Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g2050 ATGGCTTCTAGCGTCAGTTTAGCCATTTTCATGATAGCTAGTTTTGTTCTAGTAAGGGTTCTGTCTACCCAACACCAATCCGCCATGGAAGTTGAATTGGAAGCCTTAAAGGCCTTCAAGAGTTGCATCCAGTTCGATCCATTGGGAGCACTTGCAGATTGGACAGACCTTAATCCCCACTGCAATTGGTCTGGCATTATATGTGACCCTGATTCCAAAAGGGTAATTTCGATTACTTTGATTGATCAGCAGCTTGAAGGCGAGATTTCTCCATTTATTGGGAACCTCTCAGCTCTCCAGGTTCTTGATTTAACTCAGAATTCGTTTACCGGGCAGATTCCAGGTGAATTGGGTTCGTGTTCCAACCTTTCTCAGCTCACTCTTTACAGAAACTTTCTTTCAGGTCACATTCCACTCCAGTTGGGAAACCTTGGGTTCCTGCAAGATGTTGATTTGGGAAATAACTTCTTAAAGGGAAGCATTCCTGATAGCATTTGCAATTGCACAAACTTGTTAGCATTTGGTGTAATATTTAATAATCTCACGGGAAGAATCCCATCAAACATAGGAAACTTAGTCGATCTTCAAATTCTGGTTGCATACGCCAACAAGCTTGAAGGTTCCATTCCCATCTCTATTGGCAAACTAGGTGCACTGCAAACTCTAGATCTTAGCCAGAACAACTTGTCGGGGAATATACCAATGGAGACTGGGAATTTGTTGAATTTGGAGTATATTTCATTGTTTGAGAATGCTTTGGCTGGGAAAATTCCTGAGGAGATAGGTAAATGTGAGAAGCTTCTTTCTTTGGAACTATACAACAATAAGTTCAGTGGTCCAATTCCTTCACAATTAGGCTCTCTGATTCACTTACAAACCTTGCGTCTGTATACAAATAGATTAAATTCCACTATACCACAATCTCTCTTACAGTTGAAAGGTTTAACCCATTTGCTTCTCTCAGAGAACGAGTTAAGTGGAACTGTATCTTCTGATATTGGATCTTTGAGATCATTGCAGGTTTTGACTCTTCACTCGAATAGATTTTTCGGGGTGATTCCTTTGTCTTTGACAAACTTGTCAAACCTCACACATTTGTCTCTGAGCTTCAATTTTTTCACTGGTGAGATTCCGTCCAATTTAGGTCTGCTTTATAATCTGAAGAGATTGACATTGAGCAGCAATCTCCTAGCAGGTTCAATTCCATCTAGTATTATCAATTGCACCCAGCTTTCTATAATTGATCTTTCATTCAATAGGCTGACAGGAAAAATACCTATGGGATACGGGAAGTTGCAGAATCTTACTTCCCTCTTGCTTGGATCAAATAGAATTTTTGGTGAAATCCCAGATGACTTATTTAATTGCTCATCCCTTGAGGTTGTAGACCTGGCTCTAAACAATTTCACTGGATTATTAAAATCCAGTATCGGCAAGCTTTCCAATATTCGAGTTTTCAGAGCCGCATCAAATTCATTTTCTGGGGAAATTCCAGGTGACATTGGCAACTTAAGCAGGCTCAACACTTTAGTACTTGCAGAAAATAAATTTTCAGGTCAAATTCCTGGGGAGTTGTCTAAGCTTTCTCTTCTTCAAGCTCTTTCTTTGCATGACAATGCATTGGAAGGAAGGATTCCTGAAAAAATATTTGATCTAAAACAACTGGTTCATCTTCATCTGCAGAACAACAAGTTCATAGGTCCAATTCCAGATGCCATCTCAAGACTAGAGTTTCTTTCGTATTTGGACCTTCATGGAAACATGCTTAATGGATCAGTTCCTAAAAGTATGAGGAATCTTCATCGACTTGTGATGTTAGATCTGTCCCGCAACCATCTATCTGGATCATTTCCTGGGGTTTTAATCTCAGGTATGAAAGATATGCAACTGTACATGAACTTGTCATACAATTTCCTGGTAGGAGCTATTCCAGCTGAGCTTGGGTTGTTGCAAATGATACAATCCATTGACTTCTCAAACAACAATCTCACTGGGATTATTCCAGCCACGATCGGAGGTTGTAGAAATTTGTTCTTTCTTGATCTGTCAGGAAATCATCTTTCCGGTATGCTTCCAGGTAAAGCTTTTACCGGAATGAATATGCTCATGAGCATGAACCTTTCAAGGAACAAAATAGCTGGTGAAATCCCAGAAGAGTTAGCAAATCTGGAGCACTTGTACTATTTGGACCTTTCTCAGAACCAGTTCAATGGCAGAATCCCTCAAAAACTTTCAACTCTGAAGTATGTTAACCTTTCCTTTAATCAACTAGAAGGTCCTGTTCCAGACACCGGAATATTTCAAAAGATAAATGCTTCAAGCTTGATTGGAAATCCTGCTCTTTGTGGATCCAAGTCCTTCGCTCCTTGTGGAAAGAAGTATTTGCGACATCTATCAAAAAAGACCTTACTAATTCTCATAACCCTTGGATCTATTATTGTAGTCTTAGCTATAATTTTCTTAATTCTAGGCCTCAACCGATATCGTAAGCTTGAGAAATCTAAAATTATTGAAAATCCTGAACCATCATTGGATTATGCATGTACCCTTAAGAGGTTTGATAAGAAGTATATGGAGATTGCAACAGAATACTTCAGCGATGAAAACATTCTAGGTTCCAGTACTTTAAGCACTGTCTACCGGGGTCAACTAGACAACGGACAGATTGTAGCTGTAAAAAGATTGAATTTGCAATATTTCTCTGCCGAATCAGATGATTACTTCAGTAGAGAAATCAAGATTCTTTGTCAACTTAGACATAGGAATTTGGTGAAAGTACTCGGATATGCTTGGGAAAGCCAGAAGCTGAAGGCTATCGTGCTTGAATACATGGAAAATGGGAACTTGGATAGAATAATACATAACCCTGGAACAGATCAAATGAGTTGTTCATTGTCAAAGAGGGTTGATATTTGTGTTTCTGTTGCTAGTGGGATGCAATACCTGCATCATGGATATGATTTTCCCATCATTCACTGCGACTTGAAACCTTCAAACATCCTTCTTGATGGAGACTGGGTAGCCCATGTGAGTGATTTTGGAACTGCTAGAGTGTTAGGGGTGCAAAGCCAAGACACAAGCAGCATTTCCTCTTCAGCAGCTTTTGAAGGCAGTATCGGATATTTGGCTCCAGAGTTTGCATACATGGGGAAAGTGACAACAAAAGTAGATGTGTTCAGTTTTGGTGTAATACTGATGGAATTTCTGACAAAGAAGAGGCCAACTGCCACCATTGAAGCTCATGGACTCCCAATCAGCTTGCAGCAACTGGTAGAGAGAGCTCTAGCAAATGGAAAGGAAGAACTTAGTCAAGTTTTGGATCCTGTGCTGTTCTTGAATGATTCAAAGGAGCAAGGGAGGTTAGAAGAACTGCTCAAATTAGCACTAAGCTGTACCGCCCAAAATCCTGATAATAGACCTGACATGAATGAAATTCTGCCTATCCTTCTGAAGTTGCGCAGAGATGAATGGTAG 3474 39.87 MASSVSLAIFMIASFVLVRVLSTQHQSAMEVELEALKAFKSCIQFDPLGALADWTDLNPHCNWSGIICDPDSKRVISITLIDQQLEGEISPFIGNLSALQVLDLTQNSFTGQIPGELGSCSNLSQLTLYRNFLSGHIPLQLGNLGFLQDVDLGNNFLKGSIPDSICNCTNLLAFGVIFNNLTGRIPSNIGNLVDLQILVAYANKLEGSIPISIGKLGALQTLDLSQNNLSGNIPMETGNLLNLEYISLFENALAGKIPEEIGKCEKLLSLELYNNKFSGPIPSQLGSLIHLQTLRLYTNRLNSTIPQSLLQLKGLTHLLLSENELSGTVSSDIGSLRSLQVLTLHSNRFFGVIPLSLTNLSNLTHLSLSFNFFTGEIPSNLGLLYNLKRLTLSSNLLAGSIPSSIINCTQLSIIDLSFNRLTGKIPMGYGKLQNLTSLLLGSNRIFGEIPDDLFNCSSLEVVDLALNNFTGLLKSSIGKLSNIRVFRAASNSFSGEIPGDIGNLSRLNTLVLAENKFSGQIPGELSKLSLLQALSLHDNALEGRIPEKIFDLKQLVHLHLQNNKFIGPIPDAISRLEFLSYLDLHGNMLNGSVPKSMRNLHRLVMLDLSRNHLSGSFPGVLISGMKDMQLYMNLSYNFLVGAIPAELGLLQMIQSIDFSNNNLTGIIPATIGGCRNLFFLDLSGNHLSGMLPGKAFTGMNMLMSMNLSRNKIAGEIPEELANLEHLYYLDLSQNQFNGRIPQKLSTLKYVNLSFNQLEGPVPDTGIFQKINASSLIGNPALCGSKSFAPCGKKYLRHLSKKTLLILITLGSIIVVLAIIFLILGLNRYRKLEKSKIIENPEPSLDYACTLKRFDKKYMEIATEYFSDENILGSSTLSTVYRGQLDNGQIVAVKRLNLQYFSAESDDYFSREIKILCQLRHRNLVKVLGYAWESQKLKAIVLEYMENGNLDRIIHNPGTDQMSCSLSKRVDICVSVASGMQYLHHGYDFPIIHCDLKPSNILLDGDWVAHVSDFGTARVLGVQSQDTSSISSSAAFEGSIGYLAPEFAYMGKVTTKVDVFSFGVILMEFLTKKRPTATIEAHGLPISLQQLVERALANGKEELSQVLDPVLFLNDSKEQGRLEELLKLALSCTAQNPDNRPDMNEILPILLKLRRDEW 1157
