Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g2057 ATGATGGCTGTGAATTTAAACGAAAGAGGTATCAGGGGAATAGTATTTACCCTTGAGACGCTTCGGAAGAATCGTGCCCATAAGCTGAAGGTGATTTTTGGGGCTTTTTCGCTTTTGCCATTGCCCTGCGGCCTGCGCCGTTGTGCTCTCCGTCGGTCTTCAATTGGCAGCGCTCAGCCCGGACTCGGTCTTCCCGAGTCTGGACCGGTTTGGAGTGCCCTTCTGTTTATTTCTTCTGTCGTCCGCTTCTCAATTGACATGTCTCGTGTGGCCAATCAGAAGCTCTTCGGTCTCTCAATTCAAGGTTCTCTCTCACTCGCTGTCTCTCTCCGCCGGTTCGTCGACGAAGGAGCAAAGCAGAGGAAAGTTAGGGACAAGGAAATGGACGTTGGCGAAGAAATTAGGGCAGCTCACAAGCGAGATTTTCTGGAATTCCTTGAACAGGATGTTGGGAAAGGAATTTACATGGACGAGATCAAAGCCATGATTAATCATAAGCGACATCGGCTCATAATCAACATTTCTGATCTTCATTCTTTCAGAGATCTTGGCCCCAGGGTGCTCAGGAATCCCAGTGAGTACATTCAGCCATTCTGTGACGCAGTCACAGAAACTGCTCGCAGTATCGACCCAAAATACCTTAAGGAAGGAGAGCAAGTTTTGGTGGGCTTTGAGGGCCCCTTTGTTTCTCGCCGTGTCACTCCCAGGGAACTTCTCTCTCAGTTTATTGGCTCCATGGTCTGCGTTGAGGGCATTGTTACCAAATGTTCTCTTGTTAGACCAAAAGTTGTCAAAAGTGTCCATTTCTGCCCCACAACTGGAGGTTTTACCAGCCGTGAATACCGTGACATTACATCCAACATGGGCTTGCCCACAGGATCTGTGTATCCCACAAGGGATGACAATGGCAACTTGTTGGTTACTGAGTATGGCCTGTGTAGATATAAAGATCATCAGACCTTATCAATGCAAGAAATGCCTGAGAATTCAGCACCTGGTCAGCTTCCACGAACAGTGGATATCATAGTTGAGGACGACTTAGTTGACTGTTGCAAGCCAGGTGATCGTGTTGCTATTGTAGGAATATATAAAGCTCTTCCAGGAAAAAGCAAGGGCAGCTTGAATGGAGTGTTCAGGACTGTTCTTGTTGCTAACAATGTTTCTCTACTAAACAAGGAGGCTAATGCACCAATATATAGTCCTGAGGACTTGAAGAACATTAAAAAGATAGCGGAAAGAGATGACACATTTGACCTTCTCGGAAATTCTCTTGCACCTTCCATATATGGACATTCATGGATAAAAAAAGCCGTGATACTATTGATGCTTAGTGGAGTGGAGAAGAACTTGAAGAATGGCACCCACTTAAGAGGTGATATCAACATGATGATGGTTGGTGATCCTTCTGTTGCCAAGTCACAACTTTTAAGGGCAATCATGAATATTGCACCCTTAGCAATATCCACAACAGGCCGTGGTTCATCTGGTGTCGGGTTAACTGCTGCTGTTACATCAGATCAGGAAACAGGAGAACGAAGGCTAGAAGCTGGTGCAATGGTTCTTGCTGATCGAGGTGTTGTCTGTATTGATGAGTTTGACAAGATGAATGATCAAGATAGGGTTGCAATACATGAAGTTATGGAGCAGCAGACTGTGACTATTGCCAAAGCTGGCATTCATGCTTCACTGAATGCTCGGTGCAGTGTGGTAGCAGCTGCAAATCCCATATATGGATCTTACGATCGATCGTTGACACCAACAAAGAATATAGGTCTTCCAGACTCTCTACTCTCTCGATTTGATCTACTGTTTATTGTATTGGATCAAATGGATCCCGATATTGATCGTCATATTTCGGAGCATGTGTTGCGTATGCACCGGTATCGTTCAGTACTTGATGGAGGTGAGGCTGGGGGCTCAGTGTATGGAAGAGAGGATGAAGCTGAAGCTGACACTTCTGTCTTTGTCAAGTATAATAGAATGCTTCATGGGAAAAAGATTGAACGTGGTCGGAAGCGTGATACCCTCACCATCAAGTTTCTTAAGAAGTACATTCATTATGCTAAGCATAGGATACAACCCGATCTAACTGATGAGGCATCTGAGCAAATTGCAACAGCATATGCAGAACTTAGAAATTCAACTTCAAATGCGAAGACTGGAGGAACTCTTCCAATTACCGCGAGAACCCTGGAAACCATTATACGACTCTCAACTGCCCATGCGAAATTAAAGTTGAGTAGAAAGGTTTCCAAATCTGATGTCGAGGCTGCCTTGAAAGTTCTTAATTTTGCCATATATCATAAAGAGTTGACTGACATGGAAGAGCGTGAGCAAGAAAGAGAGAAAGAATTGGAAAGAAAACGCAGAGCTGAACATCAAACAGTGGAAAATGATAGACCAGAACGTAGTACCAAAAGAAGAGAGGAGGGCTCAAGGACAGATACCATGGAAATCGATGATCCTCCTTCTGAGCCTGTACTTGATCTGTCTGCAGAAAGAATAGAAGCATTCAATTCTTTGTTTGGTCAGCACATGCGTGCAAACCACCTGGATGTTATATCTATTGCTGACATTGAGAATGTCGTTAATGCTGCAGCAGATACTCATTACACTACCGCTGAAATAATGTTGCTCTTGCAGAGACTGCAAGATGATAACAGGATGGAAGGAAATGAAATTACGGAGGAAGTTGGAGAGAAACAAAGCGAGGAAAATTTAAATGTGAAGAGAAAGATTTTTGTGGCCGGTGCATCCGGAAGTACTGGAAAAAGGATTGTGGAGCAGTTGCTGGCAAGAGGCTTTGCAGTCAAGGCCGGGGTTCGAGACGTAAGCAAGGCTAAATCTACTCTTTCCCCGGGCAATCCTGCTCTTCAAATTGTAAGAGCGGATGTGACTGAAGGCTCTGCAAAGTTGGCAGAAGCCATAGGTTCTGATTCTGAAGCAGTAATTTGTGCTACGGGCTTTCGCCGAGGATGGGATTTATTTGCGCCATGGAAGGTTGACAATTTAGGCACTGTAAACCTAGTTGAAGCATGCCGTGAGCTGGGCATAAACAGATTTATTCTGATCAGTTCCATTTTAGTCAATGGAGCTGCAATGGGACAGATTCTCAACCCAGCTTATATCTTTTTAAATGTCTTGGGACTCACCTTGATTGCAAAGCTTCAAGCAGAGCAGCACATCAGGAAATCCGGTATCAACTACACAATCATAAGGCCTGGAGGTTTGAAAAATGAGCCTCCCACTGGAAATTTAGTCATGACAGCAGAAGATACTCTTTATGAAGGAAGCATATCAAGAGATTTAGTTGCAGAAGTAGCTGTTGAGGCATTGGTTCTTTCCCAAGCCTCTTACAAGGTTGTCGAAATAGTTTCCCGAGCTGATGCGCCAAAGCGTTCATATGAGGATCTTTTTGGCTCCATAAAGCAGTGTCAGTTGAAGACGTCTTATCCTCAAAATTGA 3465 44.42 MMAVNLNERGIRGIVFTLETLRKNRAHKLKVIFGAFSLLPLPCGLRRCALRRSSIGSAQPGLGLPESGPVWSALLFISSVVRFSIDMSRVANQKLFGLSIQGSLSLAVSLRRFVDEGAKQRKVRDKEMDVGEEIRAAHKRDFLEFLEQDVGKGIYMDEIKAMINHKRHRLIINISDLHSFRDLGPRVLRNPSEYIQPFCDAVTETARSIDPKYLKEGEQVLVGFEGPFVSRRVTPRELLSQFIGSMVCVEGIVTKCSLVRPKVVKSVHFCPTTGGFTSREYRDITSNMGLPTGSVYPTRDDNGNLLVTEYGLCRYKDHQTLSMQEMPENSAPGQLPRTVDIIVEDDLVDCCKPGDRVAIVGIYKALPGKSKGSLNGVFRTVLVANNVSLLNKEANAPIYSPEDLKNIKKIAERDDTFDLLGNSLAPSIYGHSWIKKAVILLMLSGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGSYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRHISEHVLRMHRYRSVLDGGEAGGSVYGREDEAEADTSVFVKYNRMLHGKKIERGRKRDTLTIKFLKKYIHYAKHRIQPDLTDEASEQIATAYAELRNSTSNAKTGGTLPITARTLETIIRLSTAHAKLKLSRKVSKSDVEAALKVLNFAIYHKELTDMEEREQEREKELERKRRAEHQTVENDRPERSTKRREEGSRTDTMEIDDPPSEPVLDLSAERIEAFNSLFGQHMRANHLDVISIADIENVVNAAADTHYTTAEIMLLLQRLQDDNRMEGNEITEEVGEKQSEENLNVKRKIFVAGASGSTGKRIVEQLLARGFAVKAGVRDVSKAKSTLSPGNPALQIVRADVTEGSAKLAEAIGSDSEAVICATGFRRGWDLFAPWKVDNLGTVNLVEACRELGINRFILISSILVNGAAMGQILNPAYIFLNVLGLTLIAKLQAEQHIRKSGINYTIIRPGGLKNEPPTGNLVMTAEDTLYEGSISRDLVAEVAVEALVLSQASYKVVEIVSRADAPKRSYEDLFGSIKQCQLKTSYPQN 1154
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 37778659 37789758 + CrPI670011_04g020570.1 Cre04g2057 496361

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g2057 1154 ProSitePatterns MCM family signature. 525 533 IPR018525 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006260(InterPro)
Cre04g2057 1154 FunFam DNA helicase 262 316 - -
Cre04g2057 1154 Pfam MCM P-loop domain 404 626 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cre04g2057 1154 FunFam DNA helicase 132 231 - -
Cre04g2057 1154 CDD SDR_a5 912 1127 - -
Cre04g2057 1154 CDD MCM3 419 765 - -
