Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre04g2020 | ATGTCCAAGCCTTATCAGTCACCACTCACAAGAATGATTAGGGGAAAAGGAAAGGGAGATTTCATAAAGACAGCAAACAGCCCTTCTTTTTGTTCTGTTTTAAAAGTTCCTTCTTCAACCAGCTCTTTTCCTCATCAGCCAAAAGAAAATCTTAGATTCTCACCTTCTGATTGTGCTGCTCATTTCACCTGTAAGTTGCAAATAAAGGGGTTCCAGAATCAAGAAGAGAAGATGTCAGACTCACCTCAGAGGAAGATGGGAAGAGGAAAGATTGAGATTAAGAGGATCGAAAATACAACAAATCGTCAAGTCACTTTCTGTAAGAGAAGAAATGGGTTGCTCAAAAAAGCGTATGAACTTTCTGTTCTATGTGATGCTGAAGTTGCTCTCATCGTTTTCTCAAGCCGTGGCCGCCTCTATGAGTATGCTAACAACAGTGTGAAGGCAACAATTGATAGGTACAAGAAGGCATCCTCAGATTCCACCAACACTGGATCTACTTCTGAAGCTAACACTCAGTTTTACCAACAAGAAGCTGCCAAACTCCGAGTTCAGATTGGTAACTTACAGAACTCAAACAGGAACATGTTGGGCGAGTCTTTAAGTTCTTTGAGTGTAAAAGATCTGAGAAGCCTGGAGAGCAAACTTGAGAAAGGAATTAGCAGAATTAGGTCCAAAAAGAATGAACTCCTCTTTGCTGAAATTGAGTATATGCGAAAAAGGGAAATTGATTTGCACAACAACAATCAGCTGCTTCGAGCAAAGATAGCTGAGAGTGAAAGAAATGTGAACATGATGGGAGGAGAATTTGAGCTGATGCAATCTCATCCGTACGATCCAAGAGACTTCTTCCAAGTGAACGGCTTACAACATAATCATCAATATCCACGCCAAGACAACATGGCTCTTCACACTCTGATTGGTGGATTGGATTATATTATAAGGAGTGCTGGCCATTTGCCGATTGAAAGTTCTTTGTATATATCTCTTTTGATTAAATGCATATTTCTATTGGCATCGAAGTATGATGAGGATGTTGATGAGATGTCCTGCTGCACCCCTAATCTTTATTTCCTCTAG | 1080 | 40.28 | MSKPYQSPLTRMIRGKGKGDFIKTANSPSFCSVLKVPSSTSSFPHQPKENLRFSPSDCAAHFTCKLQIKGFQNQEEKMSDSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKATIDRYKKASSDSTNTGSTSEANTQFYQQEAAKLRVQIGNLQNSNRNMLGESLSSLSVKDLRSLESKLEKGISRIRSKKNELLFAEIEYMRKREIDLHNNNQLLRAKIAESERNVNMMGGEFELMQSHPYDPRDFFQVNGLQHNHQYPRQDNMALHTLIGGLDYIIRSAGHLPIESSLYISLLIKCIFLLASKYDEDVDEMSCCTPNLYFL | 359 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 37497982 | 37505270 | + | CrPI670011_04g020200.1 | Cre04g2020 | 496324 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre04g2020 | 359 | FunFam | agamous-like MADS-box protein AGL11 | 98 | 181 | - | - | |
Cre04g2020 | 359 | SUPERFAMILY | SRF-like | 87 | 163 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cre04g2020 | 359 | ProSiteProfiles | K-box domain profile. | 172 | 262 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Cre04g2020 | 359 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 86 | 280 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Cre04g2020 | 359 | Pfam | K-box region | 168 | 256 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Cre04g2020 | 359 | Gene3D | - | 98 | 179 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cre04g2020 | 359 | CDD | MADS_MEF2_like | 87 | 161 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) | |
Cre04g2020 | 359 | ProSiteProfiles | MADS-box domain profile. | 86 | 146 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cre04g2020 | 359 | PRINTS | MADS domain signature | 88 | 108 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cre04g2020 | 359 | PRINTS | MADS domain signature | 123 | 144 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cre04g2020 | 359 | PRINTS | MADS domain signature | 108 | 123 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cre04g2020 | 359 | Coils | Coil | 209 | 229 | - | - | |
Cre04g2020 | 359 | SMART | madsneu2 | 86 | 145 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cre04g2020 | 359 | ProSitePatterns | MADS-box domain signature. | 88 | 142 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cre04g2020 | 359 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 95 | 142 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre04g1442 | Cre-Chr4:33243334 | Cre04g2020 | Cre-Chr4:37497982 | 9.70E-36 | dispersed | |
Cre04g2020 | Cre-Chr4:37497982 | Cre08g0046 | Cre-Chr8:1162935 | 1.70E-71 | dispersed | |
Cre04g0461 | Cre-Chr4:17708323 | Cre04g2020 | Cre-Chr4:37497982 | 7.30E-31 | transposed | |
Cre02g2141 | Cre-Chr2:34994301 | Cre04g2020 | Cre-Chr4:37497982 | 7.70E-70 | wgd | |
Cre03g0993 | Cre-Chr3:8745829 | Cre04g2020 | Cre-Chr4:37497982 | 1.50E-79 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
53550 | PF01486 | K-box | 5.90E-28 | No_clan | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre04g2020 | K09264 | - | csv:101221430 | 450.669 |