Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g2018 ATGGCGAACCCAGAATCCGCCCCTATCCAACCCTCTGAAGGGGAAAAGAACGTGTATTCTGTGTGGGCTCTTCCTCCGGAAGATGTGACGGCCAGAATCAAGAACCTCATGAACAGCCTCATATCCGAGTTCGGCGGTCCCCAATTCGAGCCACATATCACCGTTGTTGGGGCAATCCGTCTCACCCCTGACGATGCCCTCAACAAATTCCGCTCCGCTTGCCAGGGGCTCAAGGCTTATCAAGCCACCGTCGATCATGTATCTACCGGAACCTTCTTCTACCAGTGTGTTTTTCTCCTTATTCATCCTACCACTGAGGTGGTGGAGACTAGTTCACATTGCTGTGCACATTTTGGTTACAAAAACTCTACCCCTTACATGCCGCATATGAGCCTACTGTATGCCAACATATCAGATGAAAAAAAGAAGCAAGCAAAAGATATAGCAGACAAGCTTGATGAAGCCGTGAATGGCCTGAAGTTCCCAATCACTCGACTTGCACTGTACAAAACAGACACCGAGGATCAAACTCTGAAGTCCTGGGAGAAAATTGCAGAACACGATCTTCCTTCAAGGAGGAAAAACCAAGCTTCATTGCTGAAGGAAGATTACAGAAATTACTGCATGCTCTTCCATTTGGTGAAAAGATCGCAAATGCTGAGATACCCTTTACAGCATCAGAAGCCTACAAAAACAGTCATGGATAGTCCAGTGAGGTTTAAGTTGGGGAAACAGTCGTCCCTGGCGCCGGATGGGCATCTCGAAGATTTGGAGGAGCTAGTCAAGCAGGACCAAACTGAGGAGGGGATAGATTCGAGGGTGAGGTTGATGTACTTGGCCAATGAAGGTGATTTGGAAGGGATTAATGAACTGTTGGATTCGGGAGTCGATGTCAATTTCCATGATATCGACAACCGGACGGCTCTGCATATTGCTGCTTGCCAGGGATTCGCCGACGTTGTCGCTTTGTTGCTCGGACGTGGCGCTGAAGTTGACTCCAAAGATCGCTGGGGGAGCACGCCTCTTAGGGATGCTGTACATTACAAAAACCACGATGTGATCAAACTTCTGGAGAAGCATGGTGCAAAGCCTCCGGTGGCCCCCATGCTCGTCAAGAATGCCCGTGAAGTTCCAGATTATGAAATTGATCCTAAGGAACTTGATTTTACTAACAGCGTGAACATTACCAAGGGAACATTCCGCAAAGCATCTTGGCGTGGAACTGAGGTTGCTGTGAAAGAGCTTGGAGAAGATCTATTCACTGATGAGGATAAAGTGAGGGCTTTCAGAGATGAGCTTGCATTGCTTCAGAAAATACGACACCCCAATGTTGTCCAGTTTCTTGGTGCCGTTACTCAAAGTTGGCCGATGATGATCGTTACAGAATATTTACCAAAGGGAGATCTAGGAGCATTATTGAGTAGAAAAAGAGAAATAAAAATAATGACGGTTGTGAGACTTGCCCTTGATATTGCAAGGGGGATGAATTATTTGCATGAGAACAAGCCAACACCAATTATTCATCGTAATCTTGAGCCTTCAAATATTCTGAGGGATGATTCTGGCCATCTGAAAGTAGCAAATTTTGGAGTTAGCAAGTTATTGAAAGTTAAAGAAGATACACCTTCGACTCATTCAGAGACTTCACGAAGATATGAAGCTCCGGAGGTTTTCAAAAATGAAGAATATGACACAAAGGTGGATGTGTTTTCTTTTGCTTTGATTTTACAAGAGATGATTGAAGGCTGTCCTCCATTTCCTGACAAGGCAGATAGTGAAGTTCCTAAATTGTATGCAGCAGGAGAACGTCCCCCATTTAGAGCATCACTTAAACGTTTTGCAAATGGACTAAAAGAGCTAATTGAAGAATGTTGGAATGAGAAGCCAAATAGTAGACCAACTTTTAGGCAGATAATAACCCAGCTGGAATTCATTTACAACAGATTCGGTCATAAGAGGCGCTGGAAGGTCAGGCCATTGAAATGCTTCCAGAATATTGAGGCAATGTTGAAGAGAGATCGTTCCCGTCGGAGCAGTTTCAATCTTTCGTCACATTCTTCTGCCAGCAGTATATGA 2076 44.99 MANPESAPIQPSEGEKNVYSVWALPPEDVTARIKNLMNSLISEFGGPQFEPHITVVGAIRLTPDDALNKFRSACQGLKAYQATVDHVSTGTFFYQCVFLLIHPTTEVVETSSHCCAHFGYKNSTPYMPHMSLLYANISDEKKKQAKDIADKLDEAVNGLKFPITRLALYKTDTEDQTLKSWEKIAEHDLPSRRKNQASLLKEDYRNYCMLFHLVKRSQMLRYPLQHQKPTKTVMDSPVRFKLGKQSSLAPDGHLEDLEELVKQDQTEEGIDSRVRLMYLANEGDLEGINELLDSGVDVNFHDIDNRTALHIAACQGFADVVALLLGRGAEVDSKDRWGSTPLRDAVHYKNHDVIKLLEKHGAKPPVAPMLVKNAREVPDYEIDPKELDFTNSVNITKGTFRKASWRGTEVAVKELGEDLFTDEDKVRAFRDELALLQKIRHPNVVQFLGAVTQSWPMMIVTEYLPKGDLGALLSRKREIKIMTVVRLALDIARGMNYLHENKPTPIIHRNLEPSNILRDDSGHLKVANFGVSKLLKVKEDTPSTHSETSRRYEAPEVFKNEEYDTKVDVFSFALILQEMIEGCPPFPDKADSEVPKLYAAGERPPFRASLKRFANGLKELIEECWNEKPNSRPTFRQIITQLEFIYNRFGHKRRWKVRPLKCFQNIEAMLKRDRSRRSSFNLSSHSSASSI 691
