAATTGGTTTTCTTCTTGCGATAAACTTGGGATTGCTGCAGAGCATGGCTATTTTATGAGGTGGTCTGCTGATAAGGACTGGGAAAATTGTGGTCAAGGTAGTGATTTTGGCTGGATACAGATTGCAGAGCCAGTCATGAAATTATATACAGAAGCTACTGACGGGTCTTCCATTGAAACCAAGGAAAGTGCCTTGGTGTGGCACCACCAGGATGCGGACCCTGATTTTGGTTGCAGCCAGGCCAAGGAACTGTTGGATCACCTTGAAAGTGTGCTGGCAAATGAACCAGTTGCTGTGAAAAGTGGTCAGTTTATTGTAGAAGTGAAGCCACAGGGAGTCAGTAAAGGTTTGGTGGCAGAAAAGATCTTCACGTCAATGGCAGATGCAGGAAGACGGGCTGATTTTGTGCTATGCATCGGTGATGATAGATCTGATGAAGACATGTTTGAGATCATTGGTAATGCAGTGTCAAGTGGCGCCCTCTCTTCCAATACATTAGTTTTTGCCTGCACAGTTGGACAGAAACCAAGCAAGGCCAAGTATTACTTAGATGACACAACTGAGGTCATAAATATGCTTGAAGCCCTTGCAGAAGTTTCAGACATTTCTTCTCCTCCAGAATCCCCTTGA 2496 43.11 MGREKKRLPRVMTVAGVISELDDDQANSVTSEGPSSVVQDRIIIVANQLPIKAKRRPDNKGWSFSWDEDSLLWQLKDGLPEDMEVLYVGSLRVDVDSSEQDDVSQLLLERFKCVPAFLPHDILSKFYHGFCKQQLWPLFHYMLPFSATHGGRFDRSLWEAYVAANKIFSQRVIEVINPDDDFVWIHDYHLMVLPSFLRRRFTRLRMGFFLHSPFPSSEIYRTLPVREEILKALLNADLIGFHTFDYARHFLSCCSRMLGLEYQSKRGYIGLEYFGRTVGIKIMPVGIHMGQMESVLRLADKDWRVQELKRQFEGKVVLLGVDDMDIFKGVNLKLLAMEQMLKQHPKWQGRAVFIQIANPARGRGKDLEEIQDEIQECCKRINETFGQPNYEPIVFIDRPVSLTERAAYYTVAECVVVTAVRDGMNLTPYEYVVCRQGTSGSDYSTETNGPQKSMLVISEFMGCSPSLSGAIRVNPWNIEATAEALNEAISMADAEKQLRHEKHYKYVSTHDVAYWSRSFFQDMERTCKDHFRRRCWGIGLGFGFRVVALDPNFRKLSIDAIVAAYSRSKRRAILLDYDGTVMPQTSIDKTPSRQVISIIDSLCDDVRNTVFVVSGRGRESLGNWFSSCDKLGIAAEHGYFMRWSADKDWENCGQGSDFGWIQIAEPVMKLYTEATDGSSIETKESALVWHHQDADPDFGCSQAKELLDHLESVLANEPVAVKSGQFIVEVKPQGVSKGLVAEKIFTSMADAGRRADFVLCIGDDRSDEDMFEIIGNAVSSGALSSNTLVFACTVGQKPSKAKYYLDDTTEVINMLEALAEVSDISSPPESP 831
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 37399977 37404260 + CrPI670011_04g020050.1 Cre04g2005 496309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g2005 831 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 34 293 - -
Cre04g2005 831 FunFam Trehalose-6-phosphate synthase 2 654 733 - -
Cre04g2005 831 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 6 821 IPR001830 GO:0003824(InterPro)|GO:0004805(PANTHER)|GO:0005829(PANTHER)|GO:0005992(PANTHER)|GO:0005992(InterPro)|GO:0070413(PANTHER)
Cre04g2005 831 FunFam Alpha,alpha-trehalose-phosphate synthase 295 508 - -
Cre04g2005 831 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 700 830 - -
Cre04g2005 831 NCBIfam trehalose-phosphatase 568 819 IPR003337 GO:0005992(InterPro)
Cre04g2005 831 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 570 687 - -
Cre04g2005 831 NCBIfam HAD-IIB family hydrolase 573 779 IPR006379 -
Cre04g2005 831 Pfam Trehalose-phosphatase 574 808 IPR003337 GO:0005992(InterPro)
Cre04g2005 831 CDD HAD_TPP 572 813 - -
Cre04g2005 831 Pfam Glycosyltransferase family 20 41 524 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Cre04g2005 831 Gene3D Glycogen Phosphorylase B; 31 301 - -
Cre04g2005 831 Gene3D - 570 676 IPR023214 -
Cre04g2005 831 Gene3D - 700 826 IPR023214 -
Cre04g2005 831 Gene3D Glycogen Phosphorylase B; 302 509 - -
Cre04g2005 831 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 40 528 - -
Cre04g2005 831 SUPERFAMILY HAD-like 571 819 IPR036412 -
Cre04g2005 831 CDD GT20_TPS 41 524 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g2005 Cre-Chr4:37399977 Cre10g0401 Cre-Chr10:2861517 0.00E+00 dispersed
Cre04g2005 Cre-Chr4:37399977 Cre07g0616 Cre-Chr7:3955023 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g2005 K16055 - csv:101213082 1652.49