Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g2010 ATGATTTCTTGTCCGTATGAAAAGCAGAGGACTGCTAATTTGTCTGTTAATTTAGGAGGTGGCTATGGTGAGTGGAAGCTCGACATTTGGTCGATGGACGAAGCGCAGGCCAGTTCCAACACGTTGCCTCCTTTCCTGACAAAGACTTACGAGATGGTCAATGATCCTTCCACGGACCCAGTTGTATCCTGGACTTCAGGTAATAAGAGCTTTATTGTGTGGAACCCATTGGAGTTTTCGAGTGACCTGCTGCCGAGATTCTTCAAGCATAACAATTTCTCGAGCTTCATTAGACAGCTTAATACATATGGCTTTAGGAAAGTGGATCCAGAGAAATGGGAATTTGCAAATGAGGATTTTGAAAAGGGTCGACCAGACCTTTTGCGGAACATCCACAGGCGAAAACCAGTTCATAGTCATTCATTGCAGAATGTTCAAGGACAAGGACTTCCATCTCCATTGTTGGATCTTGAAAGGAAGAGATTCAAGGAAGAGATTGAGAAGCTTAAGCACACTAATGAAAAGCTTCTTCTGGAGTCGCAGAGACATGAACAAGAGCATCGTGATTTGCAGTTGCAAATGCAATTAATGAAGAACCGGTTTCAGTGTATGCAGCAACAGCAGCAAACATTGCTTTCTAATGTTGCTCATGTTTTGCAGAAACCAGAATTGACGATTTATTTTGTGCCAGAATCAGATTCTCATGATAGAAAGAGGAGGTTGGCAACAGTCACCTACTATTACAACGAATCCAGTGCTGAGGATGATCTAGCAGAGCATTCCCATTCAATGTCAAAACAGCAAGTAGATTATTCTTCAACCTCAGACTTTAACATGGAGCAGCTTGACCAGTTAGATTCATTTCTAACATTTTGGGAGAGGACCATTCATGATGTTGATCGAACTATCATTCTACCTAACCTGAAGTCGAATCAAACCAAAAGAGACATCCAAAGCCCACCAACTCCTTTACAACTAGATAGGAATCATCAGTCCAAGTCACATGTTATTGACATGAATTCAGAGCCTGTTGGAAGTATTGCTTCTGATTCCATTGCATCAAGAAAAGAAGCCGGTGAAACAACTGTGATTGCACGTAACGGGGCTAATGATGTGTTTTGGGAACAGTTCTTGACTGAGAATCCTGGTTCATCCGATCTTCCAAAAGTTGCATCTGAAGGAAATGAGTCTGATAATGGTAGAAAGAATGAGAGTAAGCCCAGAGGCTTTGGAAAACTTTGGTGGACTGGGAACAAGATAAATAACCTTGCAGATCAGATGGAACACCTTACTCCAACTGAGAAAACATGA 1311 41.88 MISCPYEKQRTANLSVNLGGGYGEWKLDIWSMDEAQASSNTLPPFLTKTYEMVNDPSTDPVVSWTSGNKSFIVWNPLEFSSDLLPRFFKHNNFSSFIRQLNTYGFRKVDPEKWEFANEDFEKGRPDLLRNIHRRKPVHSHSLQNVQGQGLPSPLLDLERKRFKEEIEKLKHTNEKLLLESQRHEQEHRDLQLQMQLMKNRFQCMQQQQQTLLSNVAHVLQKPELTIYFVPESDSHDRKRRLATVTYYYNESSAEDDLAEHSHSMSKQQVDYSSTSDFNMEQLDQLDSFLTFWERTIHDVDRTIILPNLKSNQTKRDIQSPPTPLQLDRNHQSKSHVIDMNSEPVGSIASDSIASRKEAGETTVIARNGANDVFWEQFLTENPGSSDLPKVASEGNESDNGRKNESKPRGFGKLWWTGNKINNLADQMEHLTPTEKT 436
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 37437243 37439147 - CrPI670011_04g020100.1 Cre04g2010 496314

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g2010 436 Gene3D - 37 135 IPR036388 -
Cre04g2010 436 MobiDBLite consensus disorder prediction 380 414 - -
Cre04g2010 436 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 35 396 IPR027725 GO:0000978(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)|GO:0034605(PANTHER)
Cre04g2010 436 MobiDBLite consensus disorder prediction 312 335 - -
Cre04g2010 436 FunFam Heat shock transcription factor 1 38 135 - -
Cre04g2010 436 Coils Coil 159 207 - -