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 37725676 37729420 - CrPI670011_04g020500.1 Cre04g2050 496354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g2050 1157 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 696 1152 IPR050647 -
Cre04g2050 1157 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 181 429 - -
Cre04g2050 1157 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 944 1156 - -
Cre04g2050 1157 SUPERFAMILY L domain-like 546 789 - -
Cre04g2050 1157 Gene3D Ribonuclease Inhibitor 697 797 IPR032675 -
Cre04g2050 1157 Gene3D Ribonuclease Inhibitor 324 428 IPR032675 -
Cre04g2050 1157 Gene3D Ribonuclease Inhibitor 235 323 IPR032675 -
Cre04g2050 1157 Gene3D Phosphorylase Kinase; domain 1 829 943 - -
Cre04g2050 1157 SUPERFAMILY L domain-like 31 310 - -
Cre04g2050 1157 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 553 619 - -
Cre04g2050 1157 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 29 180 - -
Cre04g2050 1157 Gene3D Ribonuclease Inhibitor 429 522 IPR032675 -
Cre04g2050 1157 Gene3D Ribonuclease Inhibitor 523 629 IPR032675 -
Cre04g2050 1157 ProSiteProfiles Protein kinase domain profile. 865 1157 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre04g2050 1157 Pfam Leucine Rich Repeat 434 456 IPR001611 GO:0005515(InterPro)
Cre04g2050 1157 Pfam Leucine Rich Repeat 338 360 IPR001611 GO:0005515(InterPro)
Cre04g2050 1157 Pfam Leucine Rich Repeat 386 408 IPR001611 GO:0005515(InterPro)
Cre04g2050 1157 Pfam Leucine Rich Repeat 99 120 IPR001611 GO:0005515(InterPro)
Cre04g2050 1157 Pfam Leucine Rich Repeat 267 288 IPR001611 GO:0005515(InterPro)
Cre04g2050 1157 Pfam Leucine Rich Repeat 147 168 IPR001611 GO:0005515(InterPro)
Cre04g2050 1157 Pfam Leucine Rich Repeat 219 240 IPR001611 GO:0005515(InterPro)
Cre04g2050 1157 Pfam Leucine Rich Repeat 362 382 IPR001611 GO:0005515(InterPro)
Cre04g2050 1157 Gene3D Transferase(Phosphotransferase) domain 1 944 1156 - -
Cre04g2050 1157 SUPERFAMILY RNI-like 282 626 - -
Cre04g2050 1157 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 620 794 - -
