Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g2049 ATGGCTGCCTCTACAATGGCTCTCTCCTCCCCATCTCTGGCCGGCAAGGCCGTGAAGCTCTCCCCCAACGCCCCTGAAATTCAGGGCAATGGAAGAGTCAGCATGAGGAAGACGGCCAGCAAGCAAGTTTCCTCCGGCAGCCCATGGTACGGCCCCGACCGTGTCAAGTACTTGGGCCCATTCTCCGGCGAGCCACCGTCCTACTTGACCGGAGAGTTCCCCGGTGACTACGGCTGGGACACTGCTGGACTTTCAGCCGATCCCGAGACCTTCGCCAAGAACCGTGAGCTCGAAGTGATCCACTCCAGATGGGCCATGCTTGGAGCTTTGGGCTGTGTCTTCCCTGAGCTTTTGTCCCGCAATGGTGTGAAGTTTGGTGAGGCTGTGTGGTTCAAGGCTGGATCTCAGATCTTCAGCGAGGGAGGGCTTGACTACTTGGGAAACCCCAGCTTGATCCACGCACAGAGCATTTTGGCCATCTGGGCCACTCAGGTTGTGTTGATGGGCGCCGTCGAGGGCTACCGTATTGCCGGCGGCCCGCTCGGGGAGGTGACTGACCCCATCTACCCAGGTGGAAGCTTCGACCCATTGGGTCTGGCTGATGACCCAGAGGCCTTCGCTGAATTGAAGGTTAAGGAGCTCAAGAATGGAAGGTTGGCCATGTTCTCCATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAAGGTCCATTGGAGAATTTGGCTGACCACCTTTCTGACCCAGTCAACAACAATGCTTGGGCCTATGCCACAAACTTTGTTCCCGGAAAGTGA 798 56.39 MAASTMALSSPSLAGKAVKLSPNAPEIQGNGRVSMRKTASKQVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNNAWAYATNFVPGK 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 37724473 37725270 + CrPI670011_04g020490.1 Cre04g2049 496353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g2049 265 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 4 265 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
Cre04g2049 265 Gene3D Chlorophyll a/b binding protein domain 56 258 - -
Cre04g2049 265 FunFam Chlorophyll a-b binding protein, chloroplastic 56 258 - -
Cre04g2049 265 Pfam Chlorophyll A-B binding protein 65 232 IPR022796 -
Cre04g2049 265 MobiDBLite consensus disorder prediction 19 46 - -
Cre04g2049 265 SUPERFAMILY Chlorophyll a-b binding protein 48 262 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g1026 Cre-Chr3:9159931 Cre04g2049 Cre-Chr4:37724473 1.80E-147 dispersed
Cre04g2049 Cre-Chr4:37724473 Cre10g1333 Cre-Chr10:26855449 5.40E-136 dispersed
Cre04g2048 Cre-Chr4:37721756 Cre04g2049 Cre-Chr4:37724473 8.30E-153 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g2049 K08912 - csv:101221671 527.709