Cre04g2057 1154 PRINTS Mini-chromosome maintenance (MCM) protein family signature 457 472 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cre04g2057 1154 PRINTS Mini-chromosome maintenance (MCM) protein family signature 569 581 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cre04g2057 1154 PRINTS Mini-chromosome maintenance (MCM) protein family signature 596 604 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cre04g2057 1154 PRINTS Mini-chromosome maintenance (MCM) protein family signature 545 558 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cre04g2057 1154 PRINTS Mini-chromosome maintenance (MCM) protein family signature 517 531 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cre04g2057 1154 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 618 628 IPR008046 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)
Cre04g2057 1154 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 334 346 IPR008046 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)
Cre04g2057 1154 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 585 595 IPR008046 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)
Cre04g2057 1154 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 754 769 IPR008046 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)
Cre04g2057 1154 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 308 322 IPR008046 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)
Cre04g2057 1154 Coils Coil 768 794 - -
Cre04g2057 1154 MobiDBLite consensus disorder prediction 774 820 - -
Cre04g2057 1154 MobiDBLite consensus disorder prediction 774 825 - -
Cre04g2057 1154 Pfam MCM OB domain 236 366 IPR033762 -
Cre04g2057 1154 Pfam MCM N-terminal domain 139 225 IPR027925 -
Cre04g2057 1154 Gene3D - 895 1134 - -
Cre04g2057 1154 Pfam MCM AAA-lid domain 680 763 IPR041562 -
Cre04g2057 1154 ProSiteProfiles MCM family domain profile. 416 622 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cre04g2057 1154 Gene3D - 236 366 IPR012340 -
Cre04g2057 1154 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 426 779 IPR027417 -
Cre04g2057 1154 SUPERFAMILY Nucleic acid-binding proteins 140 384 IPR012340 -
Cre04g2057 1154 Gene3D - 262 316 - -
Cre04g2057 1154 Gene3D - 398 788 IPR027417 -
Cre04g2057 1154 Gene3D - 131 226 - -
Cre04g2057 1154 Pfam NAD(P)H-binding 917 1112 IPR016040 -
Cre04g2057 1154 SMART AAA_5 458 611 IPR003593 GO:0016887(InterPro)
Cre04g2057 1154 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 911 1126 IPR036291 -
Cre04g2057 1154 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 131 859 IPR031327 GO:0000727(PANTHER)|GO:0003677(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0006271(PANTHER)|GO:0017116(PANTHER)|GO:0032508(InterPro)|GO:0042555(PANTHER)|GO:1902975(PANTHER)
Cre04g2057 1154 SMART mcm 231 767 IPR031327 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g2057 K02541 - - csv:101210889 1447.57
