Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g2013 ATGGCTGAGATTTCAGGATCAAGCAATGGACATCACACTGTTTCTTTGAACGTCAAAGATGAATCCACAGCCGTCACCAGCAGAGAAGTAGCAGCTGACTGGCTCTCTGTACCTTTCATTCAAAAGTTGATCGCAGAGATTGTGGGGACATATTTCTTGATATTTGCTGGTGGGGCATCAGTGGTTGTGAATTTGAGCAAAGACAAAGTGATCACTTTCCCAGGGATTTCAATTGTTTGGGGTTTGGTTGTAATGGTGATGGTTTATTCTGTTGGTCATATCTCTGGTGCTCATTTCAACCCTGCTGTTACCATAGCCTTTGCCACTACCAAGAGATTTCCATGGAAACAGGTGCCAGCTTATGTGATAGCTCAAGTTCTTGGATCAACATTGGCAGCTGGGACACTTAGGCTAATATTTAATGGACACCAAGACCATTTCTCGGGGACCCTCCCAAGTGACTCATATTTGCAAACCTTTGTGATTGAATTCATCATCACATTTTACCTCATGTTTGTAGTGTCTGGTGTTGCCACTGATAATAGAGCTATTGGTGAACTTGCTGGACTTGCTGTTGGTGCTACTGTTCTTCTCAACGTGATGTTTGCAGGGCCAATTACAGGAGCATCCATGAATCCAGCCAGAAGCTTGGGACCTGCTATAGTATCAAGGCAGTTCAAAGGGTTGTGGATTTACATTGTAGCTCCCATTTTTGGGGCAATTTCAGGTGCTTTGGTTTACAATACCATCAGATTAATGTCGGGAGTCACGAGTAAAACTATGAATAAGGCACATCTGGATAAGGATAAGTCCGAACTTCTTGATGGCTGCCTGCCAGTTCACATGAATCTTATTGGTGAACTTGCTGCCGGTGCTACTGTACCTCTCAATGTGATGATTGTAGGGCATTAA 912 43.64 MAEISGSSNGHHTVSLNVKDESTAVTSREVAADWLSVPFIQKLIAEIVGTYFLIFAGGASVVVNLSKDKVITFPGISIVWGLVVMVMVYSVGHISGAHFNPAVTIAFATTKRFPWKQVPAYVIAQVLGSTLAAGTLRLIFNGHQDHFSGTLPSDSYLQTFVIEFIITFYLMFVVSGVATDNRAIGELAGLAVGATVLLNVMFAGPITGASMNPARSLGPAIVSRQFKGLWIYIVAPIFGAISGALVYNTIRLMSGVTSKTMNKAHLDKDKSELLDGCLPVHMNLIGELAAGATVPLNVMIVGH 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 37457803 37460506 + CrPI670011_04g020130.1 Cre04g2013 496317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g2013 303 ProSitePatterns MIP family signature. 98 106 IPR022357 -
Cre04g2013 303 Pfam Major intrinsic protein 35 247 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre04g2013 303 Gene3D Glycerol uptake facilitator protein. 5 264 IPR023271 -
Cre04g2013 303 PANTHER AQUAPORIN NIP2-1 30 253 IPR034294 -
Cre04g2013 303 CDD MIP 41 250 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre04g2013 303 PRINTS Major intrinsic protein family signature 162 180 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre04g2013 303 PRINTS Major intrinsic protein family signature 41 60 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre04g2013 303 PRINTS Major intrinsic protein family signature 193 215 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre04g2013 303 PRINTS Major intrinsic protein family signature 80 104 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre04g2013 303 PRINTS Major intrinsic protein family signature 230 250 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre04g2013 303 PRINTS Major intrinsic protein family signature 117 136 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre04g2013 303 NCBIfam MIP family channel protein 45 247 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre04g2013 303 SUPERFAMILY Aquaporin-like 35 251 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g2013 Cre-Chr4:37457803 Cre10g1640 Cre-Chr10:30584880 4.80E-56 dispersed
Cre05g0662 Cre-Chr5:5828138 Cre04g2013 Cre-Chr4:37457803 2.50E-34 transposed
Cre05g1275 Cre-Chr5:12977612 Cre04g2013 Cre-Chr4:37457803 4.20E-72 transposed
Cre07g1571 Cre-Chr7:31176703 Cre04g2013 Cre-Chr4:37457803 1.50E-57 transposed
Cre10g2298 Cre-Chr10:37239567 Cre04g2013 Cre-Chr4:37457803 2.60E-19 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g2013 K09874 - csv:101219297 464.536