Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g2048 ATGGCTGCTTCTACAATGGCTCTCTCCTCCCCATCTCTGGCCGGCAAGGCCGTGAAGCTCTCCCCCAACACCCCTGAAATTCAGGGCAATGGAAGAGTCAGCATGAGGAAAACTGTCACCAAGCAAGTTTCCTCCGGCAGCCCATGGTACGGCCCCGACCGTGTCAAGTACTTGGGCCCATTCTCCGGTGAGCCACCGTCCTACTTGACCGGAGAGTTCCCTGGTGACTACGGCTGGGACACTGCTGGACTTTCAGCCGATCCCGAGACCTTCGCCAAGAACCGTGAGCTCGAAGTGATCCACTCCAGATGGGCCATGCTTGGAGCTTTGGGCTGTGTCTTCCCTGAGCTTCTATCTCGCAATGGCGTGAAGTTTGGTGAAGCTGTGTGGTTCAAAGCTGGATCTCAAATCTTCAGCGAGGGAGGCCTCGACTACTTGGGGAATCCCAGCTTGATCCACGCACAGAGCATTTTGGCCATCTGGGCCACTCAGGTTGTGTTGATGGGCGCCGTCGAGGGCTACCGTATTGCCGGTGGCCCGCTCGGGGAGGTGACTGACCCCATCTACCCAGGTGGAAGCTTCGACCCATTGGGTCTGGCTGATGACCCAGAGGCCTTCGCTGAATTGAAGGTTAAGGAGCTCAAGAATGGAAGGTTGGCCATGTTCTCCATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGTCCATTGGAGAATTTGGCTGACCACCTTGCTGATCCAGTCAACAACAATGCCTGGGCCTATGCGACAAACTTTGTTCCCGGAAAGTGA 798 55.39 MAASTMALSSPSLAGKAVKLSPNTPEIQGNGRVSMRKTVTKQVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 37721756 37722553 - CrPI670011_04g020480.1 Cre04g2048 496352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g2048 265 FunFam Chlorophyll a-b binding protein, chloroplastic 56 258 - -
Cre04g2048 265 Gene3D Chlorophyll a/b binding protein domain 56 258 - -
Cre04g2048 265 SUPERFAMILY Chlorophyll a-b binding protein 48 262 - -
Cre04g2048 265 Pfam Chlorophyll A-B binding protein 65 232 IPR022796 -
Cre04g2048 265 MobiDBLite consensus disorder prediction 1 30 - -
Cre04g2048 265 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 4 265 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g1028 Cre-Chr3:9165761 Cre04g2048 Cre-Chr4:37721756 1.00E-13 dispersed
Cre04g2048 Cre-Chr4:37721756 Cre08g0169 Cre-Chr8:3848296 4.70E-55 dispersed
Cre04g2048 Cre-Chr4:37721756 Cre04g2049 Cre-Chr4:37724473 8.30E-153 tandem
Cre02g0613 Cre-Chr2:3104139 Cre04g2048 Cre-Chr4:37721756 1.10E-120 transposed
Cre04g0814 Cre-Chr4:26817728 Cre04g2048 Cre-Chr4:37721756 3.80E-26 transposed
Cre10g0841 Cre-Chr10:9175870 Cre04g2048 Cre-Chr4:37721756 1.10E-96 transposed
Cre10g1333 Cre-Chr10:26855449 Cre04g2048 Cre-Chr4:37721756 2.10E-135 transposed
Cre02g2152 Cre-Chr2:35092041 Cre04g2048 Cre-Chr4:37721756 1.10E-144 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g2048 K08912 - csv:101221671 524.628