Cre04g2050 1157 Pfam Leucine rich repeat 691 736 IPR001611 GO:0005515(InterPro)
Cre04g2050 1157 Pfam Leucine rich repeat 632 687 IPR001611 GO:0005515(InterPro)
Cre04g2050 1157 Pfam Leucine rich repeat 554 613 IPR001611 GO:0005515(InterPro)
Cre04g2050 1157 Pfam Protein kinase domain 866 1146 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre04g2050 1157 Gene3D Ribonuclease Inhibitor 144 234 IPR032675 -
Cre04g2050 1157 FunFam Leucine-rich repeat receptor protein kinase EMS1 449 548 - -
Cre04g2050 1157 CDD STKc_IRAK 871 1152 - -
Cre04g2050 1157 ProSitePatterns Serine/Threonine protein kinases active-site signature. 990 1002 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre04g2050 1157 Gene3D Ribonuclease Inhibitor 630 696 IPR032675 -
Cre04g2050 1157 Gene3D Ribonuclease Inhibitor 31 143 IPR032675 -
Cre04g2050 1157 SMART serkin_6 865 1149 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre04g2050 1157 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 825 943 - -
Cre04g2050 1157 Pfam Leucine rich repeat N-terminal domain 32 69 IPR013210 -
Cre04g2050 1157 SMART LRR_typ_2 384 408 IPR003591 -
Cre04g2050 1157 SMART LRR_typ_2 144 168 IPR003591 -
Cre04g2050 1157 SMART LRR_typ_2 650 673 IPR003591 -
Cre04g2050 1157 SMART LRR_typ_2 723 747 IPR003591 -
Cre04g2050 1157 SMART LRR_typ_2 96 120 IPR003591 -
Cre04g2050 1157 SMART LRR_typ_2 528 552 IPR003591 -
Cre04g2050 1157 SMART LRR_typ_2 336 359 IPR003591 -
Cre04g2050 1157 SMART LRR_typ_2 432 456 IPR003591 -
Cre04g2050 1157 SMART LRR_typ_2 600 623 IPR003591 -
Cre04g2050 1157 SMART LRR_typ_2 360 383 IPR003591 -
Cre04g2050 1157 SMART LRR_typ_2 576 599 IPR003591 -
Cre04g2050 1157 SMART LRR_typ_2 216 240 IPR003591 -
Cre04g2050 1157 SMART LRR_typ_2 288 312 IPR003591 -
Cre04g2050 1157 SMART LRR_typ_2 674 698 IPR003591 -
Cre04g2050 1157 SUPERFAMILY Protein kinase-like (PK-like) 846 1149 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1618 Cre-Chr4:34616526 Cre04g2050 Cre-Chr4:37725676 2.50E-09 dispersed
Cre04g2050 Cre-Chr4:37725676 Cre10g2242 Cre-Chr10:36808938 2.00E-57 dispersed
Cre04g2050 Cre-Chr4:37725676 Cre10g2303 Cre-Chr10:37283586 8.90E-50 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64096 PF00069 Pkinase 4.00E-44 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g2050 K13420 - csv:101215973 1964.12