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g2057 Cre-Chr4:37778659 Cre09g0492 Cre-Chr9:4663721 5.30E-95 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi10g383 . . . . . . . . . . Cma03g01389 Cma07g00116 Car03g01244 Car07g00103 Sed14g1593 . Cpe10g00097 Bhi03g00063 Tan03g2686 Cmetu01g0570 . Hepe04g1985 . . Cla01g02394 Cam01g2507 Cec04g2154 Cco04g2231 Clacu01g2525 Cmu01g2391 Cre04g2057 Cone1ag0252 Cone5ag1599 . . Lsi01g00160 Csa06g03778 . Cme08g00149 . . . . . . . . . Cmo03g01382 . . . . . Cpe19g01129 . . . . . . . . . . . . . . . . . Chy02g00155 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre08g0009 . 105 876 Core DNA Replication Machinery Family AT4G14700 59.1 3.0e-254 875.2
Cre08g0009 . 105 876 Core DNA Replication Machinery Family AT4G12620 61.2 1.6e-263 906.0
Cre08g1518 . 65 425 Core DNA Replication Machinery Family AT2G37560 65.7 3.0e-142 501.9
Cre07g0857 . 9 410 Core DNA Replication Machinery Family AT2G01120 64.8 3.9e-152 535.0
Cre06g1130 . 2 453 Core DNA Replication Machinery Family AT4G29910 60.4 6.1e-153 538.1
Cre11g1348 . 1 283 Core DNA Replication Machinery Family AT1G26840 66.1 4.2e-94 341.7
Cre01g0220 . 61 854 Core DNA Replication Machinery Family AT1G79150 59.6 2.1e-247 852.4
Cre10g1454 . 8 940 Core DNA Replication Machinery Family AT1G44900 75.5 0.0e+00 1350.9
Cre04g2057 . 128 702 Core DNA Replication Machinery Family AT5G46280 81.0 8.9e-269 922.9
Cre02g0837 . 99 845 Core DNA Replication Machinery Family AT2G16440 77.2 0.0e+00 1142.5
Cre11g0844 . 1 735 Core DNA Replication Machinery Family AT2G07690 78.4 0.0e+00 1112.4
Cre04g2202 . 7 835 Core DNA Replication Machinery Family AT5G44635 71.2 0.0e+00 1167.9
Cre09g0492 . 4 722 Core DNA Replication Machinery Family AT4G02060 85.3 0.0e+00 1219.9
Cre02g2271 . 55 521 Core DNA Replication Machinery Family AT2G29680 61.9 5.8e-163 571.2
Cre02g2271 . 37 482 Core DNA Replication Machinery Family AT1G07270 58.8 2.1e-143 506.1
Cre09g0839 . 1 593 Core DNA Replication Machinery Family AT3G25100 76.0 1.1e-256 882.9
Cre10g2170 . 12 792 Core DNA Replication Machinery Family AT3G09660 73.0 0.0e+00 1094.3
Cre09g1589 . 58 456 Core DNA Replication Machinery Family AT2G14050 85.7 3.5e-197 685.3
Cre09g1588 . 9 238 Core DNA Replication Machinery Family AT2G14050 68.7 2.5e-86 317.0
Cre02g1504 . 1 411 Core DNA Replication Machinery Family AT2G20980 56.4 6.9e-119 424.5
Cre09g0257 . 1 192 Core DNA Replication Machinery Family AT1G80190 67.5 1.1e-72 270.0
Cre11g1099 . 1 184 Core DNA Replication Machinery Family AT1G19080 69.0 4.3e-71 264.6
Cre11g1099 . 1 184 Core DNA Replication Machinery Family AT3G55490 69.0 4.3e-71 264.6
Cre05g0223 . 6 155 Core DNA Replication Machinery Family AT5G49010 65.3 2.8e-49 192.2
