Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cre04g2057 | ATGATGGCTGTGAATTTAAACGAAAGAGGTATCAGGGGAATAGTATTTACCCTTGAGACGCTTCGGAAGAATCGTGCCCATAAGCTGAAGGTGATTTTTGGGGCTTTTTCGCTTTTGCCATTGCCCTGCGGCCTGCGCCGTTGTGCTCTCCGTCGGTCTTCAATTGGCAGCGCTCAGCCCGGACTCGGTCTTCCCGAGTCTGGACCGGTTTGGAGTGCCCTTCTGTTTATTTCTTCTGTCGTCCGCTTCTCAATTGACATGTCTCGTGTGGCCAATCAGAAGCTCTTCGGTCTCTCAATTCAAGGTTCTCTCTCACTCGCTGTCTCTCTCCGCCGGTTCGTCGACGAAGGAGCAAAGCAGAGGAAAGTTAGGGACAAGGAAATGGACGTTGGCGAAGAAATTAGGGCAGCTCACAAGCGAGATTTTCTGGAATTCCTTGAACAGGATGTTGGGAAAGGAATTTACATGGACGAGATCAAAGCCATGATTAATCATAAGCGACATCGGCTCATAATCAACATTTCTGATCTTCATTCTTTCAGAGATCTTGGCCCCAGGGTGCTCAGGAATCCCAGTGAGTACATTCAGCCATTCTGTGACGCAGTCACAGAAACTGCTCGCAGTATCGACCCAAAATACCTTAAGGAAGGAGAGCAAGTTTTGGTGGGCTTTGAGGGCCCCTTTGTTTCTCGCCGTGTCACTCCCAGGGAACTTCTCTCTCAGTTTATTGGCTCCATGGTCTGCGTTGAGGGCATTGTTACCAAATGTTCTCTTGTTAGACCAAAAGTTGTCAAAAGTGTCCATTTCTGCCCCACAACTGGAGGTTTTACCAGCCGTGAATACCGTGACATTACATCCAACATGGGCTTGCCCACAGGATCTGTGTATCCCACAAGGGATGACAATGGCAACTTGTTGGTTACTGAGTATGGCCTGTGTAGATATAAAGATCATCAGACCTTATCAATGCAAGAAATGCCTGAGAATTCAGCACCTGGTCAGCTTCCACGAACAGTGGATATCATAGTTGAGGACGACTTAGTTGACTGTTGCAAGCCAGGTGATCGTGTTGCTATTGTAGGAATATATAAAGCTCTTCCAGGAAAAAGCAAGGGCAGCTTGAATGGAGTGTTCAGGACTGTTCTTGTTGCTAACAATGTTTCTCTACTAAACAAGGAGGCTAATGCACCAATATATAGTCCTGAGGACTTGAAGAACATTAAAAAGATAGCGGAAAGAGATGACACATTTGACCTTCTCGGAAATTCTCTTGCACCTTCCATATATGGACATTCATGGATAAAAAAAGCCGTGATACTATTGATGCTTAGTGGAGTGGAGAAGAACTTGAAGAATGGCACCCACTTAAGAGGTGATATCAACATGATGATGGTTGGTGATCCTTCTGTTGCCAAGTCACAACTTTTAAGGGCAATCATGAATATTGCACCCTTAGCAATATCCACAACAGGCCGTGGTTCATCTGGTGTCGGGTTAACTGCTGCTGTTACATCAGATCAGGAAACAGGAGAACGAAGGCTAGAAGCTGGTGCAATGGTTCTTGCTGATCGAGGTGTTGTCTGTATTGATGAGTTTGACAAGATGAATGATCAAGATAGGGTTGCAATACATGAAGTTATGGAGCAGCAGACTGTGACTATTGCCAAAGCTGGCATTCATGCTTCACTGAATGCTCGGTGCAGTGTGGTAGCAGCTGCAAATCCCATATATGGATCTTACGATCGATCGTTGACACCAACAAAGAATATAGGTCTTCCAGACTCTCTACTCTCTCGATTTGATCTACTGTTTATTGTATTGGATCAAATGGATCCCGATATTGATCGTCATATTTCGGAGCATGTGTTGCGTATGCACCGGTATCGTTCAGTACTTGATGGAGGTGAGGCTGGGGGCTCAGTGTATGGAAGAGAGGATGAAGCTGAAGCTGACACTTCTGTCTTTGTCAAGTATAATAGAATGCTTCATGGGAAAAAGATTGAACGTGGTCGGAAGCGTGATACCCTCACCATCAAGTTTCTTAAGAAGTACATTCATTATGCTAAGCATAGGATACAACCCGATCTAACTGATGAGGCATCTGAGCAAATTGCAACAGCATATGCAGAACTTAGAAATTCAACTTCAAATGCGAAGACTGGAGGAACTCTTCCAATTACCGCGAGAACCCTGGAAACCATTATACGACTCTCAACTGCCCATGCGAAATTAAAGTTGAGTAGAAAGGTTTCCAAATCTGATGTCGAGGCTGCCTTGAAAGTTCTTAATTTTGCCATATATCATAAAGAGTTGACTGACATGGAAGAGCGTGAGCAAGAAAGAGAGAAAGAATTGGAAAGAAAACGCAGAGCTGAACATCAAACAGTGGAAAATGATAGACCAGAACGTAGTACCAAAAGAAGAGAGGAGGGCTCAAGGACAGATACCATGGAAATCGATGATCCTCCTTCTGAGCCTGTACTTGATCTGTCTGCAGAAAGAATAGAAGCATTCAATTCTTTGTTTGGTCAGCACATGCGTGCAAACCACCTGGATGTTATATCTATTGCTGACATTGAGAATGTCGTTAATGCTGCAGCAGATACTCATTACACTACCGCTGAAATAATGTTGCTCTTGCAGAGACTGCAAGATGATAACAGGATGGAAGGAAATGAAATTACGGAGGAAGTTGGAGAGAAACAAAGCGAGGAAAATTTAAATGTGAAGAGAAAGATTTTTGTGGCCGGTGCATCCGGAAGTACTGGAAAAAGGATTGTGGAGCAGTTGCTGGCAAGAGGCTTTGCAGTCAAGGCCGGGGTTCGAGACGTAAGCAAGGCTAAATCTACTCTTTCCCCGGGCAATCCTGCTCTTCAAATTGTAAGAGCGGATGTGACTGAAGGCTCTGCAAAGTTGGCAGAAGCCATAGGTTCTGATTCTGAAGCAGTAATTTGTGCTACGGGCTTTCGCCGAGGATGGGATTTATTTGCGCCATGGAAGGTTGACAATTTAGGCACTGTAAACCTAGTTGAAGCATGCCGTGAGCTGGGCATAAACAGATTTATTCTGATCAGTTCCATTTTAGTCAATGGAGCTGCAATGGGACAGATTCTCAACCCAGCTTATATCTTTTTAAATGTCTTGGGACTCACCTTGATTGCAAAGCTTCAAGCAGAGCAGCACATCAGGAAATCCGGTATCAACTACACAATCATAAGGCCTGGAGGTTTGAAAAATGAGCCTCCCACTGGAAATTTAGTCATGACAGCAGAAGATACTCTTTATGAAGGAAGCATATCAAGAGATTTAGTTGCAGAAGTAGCTGTTGAGGCATTGGTTCTTTCCCAAGCCTCTTACAAGGTTGTCGAAATAGTTTCCCGAGCTGATGCGCCAAAGCGTTCATATGAGGATCTTTTTGGCTCCATAAAGCAGTGTCAGTTGAAGACGTCTTATCCTCAAAATTGA | 3465 | 44.42 | MMAVNLNERGIRGIVFTLETLRKNRAHKLKVIFGAFSLLPLPCGLRRCALRRSSIGSAQPGLGLPESGPVWSALLFISSVVRFSIDMSRVANQKLFGLSIQGSLSLAVSLRRFVDEGAKQRKVRDKEMDVGEEIRAAHKRDFLEFLEQDVGKGIYMDEIKAMINHKRHRLIINISDLHSFRDLGPRVLRNPSEYIQPFCDAVTETARSIDPKYLKEGEQVLVGFEGPFVSRRVTPRELLSQFIGSMVCVEGIVTKCSLVRPKVVKSVHFCPTTGGFTSREYRDITSNMGLPTGSVYPTRDDNGNLLVTEYGLCRYKDHQTLSMQEMPENSAPGQLPRTVDIIVEDDLVDCCKPGDRVAIVGIYKALPGKSKGSLNGVFRTVLVANNVSLLNKEANAPIYSPEDLKNIKKIAERDDTFDLLGNSLAPSIYGHSWIKKAVILLMLSGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGSYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRHISEHVLRMHRYRSVLDGGEAGGSVYGREDEAEADTSVFVKYNRMLHGKKIERGRKRDTLTIKFLKKYIHYAKHRIQPDLTDEASEQIATAYAELRNSTSNAKTGGTLPITARTLETIIRLSTAHAKLKLSRKVSKSDVEAALKVLNFAIYHKELTDMEEREQEREKELERKRRAEHQTVENDRPERSTKRREEGSRTDTMEIDDPPSEPVLDLSAERIEAFNSLFGQHMRANHLDVISIADIENVVNAAADTHYTTAEIMLLLQRLQDDNRMEGNEITEEVGEKQSEENLNVKRKIFVAGASGSTGKRIVEQLLARGFAVKAGVRDVSKAKSTLSPGNPALQIVRADVTEGSAKLAEAIGSDSEAVICATGFRRGWDLFAPWKVDNLGTVNLVEACRELGINRFILISSILVNGAAMGQILNPAYIFLNVLGLTLIAKLQAEQHIRKSGINYTIIRPGGLKNEPPTGNLVMTAEDTLYEGSISRDLVAEVAVEALVLSQASYKVVEIVSRADAPKRSYEDLFGSIKQCQLKTSYPQN | 1154 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 37778659 | 37789758 | + | CrPI670011_04g020570.1 | Cre04g2057 | 496361 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cre04g2057 | 1154 | ProSitePatterns | MCM family signature. | 525 | 533 | IPR018525 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006260(InterPro) | |
| Cre04g2057 | 1154 | FunFam | DNA helicase | 262 | 316 | - | - | |
| Cre04g2057 | 1154 | Pfam | MCM P-loop domain | 404 | 626 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cre04g2057 | 1154 | FunFam | DNA helicase | 132 | 231 | - | - | |
| Cre04g2057 | 1154 | CDD | SDR_a5 | 912 | 1127 | - | - | |
| Cre04g2057 | 1154 | CDD | MCM3 | 419 | 765 | - | - | |
| Cre04g2057 | 1154 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 457 | 472 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cre04g2057 | 1154 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 569 | 581 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cre04g2057 | 1154 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 596 | 604 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cre04g2057 | 1154 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 