Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g2020 ATGTCCAAGCCTTATCAGTCACCACTCACAAGAATGATTAGGGGAAAAGGAAAGGGAGATTTCATAAAGACAGCAAACAGCCCTTCTTTTTGTTCTGTTTTAAAAGTTCCTTCTTCAACCAGCTCTTTTCCTCATCAGCCAAAAGAAAATCTTAGATTCTCACCTTCTGATTGTGCTGCTCATTTCACCTGTAAGTTGCAAATAAAGGGGTTCCAGAATCAAGAAGAGAAGATGTCAGACTCACCTCAGAGGAAGATGGGAAGAGGAAAGATTGAGATTAAGAGGATCGAAAATACAACAAATCGTCAAGTCACTTTCTGTAAGAGAAGAAATGGGTTGCTCAAAAAAGCGTATGAACTTTCTGTTCTATGTGATGCTGAAGTTGCTCTCATCGTTTTCTCAAGCCGTGGCCGCCTCTATGAGTATGCTAACAACAGTGTGAAGGCAACAATTGATAGGTACAAGAAGGCATCCTCAGATTCCACCAACACTGGATCTACTTCTGAAGCTAACACTCAGTTTTACCAACAAGAAGCTGCCAAACTCCGAGTTCAGATTGGTAACTTACAGAACTCAAACAGGAACATGTTGGGCGAGTCTTTAAGTTCTTTGAGTGTAAAAGATCTGAGAAGCCTGGAGAGCAAACTTGAGAAAGGAATTAGCAGAATTAGGTCCAAAAAGAATGAACTCCTCTTTGCTGAAATTGAGTATATGCGAAAAAGGGAAATTGATTTGCACAACAACAATCAGCTGCTTCGAGCAAAGATAGCTGAGAGTGAAAGAAATGTGAACATGATGGGAGGAGAATTTGAGCTGATGCAATCTCATCCGTACGATCCAAGAGACTTCTTCCAAGTGAACGGCTTACAACATAATCATCAATATCCACGCCAAGACAACATGGCTCTTCACACTCTGATTGGTGGATTGGATTATATTATAAGGAGTGCTGGCCATTTGCCGATTGAAAGTTCTTTGTATATATCTCTTTTGATTAAATGCATATTTCTATTGGCATCGAAGTATGATGAGGATGTTGATGAGATGTCCTGCTGCACCCCTAATCTTTATTTCCTCTAG 1080 40.28 MSKPYQSPLTRMIRGKGKGDFIKTANSPSFCSVLKVPSSTSSFPHQPKENLRFSPSDCAAHFTCKLQIKGFQNQEEKMSDSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKATIDRYKKASSDSTNTGSTSEANTQFYQQEAAKLRVQIGNLQNSNRNMLGESLSSLSVKDLRSLESKLEKGISRIRSKKNELLFAEIEYMRKREIDLHNNNQLLRAKIAESERNVNMMGGEFELMQSHPYDPRDFFQVNGLQHNHQYPRQDNMALHTLIGGLDYIIRSAGHLPIESSLYISLLIKCIFLLASKYDEDVDEMSCCTPNLYFL 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 37497982 37505270 + CrPI670011_04g020200.1 Cre04g2020 496324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g2020 359 FunFam agamous-like MADS-box protein AGL11 98 181 - -
Cre04g2020 359 SUPERFAMILY SRF-like 87 163 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre04g2020 359 ProSiteProfiles K-box domain profile. 172 262 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cre04g2020 359 PANTHER SERUM RESPONSE FACTOR HOMOLOG 86 280 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cre04g2020 359 Pfam K-box region 168 256 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cre04g2020 359 Gene3D - 98 179 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre04g2020 359 CDD MADS_MEF2_like 87 161 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cre04g2020 359 ProSiteProfiles MADS-box domain profile. 86 146 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre04g2020 359 PRINTS MADS domain signature 88 108 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre04g2020 359 PRINTS MADS domain signature 123 144 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre04g2020 359 PRINTS MADS domain signature 108 123 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre04g2020 359 Coils Coil 209 229 - -
Cre04g2020 359 SMART madsneu2 86 145 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre04g2020 359 ProSitePatterns MADS-box domain signature. 88 142 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre04g2020 359 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 95 142 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1442 Cre-Chr4:33243334 Cre04g2020 Cre-Chr4:37497982 9.70E-36 dispersed
Cre04g2020 Cre-Chr4:37497982 Cre08g0046 Cre-Chr8:1162935 1.70E-71 dispersed
Cre04g0461 Cre-Chr4:17708323 Cre04g2020 Cre-Chr4:37497982 7.30E-31 transposed
Cre02g2141 Cre-Chr2:34994301 Cre04g2020 Cre-Chr4:37497982 7.70E-70 wgd
Cre03g0993 Cre-Chr3:8745829 Cre04g2020 Cre-Chr4:37497982 1.50E-79 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53550 PF01486 K-box 5.90E-28 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g2020 K09264 - csv:101221430 450.669