Cre04g2010 436 PRINTS Heat shock factor (HSF) domain signature 96 108 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre04g2010 436 PRINTS Heat shock factor (HSF) domain signature 45 68 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre04g2010 436 PRINTS Heat shock factor (HSF) domain signature 83 95 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre04g2010 436 SMART hsfneu3 41 134 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre04g2010 436 Pfam HSF-type DNA-binding 45 134 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre04g2010 436 SUPERFAMILY Winged helix DNA-binding domain 41 134 IPR036390 -
Cre04g2010 436 ProSitePatterns HSF-type DNA-binding domain signature. 84 108 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g2010 K09419 - - csv:101219535 740.725
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g2010 Cre-Chr4:37437243 Cre05g0397 Cre-Chr5:3611546 1.70E-46 dispersed
Cre02g2132 Cre-Chr2:34871966 Cre04g2010 Cre-Chr4:37437243 5.20E-50 wgd
Cre03g0980 Cre-Chr3:8655234 Cre04g2010 Cre-Chr4:37437243 1.00E-104 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi10g260 Blo01g00868 Blo11g00264 . . . . Bma14g00978 Bma01g01469 Cmo13g00611 . . Cma07g00159 . Car07g00139 . . . . . . . . . . Cla01g02342 Cam01g2455 Cec04g2104 Cco04g2180 Clacu01g2475 Cmu01g2342 Cre04g2010 . Cone5ag1639 . . Lsi01g00219 Csa06g03726 Chy12g00055 Cme08g00202 . . . Bda07g00962 . . . . Sed08g2732 . Cmo07g00157 Cma13g00581 . Car13g00464 . Cpe19g01087 Cpe20g00480 Bhi08g02149 Tan05g2532 Cmetu12g1147 Lac10g0985 Hepe07g1835 . . Cla03g00695 Cam03g0699 Cec03g0671 Cco03g0708 Clacu03g0743 Cmu03g1335 Cre03g0980 Lsi02g00833 Csa01g02297 Chy02g00208 Cme12g01263
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre05g0597 . 37 237 HSF AT4G17750 59.6 1.9e-62 237.3
Cre09g0695 . 57 297 HSF AT4G17750 51.4 1.8e-60 230.7
Cre08g1648 . 42 242 HSF AT4G17750 55.0 1.7e-58 224.2
Cre03g0980 . 13 192 HSF AT4G17750 50.8 7.0e-44 175.6
Cre08g1547 . 14 118 HSF AT4G17750 69.5 3.9e-39 159.8
Cre09g2219 . 368 490 HSF AT4G17750 61.8 3.9e-39 159.8
Cre05g2189 . 20 118 HSF AT4G17750 69.7 2.6e-38 157.1
Cre05g0597 . 38 242 HSF AT5G16820 57.0 5.1e-60 229.2
Cre07g0420 . 41 258 HSF AT5G16820 52.2 9.7e-59 224.9
Cre09g0695 . 58 269 HSF AT5G16820 54.2 2.4e-57 220.3
Cre08g1648 . 43 253 HSF AT5G16820 51.1 3.8e-55 213.0
Cre04g2010 . 40 222 HSF AT5G16820 50.3 5.7e-43 172.6
Cre06g1660 . 10 176 HSF AT5G16820 51.6 6.3e-42 169.1
Cre10g0400 . 13 515 HSF AT1G32330 53.0 3.1e-121 432.6
Cre05g0597 . 26 227 HSF AT1G32330 54.0 1.1e-59 228.0
Cre09g0695 . 46 265 HSF AT1G32330 51.8 6.3e-58 222.2
Cre08g1648 . 31 223 HSF AT1G32330 54.6 3.8e-55 213.0
Cre08g1547 . 20 117 HSF AT1G32330 72.4 3.3e-38 156.8
Cre07g0420 . 41 262 HSF AT3G02990 52.2 9.1e-62 235.0
