Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre04g2018 | ATGGCGAACCCAGAATCCGCCCCTATCCAACCCTCTGAAGGGGAAAAGAACGTGTATTCTGTGTGGGCTCTTCCTCCGGAAGATGTGACGGCCAGAATCAAGAACCTCATGAACAGCCTCATATCCGAGTTCGGCGGTCCCCAATTCGAGCCACATATCACCGTTGTTGGGGCAATCCGTCTCACCCCTGACGATGCCCTCAACAAATTCCGCTCCGCTTGCCAGGGGCTCAAGGCTTATCAAGCCACCGTCGATCATGTATCTACCGGAACCTTCTTCTACCAGTGTGTTTTTCTCCTTATTCATCCTACCACTGAGGTGGTGGAGACTAGTTCACATTGCTGTGCACATTTTGGTTACAAAAACTCTACCCCTTACATGCCGCATATGAGCCTACTGTATGCCAACATATCAGATGAAAAAAAGAAGCAAGCAAAAGATATAGCAGACAAGCTTGATGAAGCCGTGAATGGCCTGAAGTTCCCAATCACTCGACTTGCACTGTACAAAACAGACACCGAGGATCAAACTCTGAAGTCCTGGGAGAAAATTGCAGAACACGATCTTCCTTCAAGGAGGAAAAACCAAGCTTCATTGCTGAAGGAAGATTACAGAAATTACTGCATGCTCTTCCATTTGGTGAAAAGATCGCAAATGCTGAGATACCCTTTACAGCATCAGAAGCCTACAAAAACAGTCATGGATAGTCCAGTGAGGTTTAAGTTGGGGAAACAGTCGTCCCTGGCGCCGGATGGGCATCTCGAAGATTTGGAGGAGCTAGTCAAGCAGGACCAAACTGAGGAGGGGATAGATTCGAGGGTGAGGTTGATGTACTTGGCCAATGAAGGTGATTTGGAAGGGATTAATGAACTGTTGGATTCGGGAGTCGATGTCAATTTCCATGATATCGACAACCGGACGGCTCTGCATATTGCTGCTTGCCAGGGATTCGCCGACGTTGTCGCTTTGTTGCTCGGACGTGGCGCTGAAGTTGACTCCAAAGATCGCTGGGGGAGCACGCCTCTTAGGGATGCTGTACATTACAAAAACCACGATGTGATCAAACTTCTGGAGAAGCATGGTGCAAAGCCTCCGGTGGCCCCCATGCTCGTCAAGAATGCCCGTGAAGTTCCAGATTATGAAATTGATCCTAAGGAACTTGATTTTACTAACAGCGTGAACATTACCAAGGGAACATTCCGCAAAGCATCTTGGCGTGGAACTGAGGTTGCTGTGAAAGAGCTTGGAGAAGATCTATTCACTGATGAGGATAAAGTGAGGGCTTTCAGAGATGAGCTTGCATTGCTTCAGAAAATACGACACCCCAATGTTGTCCAGTTTCTTGGTGCCGTTACTCAAAGTTGGCCGATGATGATCGTTACAGAATATTTACCAAAGGGAGATCTAGGAGCATTATTGAGTAGAAAAAGAGAAATAAAAATAATGACGGTTGTGAGACTTGCCCTTGATATTGCAAGGGGGATGAATTATTTGCATGAGAACAAGCCAACACCAATTATTCATCGTAATCTTGAGCCTTCAAATATTCTGAGGGATGATTCTGGCCATCTGAAAGTAGCAAATTTTGGAGTTAGCAAGTTATTGAAAGTTAAAGAAGATACACCTTCGACTCATTCAGAGACTTCACGAAGATATGAAGCTCCGGAGGTTTTCAAAAATGAAGAATATGACACAAAGGTGGATGTGTTTTCTTTTGCTTTGATTTTACAAGAGATGATTGAAGGCTGTCCTCCATTTCCTGACAAGGCAGATAGTGAAGTTCCTAAATTGTATGCAGCAGGAGAACGTCCCCCATTTAGAGCATCACTTAAACGTTTTGCAAATGGACTAAAAGAGCTAATTGAAGAATGTTGGAATGAGAAGCCAAATAGTAGACCAACTTTTAGGCAGATAATAACCCAGCTGGAATTCATTTACAACAGATTCGGTCATAAGAGGCGCTGGAAGGTCAGGCCATTGAAATGCTTCCAGAATATTGAGGCAATGTTGAAGAGAGATCGTTCCCGTCGGAGCAGTTTCAATCTTTCGTCACATTCTTCTGCCAGCAGTATATGA | 2076 | 44.99 | MANPESAPIQPSEGEKNVYSVWALPPEDVTARIKNLMNSLISEFGGPQFEPHITVVGAIRLTPDDALNKFRSACQGLKAYQATVDHVSTGTFFYQCVFLLIHPTTEVVETSSHCCAHFGYKNSTPYMPHMSLLYANISDEKKKQAKDIADKLDEAVNGLKFPITRLALYKTDTEDQTLKSWEKIAEHDLPSRRKNQASLLKEDYRNYCMLFHLVKRSQMLRYPLQHQKPTKTVMDSPVRFKLGKQSSLAPDGHLEDLEELVKQDQTEEGIDSRVRLMYLANEGDLEGINELLDSGVDVNFHDIDNRTALHIAACQGFADVVALLLGRGAEVDSKDRWGSTPLRDAVHYKNHDVIKLLEKHGAKPPVAPMLVKNAREVPDYEIDPKELDFTNSVNITKGTFRKASWRGTEVAVKELGEDLFTDEDKVRAFRDELALLQKIRHPNVVQFLGAVTQSWPMMIVTEYLPKGDLGALLSRKREIKIMTVVRLALDIARGMNYLHENKPTPIIHRNLEPSNILRDDSGHLKVANFGVSKLLKVKEDTPSTHSETSRRYEAPEVFKNEEYDTKVDVFSFALILQEMIEGCPPFPDKADSEVPKLYAAGERPPFRASLKRFANGLKELIEECWNEKPNSRPTFRQIITQLEFIYNRFGHKRRWKVRPLKCFQNIEAMLKRDRSRRSSFNLSSHSSASSI | 691 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 37481255 | 37489653 | + | CrPI670011_04g020180.1 | Cre04g2018 | 496322 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre04g2018 | 691 | Gene3D | Cyclic phosphodiesterase | 12 | 197 | - | - | |