Cre02g1551 . 1 1546 Core DNA Replication Machinery Family AT5G67100 60.7 0.0e+00 1769.6
Cre01g1501 . 24 641 Core DNA Replication Machinery Family AT1G67630 59.5 9.8e-205 710.3
Cre06g0976 . 1 447 Core DNA Replication Machinery Family AT1G67320 64.5 2.9e-183 638.6
Cre08g0134 . 211 654 Core DNA Replication Machinery Family AT5G41880 65.5 1.7e-177 619.4
Cre04g1149 . 1 1086 Core DNA Replication Machinery Family AT5G63960 80.5 0.0e+00 1788.9
Cre10g1868 . 1 428 Core DNA Replication Machinery Family AT2G42120 74.8 8.5e-195 676.8
Cre06g0976 . 1 447 Core DNA Replication Machinery Family AT1G67320 64.5 2.9e-183 638.6
Cre09g1984 . 1 127 Core DNA Replication Machinery Family AT1G09815 61.5 5.5e-38 154.1
Cre02g2512 . 1 2095 Core DNA Replication Machinery Family AT1G08260 71.5 0.0e+00 2983.0
Cre01g0417 . 62 2110 Core DNA Replication Machinery Family AT1G08260 67.8 0.0e+00 2775.3
Cre02g2512 . 25 2202 Core DNA Replication Machinery Family AT2G27120 68.1 0.0e+00 2947.9
Cre01g0417 . 84 2190 Core DNA Replication Machinery Family AT2G27120 65.2 0.0e+00 2722.6
Cre01g1601 . 726 1192 Core DNA Replication Machinery Family AT5G22110 66.2 6.7e-180 627.5
Cre02g2561 . 273 1004 Core DNA Replication Machinery Family AT5G22010 73.4 1.2e-302 1036.2
Cre10g0592 . 3 332 Core DNA Replication Machinery Family AT1G63160 91.5 2.4e-173 605.1
Cre04g0578 . 1 354 Core DNA Replication Machinery Family AT5G27740 85.3 1.2e-178 622.9
Cre11g2009 . 19 337 Core DNA Replication Machinery Family AT1G21690 81.6 2.3e-144 508.8
Cre08g0540 . 1 363 Core DNA Replication Machinery Family AT1G77470 76.1 1.9e-155 545.8
Cre11g0650 . 26 604 Core DNA Replication Machinery Family AT2G06510 68.1 4.8e-244 840.9
Cre10g0366 . 32 703 Core DNA Replication Machinery Family AT2G06510 50.3 4.1e-195 678.3
Cre06g2422 . 1 623 Core DNA Replication Machinery Family AT5G08020 68.1 7.0e-248 853.6
Cre10g0366 . 10 812 Core DNA Replication Machinery Family AT5G45400 50.7 9.6e-227 783.9
Cre06g2422 . 1 618 Core DNA Replication Machinery Family AT5G61000 65.9 3.3e-240 828.2
Cre10g0366 . 5 798 Core DNA Replication Machinery Family AT4G19130 53.7 3.7e-225 778.5
Cre03g2054 . 1 376 Core DNA Replication Machinery Family AT5G26680 85.7 6.4e-184 640.6
Cre05g0360 . 1 1110 Core DNA Replication Machinery Family AT1G08840 52.5 8.0e-300 1026.9
Cre07g1923 . 1 297 Core DNA Replication Machinery Family AT2G25100 67.0 1.4e-115 412.9
Cre02g2464 . 2 762 Core DNA Replication Machinery Family AT1G08130 69.1 1.4e-296 1015.8
Cre02g2464 . 162 762 Core DNA Replication Machinery Family AT1G49250 69.1 2.1e-242 835.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011182 1 1 1 0 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 31