Cre05g0597 . 38 241 HSF AT3G02990 57.6 2.7e-61 233.4
Cre09g0695 . 58 280 HSF AT3G02990 52.2 1.2e-58 224.6
Cre08g1648 . 43 242 HSF AT3G02990 51.7 4.9e-55 212.6
Cre06g1660 . 10 172 HSF AT3G02990 50.3 4.0e-41 166.4
Cre05g0597 . 25 298 HSF AT2G26150 50.5 3.3e-69 259.2
Cre09g0695 . 46 264 HSF AT2G26150 54.5 2.5e-64 243.0
Cre10g0400 . 8 243 HSF AT2G26150 55.7 3.3e-61 232.6
Cre03g0980 . 5 156 HSF AT2G26150 52.0 1.1e-40 164.5
Cre02g2132 . 2 189 HSF AT4G18880 52.7 9.6e-52 201.4
Cre05g0397 . 6 353 HSF AT4G13980 56.9 1.6e-103 373.6
Cre05g0597 . 26 218 HSF AT5G43840 54.4 1.7e-55 213.4
Cre08g1648 . 31 234 HSF AT5G43840 50.5 1.2e-45 180.6
Cre09g0695 . 46 382 HSF AT3G22830 53.5 4.3e-92 335.5
Cre07g0420 . 16 350 HSF AT3G22830 50.9 2.1e-86 316.6
Cre08g1648 . 31 253 HSF AT3G22830 54.1 1.7e-64 243.8
Cre10g0400 . 29 242 HSF AT3G22830 58.9 1.2e-62 237.7
Cre09g0695 . 45 357 HSF AT3G51910 51.3 1.6e-71 266.5
Cre07g0420 . 26 322 HSF AT3G51910 52.5 2.0e-69 259.6
Cre08g1648 . 31 223 HSF AT3G51910 56.0 4.1e-54 208.8
Cre08g1648 . 31 230 HSF AT3G63350 52.5 2.8e-50 196.1
Cre02g2132 . 5 140 HSF AT3G63350 56.6 5.5e-38 155.2
Cre09g0695 . 59 251 HSF AT1G67970 50.3 4.0e-44 176.0
Cre04g1306 . 2 296 HSF AT4G36990 52.0 2.2e-71 266.2
Cre08g1547 . 17 115 HSF AT5G62020 67.7 2.0e-38 156.8
Cre09g2219 . 391 712 HSF AT4G11660 51.8 2.3e-79 293.1
Cre08g1547 . 16 121 HSF AT4G11660 71.7 4.1e-44 176.0
Cre04g1306 . 2 107 HSF AT4G11660 71.7 3.8e-42 169.5
Cre03g1504 . 20 119 HSF AT4G11660 68.0 1.1e-38 157.9
Cre10g0400 . 33 126 HSF AT4G11660 69.1 1.8e-36 150.6
Cre04g0452 . 30 237 HSF AT2G41690 53.7 1.6e-49 193.4
Cre10g1708 . 14 222 HSF AT2G41690 55.3 1.1e-47 187.2
Cre08g1547 . 9 373 HSF AT1G46264 52.2 8.5e-89 324.3
Cre05g2189 . 1 238 HSF AT1G46264 63.8 2.2e-81 299.7
Cre03g1504 . 19 200 HSF AT1G46264 51.9 3.2e-51 199.5
Cre10g0400 . 33 138 HSF AT1G46264 73.6 3.9e-41 166.0
Cre10g1708 . 21 118 HSF AT1G46264 69.4 5.8e-37 152.1
Cre02g2132 . 5 105 HSF AT1G46264 67.3 7.6e-37 151.8
Cre05g0597 . 37 237 HSF AT4G17750 59.6 1.9e-62 237.3
Cre09g0695 . 57 297 HSF AT4G17750 51.4 1.8e-60 230.7
Cre08g1648 . 42 242 HSF AT4G17750 55.0 1.7e-58 224.2
Cre03g0980 . 13 192 HSF AT4G17750 50.8 7.0e-44 175.6
Cre08g1547 . 14 118 HSF AT4G17750 69.5 3.9e-39 159.8
Cre09g2219 . 368 490 HSF AT4G17750 61.8 3.9e-39 159.8
Cre05g2189 . 20 118 HSF AT4G17750 69.7 2.6e-38 157.1
Cre05g0597 . 38 242 HSF AT5G16820 57.0 5.1e-60 229.2
Cre07g0420 . 41 258 HSF AT5G16820 52.2 9.7e-59 224.9
Cre09g0695 . 58 269 HSF AT5G16820 54.2 2.4e-57 220.3
Cre08g1648 . 43 253 HSF AT5G16820 51.1 3.8e-55 213.0