Cre04g2018 | 691 | FunFam | Cyclic phosphodiesterase | 13 | 192 | - | - | |
Cre04g2018 | 691 | FunFam | Integrin-linked protein kinase family | 253 | 380 | - | - | |
Cre04g2018 | 691 | Gene3D | Transferase(Phosphotransferase) domain 1 | 465 | 687 | - | - | |
Cre04g2018 | 691 | ProSiteProfiles | Protein kinase domain profile. | 354 | 645 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cre04g2018 | 691 | Gene3D | - | 244 | 376 | IPR036770 | - | |
Cre04g2018 | 691 | Pfam | Protein tyrosine and serine/threonine kinase | 394 | 642 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cre04g2018 | 691 | SUPERFAMILY | LigT-like | 16 | 189 | IPR009097 | - | |
Cre04g2018 | 691 | PANTHER | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED | 272 | 643 | IPR051681 | GO:0004674(PANTHER) | |
Cre04g2018 | 691 | CDD | STKc_MAP3K-like | 395 | 642 | - | - | |
Cre04g2018 | 691 | FunFam | Integrin-linked protein kinase family | 465 | 658 | - | - | |
Cre04g2018 | 691 | Gene3D | Phosphorylase Kinase; domain 1 | 381 | 464 | - | - | |
Cre04g2018 | 691 | Pfam | 2'-5' RNA ligase superfamily | 48 | 173 | - | - | |
Cre04g2018 | 691 | SUPERFAMILY | Protein kinase-like (PK-like) | 398 | 646 | IPR011009 | - | |
Cre04g2018 | 691 | Pfam | Ankyrin repeats (3 copies) | 276 | 364 | IPR002110 | GO:0005515(InterPro) | |
Cre04g2018 | 691 | FunFam | serine/threonine-protein kinase STY46-like | 382 | 465 | - | - | |
Cre04g2018 | 691 | ProSiteProfiles | Ankyrin repeat profile. | 304 | 336 | IPR002110 | GO:0005515(InterPro) | |
Cre04g2018 | 691 | ProSiteProfiles | Ankyrin repeat region circular profile. | 304 | 336 | - | - | |
Cre04g2018 | 691 | SMART | ANK_2a | 337 | 366 | IPR002110 | GO:0005515(InterPro) | |
Cre04g2018 | 691 | SMART | ANK_2a | 304 | 333 | IPR002110 | GO:0005515(InterPro) | |
Cre04g2018 | 691 | SMART | ANK_2a | 271 | 300 | IPR002110 | GO:0005515(InterPro) | |
Cre04g2018 | 691 | SUPERFAMILY | Ankyrin repeat | 252 | 365 | IPR036770 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre04g2018 | Cre-Chr4:37481255 | Cre09g1453 | Cre-Chr9:27746350 | 3.40E-81 | dispersed | |
Cre02g2139 | Cre-Chr2:34964650 | Cre04g2018 | Cre-Chr4:37481255 | 5.60E-131 | wgd | |
Cre03g0991 | Cre-Chr3:8722559 | Cre04g2018 | Cre-Chr4:37481255 | 2.40E-147 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
64095 | PF07714 | PK_Tyr_Ser-Thr | 3.50E-53 | CL0016 | Cre | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre04g2018 | - | - | - | 0.0 |