545 | 558 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cre04g2057 | 1154 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 517 | 531 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cre04g2057 | 1154 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 618 | 628 | IPR008046 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Cre04g2057 | 1154 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 334 | 346 | IPR008046 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Cre04g2057 | 1154 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 585 | 595 | IPR008046 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Cre04g2057 | 1154 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 754 | 769 | IPR008046 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Cre04g2057 | 1154 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 308 | 322 | IPR008046 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Cre04g2057 | 1154 | Coils | Coil | 768 | 794 | - | - | |
| Cre04g2057 | 1154 | MobiDBLite | consensus disorder prediction | 774 | 820 | - | - | |
| Cre04g2057 | 1154 | MobiDBLite | consensus disorder prediction | 774 | 825 | - | - | |
| Cre04g2057 | 1154 | Pfam | MCM OB domain | 236 | 366 | IPR033762 | - | |
| Cre04g2057 | 1154 | Pfam | MCM N-terminal domain | 139 | 225 | IPR027925 | - | |
| Cre04g2057 | 1154 | Gene3D | - | 895 | 1134 | - | - | |
| Cre04g2057 | 1154 | Pfam | MCM AAA-lid domain | 680 | 763 | IPR041562 | - | |
| Cre04g2057 | 1154 | ProSiteProfiles | MCM family domain profile. | 416 | 622 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cre04g2057 | 1154 | Gene3D | - | 236 | 366 | IPR012340 | - | |
| Cre04g2057 | 1154 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 426 | 779 | IPR027417 | - | |
| Cre04g2057 | 1154 | SUPERFAMILY | Nucleic acid-binding proteins | 140 | 384 | IPR012340 | - | |
| Cre04g2057 | 1154 | Gene3D | - | 262 | 316 | - | - | |
| Cre04g2057 | 1154 | Gene3D | - | 398 | 788 | IPR027417 | - | |
| Cre04g2057 | 1154 | Gene3D | - | 131 | 226 | - | - | |
| Cre04g2057 | 1154 | Pfam | NAD(P)H-binding | 917 | 1112 | IPR016040 | - | |
| Cre04g2057 | 1154 | SMART | AAA_5 | 458 | 611 | IPR003593 | GO:0016887(InterPro) | |
| Cre04g2057 | 1154 | SUPERFAMILY | NAD(P)-binding Rossmann-fold domains | 911 | 1126 | IPR036291 | - | |
| Cre04g2057 | 1154 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 131 | 859 | IPR031327 | GO:0000727(PANTHER)|GO:0003677(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0006271(PANTHER)|GO:0017116(PANTHER)|GO:0032508(InterPro)|GO:0042555(PANTHER)|GO:1902975(PANTHER) | |
| Cre04g2057 | 1154 | SMART | mcm | 231 | 767 | IPR031327 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cre04g2057 | Cre-Chr4:37778659 | Cre09g0492 | Cre-Chr9:4663721 | 5.30E-95 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cre04g2057 | K02541 | - | csv:101210889 | 1447.57 |