Cre04g2010 . 40 222 HSF AT5G16820 50.3 5.7e-43 172.6
Cre06g1660 . 10 176 HSF AT5G16820 51.6 6.3e-42 169.1
Cre10g0400 . 13 515 HSF AT1G32330 53.0 3.1e-121 432.6
Cre05g0597 . 26 227 HSF AT1G32330 54.0 1.1e-59 228.0
Cre09g0695 . 46 265 HSF AT1G32330 51.8 6.3e-58 222.2
Cre08g1648 . 31 223 HSF AT1G32330 54.6 3.8e-55 213.0
Cre08g1547 . 20 117 HSF AT1G32330 72.4 3.3e-38 156.8
Cre07g0420 . 41 262 HSF AT3G02990 52.2 9.1e-62 235.0
Cre05g0597 . 38 241 HSF AT3G02990 57.6 2.7e-61 233.4
Cre09g0695 . 58 280 HSF AT3G02990 52.2 1.2e-58 224.6
Cre08g1648 . 43 242 HSF AT3G02990 51.7 4.9e-55 212.6
Cre06g1660 . 10 172 HSF AT3G02990 50.3 4.0e-41 166.4
Cre05g0597 . 25 298 HSF AT2G26150 50.5 3.3e-69 259.2
Cre09g0695 . 46 264 HSF AT2G26150 54.5 2.5e-64 243.0
Cre10g0400 . 8 243 HSF AT2G26150 55.7 3.3e-61 232.6
Cre03g0980 . 5 156 HSF AT2G26150 52.0 1.1e-40 164.5
Cre02g2132 . 2 189 HSF AT4G18880 52.7 9.6e-52 201.4
Cre05g0397 . 6 353 HSF AT4G13980 56.9 1.6e-103 373.6
Cre05g0597 . 26 218 HSF AT5G43840 54.4 1.7e-55 213.4
Cre08g1648 . 31 234 HSF AT5G43840 50.5 1.2e-45 180.6
Cre09g0695 . 46 382 HSF AT3G22830 53.5 4.3e-92 335.5
Cre07g0420 . 16 350 HSF AT3G22830 50.9 2.1e-86 316.6
Cre08g1648 . 31 253 HSF AT3G22830 54.1 1.7e-64 243.8
Cre10g0400 . 29 242 HSF AT3G22830 58.9 1.2e-62 237.7
Cre09g0695 . 45 357 HSF AT3G51910 51.3 1.6e-71 266.5
Cre07g0420 . 26 322 HSF AT3G51910 52.5 2.0e-69 259.6
Cre08g1648 . 31 223 HSF AT3G51910 56.0 4.1e-54 208.8
Cre08g1648 . 31 230 HSF AT3G63350 52.5 2.8e-50 196.1
Cre02g2132 . 5 140 HSF AT3G63350 56.6 5.5e-38 155.2
Cre09g0695 . 59 251 HSF AT1G67970 50.3 4.0e-44 176.0
Cre04g1306 . 2 296 HSF AT4G36990 52.0 2.2e-71 266.2
Cre08g1547 . 17 115 HSF AT5G62020 67.7 2.0e-38 156.8
Cre09g2219 . 391 712 HSF AT4G11660 51.8 2.3e-79 293.1
Cre08g1547 . 16 121 HSF AT4G11660 71.7 4.1e-44 176.0
Cre04g1306 . 2 107 HSF AT4G11660 71.7 3.8e-42 169.5
Cre03g1504 . 20 119 HSF AT4G11660 68.0 1.1e-38 157.9
Cre10g0400 . 33 126 HSF AT4G11660 69.1 1.8e-36 150.6
Cre04g0452 . 30 237 HSF AT2G41690 53.7 1.6e-49 193.4
Cre10g1708 . 14 222 HSF AT2G41690 55.3 1.1e-47 187.2
Cre08g1547 . 9 373 HSF AT1G46264 52.2 8.5e-89 324.3
Cre05g2189 . 1 238 HSF AT1G46264 63.8 2.2e-81 299.7
Cre03g1504 . 19 200 HSF AT1G46264 51.9 3.2e-51 199.5
Cre10g0400 . 33 138 HSF AT1G46264 73.6 3.9e-41 166.0
Cre10g1708 . 21 118 HSF AT1G46264 69.4 5.8e-37 152.1
Cre02g2132 . 5 105 HSF AT1G46264 67.3 7.6e-37 151.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001764 2 9 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 1 2 5 4 2 69
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53549 PF00447 HSF_DNA-bind 3.60E-31 CL0123 Cre TF