Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g2044 ATGACCCCCACGGAGCTCAAAGACCGCTTGATCTTTGGTCCTTCGTCGTCCCCACAAGACGCTTCTCCTATATTCGATGCTTTAACGCTAACTCTTTCCTCTTCCAGACCCTCTGCTTCATCTTCTCTTCAGGACCCGTCTACGCCTTTGGACCCAAAATCACAATCGCAGTCTCAACAGGCGTGGCTCGTGGATTCCAATTACACATGGCCCAAAAGCAACCTCCACCGCTCCAAAACCGCGCCTGCCATGGCGGTCATCAACGATGTCAATCATTCGCAGGAGCCCAAGCCACAATTTGGTAAACAATCTATCATCCGCCAAGCTGTTGTTCTTCTAATTATCTACTTATCATTGGGCGTGGTTATCTATTGGATTAATCGTGATAAGTTTACGGCTCACGAGACTCATCCTGTGGTCGATGCATTGTACTTTTGCATTGTAACGATGTGTACTATTGGGTATGGAGATATTACCCCCAATAGTGCGGCGACGAAGCTGTTCTCAGTGTTGTTTGTGTTGGTGGGATTTGGGTTTATTGATATATTGCTCTCTGGAATGGTCAGTTATGTGCTTGATTTGCAGGAGAGTTATTTGTTGAGGAATGTAAAGAGGGGGGTGCAGCGTCAATCTGGGAAATCTTATATAATTGATGTGAAGAAGGGAAGAATGAGGATTAGAATGAAAGTGGCATTGGCCCTTGGTGTTGTGATACTTTGTATAGGAGTTGGCATGGGTGTTATGCATTTTGTTGAGAATCTGGGGTGGTTGGATTCATTTTATCTTTCAGTTATGTCTGTCACGACAGTTGGATATGGTGATCAGGCATTCAAGTCAATGACTGGTCGTATTTTTGCTTCTATCTGGTTGCTTGTATCAACCCTTGCTGTAGCTCGGGCGTTCCTTTATTTAGCAGAGGCAAGAGTAGATAAGCGGCACAGGATGATGGCAAAATGGATACTTGGTCAGGATATGACTGTTTCTGAGTTTCTTGCTGCTGATATTGACAACAATGGTTTTGTGAGTAGGTCAGAATATGTGATATACAAGCTGAAGGAGATGGGTAAGGTGTCAGAGAAAGATGTCATGCAGATATCTAATAACTTTGATAGGCTAGACACTGGCAAATGTGGGAAGATTACACTGGCTGATCTCTTGGAAAGTCATCACTGA 1173 44.25 MTPTELKDRLIFGPSSSPQDASPIFDALTLTLSSSRPSASSSLQDPSTPLDPKSQSQSQQAWLVDSNYTWPKSNLHRSKTAPAMAVINDVNHSQEPKPQFGKQSIIRQAVVLLIIYLSLGVVIYWINRDKFTAHETHPVVDALYFCIVTMCTIGYGDITPNSAATKLFSVLFVLVGFGFIDILLSGMVSYVLDLQESYLLRNVKRGVQRQSGKSYIIDVKKGRMRIRMKVALALGVVILCIGVGMGVMHFVENLGWLDSFYLSVMSVTTVGYGDQAFKSMTGRIFASIWLLVSTLAVARAFLYLAEARVDKRHRMMAKWILGQDMTVSEFLAADIDNNGFVSRSEYVIYKLKEMGKVSEKDVMQISNNFDRLDTGKCGKITLADLLESHH 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 37677977 37682513 + CrPI670011_04g020440.1 Cre04g2044 496348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g2044 390 MobiDBLite consensus disorder prediction 35 56 - -
Cre04g2044 390 Gene3D - 102 202 - -
Cre04g2044 390 FunFam Two-pore potassium channel 3 213 327 - -
Cre04g2044 390 ProSitePatterns EF-hand calcium-binding domain. 334 346 IPR018247 -
Cre04g2044 390 FunFam Two-pore potassium channel 5 94 204 - -
Cre04g2044 390 Gene3D - 299 390 - -
Cre04g2044 390 Gene3D - 235 298 - -
Cre04g2044 390 SUPERFAMILY Voltage-gated potassium channels 220 326 - -
Cre04g2044 390 MobiDBLite consensus disorder prediction 1 22 - -
Cre04g2044 390 Pfam Ion channel 112 191 IPR013099 -
Cre04g2044 390 Pfam Ion channel 237 306 IPR013099 -
Cre04g2044 390 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 110 337 IPR003280 GO:0005267(InterPro)|GO:0005887(PANTHER)|GO:0009705(PANTHER)|GO:0015271(PANTHER)|GO:0016020(InterPro)|GO:0022841(PANTHER)|GO:0030322(PANTHER)|GO:0071805(InterPro)|GO:0071805(PANTHER)
Cre04g2044 390 SUPERFAMILY EF-hand 328 387 IPR011992 -
Cre04g2044 390 PRINTS Two pore domain K+ channel signature 148 176 IPR003280 GO:0005267(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
Cre04g2044 390 PRINTS Two pore domain K+ channel signature 268 277 IPR003280 GO:0005267(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
Cre04g2044 390 SUPERFAMILY Voltage-gated potassium channels 105 191 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0998 Cre-Chr1:15809174 Cre04g2044 Cre-Chr4:37677977 1.00E-46 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g2044 K05389 - csv:101220017 726.472