Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g2045 ATGTCAGATGAAATGTTTAAAGATCTTTTTTATGGCGGGATGGATGAGTACGAGTCTCTAGTGAGAGCTTTTGGGGAATCATCGGATTATTCGAATAATAATAATGAAATTTCGGGGACTCCCATAAATTCTTGTGGATCTTTGTCGTCTTCGGATGCTGGAGCTGAGGAGGATGATTCTGTGAAAGAGAAGGATAAGCAGATCGACAAAGAACATGTTGAAGATGGAGGAGAGAGTTCTAAGGCTGGATCAGGTAAATCAAAGAAGAAAGGAGAGAAGAAAGAGAGAGAAGCAAGAGTTGCTTTCATGACGAAGAGCGAGGTTGATCATCTTGAGGATGGATATAGATGGAGAAAATATGGACAGAAGGCTGTTAAGAACAGTGCTTATCCTAGGAGCTATTACAGATGCACAACTCAAAAATGCGGAGTAAAAAAACGAGTAGAGAGATCCTTTGAAGATCCATCCATTGTAATTACAACCTACGAAGGTCAACACAACCACCCAGTCCCGACAACGCTAAGAGGAAACCTATCGGCGGCGAGCAGCGCGTTCTCACCATCCATGCTAGCACCAATGCCAGTGGTCGGTGGCATTGGGTTTCTACCTACAGAGTTGTTGAGTAATTCTTCCAGCAACAATAACCAGGCCATCAATGGTGGCGCATCCGTTTATTCACATAACAACTTTGACTACACTTATAGTGAGCGACAATCAGAATATGGGCTTTTGCAGGATATTTTTCCAACTCCTTCATCGTTCTTCAACCGGCAATTGTGA 780 42.95 MSDEMFKDLFYGGMDEYESLVRAFGESSDYSNNNNEISGTPINSCGSLSSSDAGAEEDDSVKEKDKQIDKEHVEDGGESSKAGSGKSKKKGEKKEREARVAFMTKSEVDHLEDGYRWRKYGQKAVKNSAYPRSYYRCTTQKCGVKKRVERSFEDPSIVITTYEGQHNHPVPTTLRGNLSAASSAFSPSMLAPMPVVGGIGFLPTELLSNSSSNNNQAINGGASVYSHNNFDYTYSERQSEYGLLQDIFPTPSSFFNRQL 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 37696344 37697930 + CrPI670011_04g020450.1 Cre04g2045 496349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g2045 259 FunFam WRKY transcription factor 57 97 171 - -
Cre04g2045 259 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 55 209 IPR044810 GO:0003700(InterPro)
Cre04g2045 259 SMART WRKY_cls 111 170 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre04g2045 259 MobiDBLite consensus disorder prediction 27 98 - -
Cre04g2045 259 Gene3D WRKY domain 95 172 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre04g2045 259 ProSiteProfiles WRKY domain profile. 106 171 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre04g2045 259 SUPERFAMILY WRKY DNA-binding domain 103 171 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre04g2045 259 MobiDBLite consensus disorder prediction 27 54 - -
Cre04g2045 259 Pfam WRKY DNA -binding domain 112 169 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre04g2045 259 MobiDBLite consensus disorder prediction 55 98 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0235 Cre-Chr1:1736481 Cre04g2045 Cre-Chr4:37696344 5.50E-41 dispersed
Cre04g2045 Cre-Chr4:37696344 Cre06g1206 Cre-Chr6:5917369 3.90E-38 dispersed
Cre10g1308 Cre-Chr10:26373199 Cre04g2045 Cre-Chr4:37696344 4.20E-14 dispersed
Cre11g1198 Cre-Chr11:9855583 Cre04g2045 Cre-Chr4:37696344 4.30E-21 transposed
Cre02g2148 Cre-Chr2:35073683 Cre04g2045 Cre-Chr4:37696344 7.40E-36 wgd
Cre04g2045 Cre-Chr4:37696344 Cre09g0909 Cre-Chr9:9133848 1.30E-11 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53551 PF03106 WRKY 8.00E-26 CL0274 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g2045 - - - 0.0