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 37481255 37489653 + CrPI670011_04g020180.1 Cre04g2018 496322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g2018 691 Gene3D Cyclic phosphodiesterase 12 197 - -
Cre04g2018 691 FunFam Cyclic phosphodiesterase 13 192 - -
Cre04g2018 691 FunFam Integrin-linked protein kinase family 253 380 - -
Cre04g2018 691 Gene3D Transferase(Phosphotransferase) domain 1 465 687 - -
Cre04g2018 691 ProSiteProfiles Protein kinase domain profile. 354 645 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre04g2018 691 Gene3D - 244 376 IPR036770 -
Cre04g2018 691 Pfam Protein tyrosine and serine/threonine kinase 394 642 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre04g2018 691 SUPERFAMILY LigT-like 16 189 IPR009097 -
Cre04g2018 691 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 272 643 IPR051681 GO:0004674(PANTHER)
Cre04g2018 691 CDD STKc_MAP3K-like 395 642 - -
Cre04g2018 691 FunFam Integrin-linked protein kinase family 465 658 - -
Cre04g2018 691 Gene3D Phosphorylase Kinase; domain 1 381 464 - -
Cre04g2018 691 Pfam 2'-5' RNA ligase superfamily 48 173 - -
Cre04g2018 691 SUPERFAMILY Protein kinase-like (PK-like) 398 646 IPR011009 -
Cre04g2018 691 Pfam Ankyrin repeats (3 copies) 276 364 IPR002110 GO:0005515(InterPro)
Cre04g2018 691 FunFam serine/threonine-protein kinase STY46-like 382 465 - -
Cre04g2018 691 ProSiteProfiles Ankyrin repeat profile. 304 336 IPR002110 GO:0005515(InterPro)
Cre04g2018 691 ProSiteProfiles Ankyrin repeat region circular profile. 304 336 - -
Cre04g2018 691 SMART ANK_2a 337 366 IPR002110 GO:0005515(InterPro)
Cre04g2018 691 SMART ANK_2a 304 333 IPR002110 GO:0005515(InterPro)
Cre04g2018 691 SMART ANK_2a 271 300 IPR002110 GO:0005515(InterPro)
Cre04g2018 691 SUPERFAMILY Ankyrin repeat 252 365 IPR036770 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g2018 Cre-Chr4:37481255 Cre09g1453 Cre-Chr9:27746350 3.40E-81 dispersed
Cre02g2139 Cre-Chr2:34964650 Cre04g2018 Cre-Chr4:37481255 5.60E-131 wgd
Cre03g0991 Cre-Chr3:8722559 Cre04g2018 Cre-Chr4:37481255 2.40E-147 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64095 PF07714 PK_Tyr_Ser-Thr 3.50E-53 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g2018 - - - 0.0