Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g2093 ATGAAGTCGGCCATTGAAGAGTTGTTCGTTGTTGCCTTCTTGGAAGATACTTTGGTGCTTCAAATTTGTGGGTCAATTTCTTTTTGTTTGTTGGATCTCACTGAAATGAGGCTTTCAACTGCTGGTTTCAGTCCTCAGGCCCCGGAAGGGGAGGGGAGAGTTCTTAACTCGGAGCTTTGGCATGCATGTGCGGGCCCTCTTGTTTCTCTACCTGCTGTTGGAAGTCGGGTTGTTTATTTTCCACAGGGTCATAGCGAGCAGGTTGCCATATCAACCAACAGAGAAGTCGATGCCCATATACCGAGTTATCCAAGCTTGCCGCCCCAACTTATCTGTCAGCTTCACAATGTTACAATGCATGCAGATGTTGAGACAGATGAAGTGTATGCCCAAATGACCTTGCAACCGCTCACTGCTCAAGAGCAAAAGGAGCCTTATCTTCCAGCTGAGTTGGGTGCCCCCAGCAAACAACCAACCAATTATTTTTGTAAAACATTGACAGCAAGTGACACAAGTACACATGGAGGATTTTCTGTTCCTCGTCGTGCTGCTGAGAAAGTGTTTCCTCCACTGGACTTTTCTCAGCAGCCACCGGCTCAGGAGTTAATTGCCAGGGATCTGCACGATAATGAATGGAAATTTAGGCATATCTTTCGTGGCCAGCCCAAACGGCATCTTCTTACAACTGGATGGAGTGTGTTTGTAAGTGCTAAGAGGCTTGTTGCTGGCGATTCAGTTATCTTTATTTGGAATGAAAAAAATCAATTACTATTGGGGATCCGTCGAGCTAATCGACCACAAACGGTAATGCCCTCGTCCGTTTTATCTAGTGACAGCATGCACTTGGGGCTTCTTGCTGCTGCAGCACATGCAGCTGCTACAAATAGCCGGTTCACGATATTTTATAATCCAAGGGCTAGCCCGTCAGAGTTCATCATACCTCTAGCCAAGTATGTCAAAGCTGTGTACCATACCCGTGTTTCAGTTGGTATGCGCTTTAGAATGCTATTTGAAACGGAAGAATCAAGTGTTCGTCGTTACATGGGCACTATTACCGGTATCGGCGATTTAGATTCTACCCGGTGGCCAAATTCACACTGGCGCTCAGTCAAGGTTGGATGGGATGAATCTACAGCTGGGGAGAGACAGCCAAGGGTTTCCTTATGGGAGATTGAGCCGCTTACAACCTTCCCAATGTATCCTTCTCCATTTCCCCTCAGGCTTAAGCGACCCTGGCCAACTGGATTTCCTTCTTTCCATGGTCTCAAAGAGGATGATCTGGGATTGAATTCTCAACTAATGTGGCTTCGGGGAGATGGTCTAGATCGTGGAATTCAACCTCTGAACTTCCCCGGAATTGGAGTTGCACCATGGATGCAGCCGAGGCTTGATGCTTCAATGGTGGGTCTGCAGCCAGAGATATATCAAGCAATGGCTGCTGCTGCACTACAGGAGATGAGAACTGTAGATCCTGCTAAGGCGCAGGCTGCTTCGCTTCTTCAATTCCAACAAACCCAAAATCTTCCCAACAGACCTACTTTCATGCCACCTCAGATGTTGCAGCCTCAGCCTCAATCTCAGCCTCCCCAGACCTTTCTTCAAGGTGATGAAAACCAACATCTCTCTCATTCTCAGGCCCAAAGCCAGCCTACTGTTCTTCAGCAGGAGATAAAGCATCAAACATTCAACAACCACCAGCAGCAGCAGCAGCAGCAACAACAACAACAGCAACAACCACAACAGCAAGTGTTTGATCACCAACAAATTCCAAGTCCCATATCTACAATGTCTCAGTTCAGTTCTGCATCCCAATCCCAATCCCAATCCCTGCAAACTATTCCTCCATTATGTCGGCAGCAAAGTTTTTCTGATTCTAATGCCAACCATGTAACGAGTCCCATCATTTCACCCTTGCACAGCCTGTTAGGTTCATTTCCGCAAGATGAATCATCTCAGTTGCTTAATCTGCCTCGAACCAATCCCATGATACATTCATCTACTTGGCCGTCAAAGCGAGCTGCAGTGGATCCTCTTCTCTCTTCTGGAAATTCTCAGTTTGTTCTTTCCCAAGGGGAAAACATGGGGACAACTCAGACTAATATCTCTCAGAATGCTATTTTGTTGCCGCCTTTTCCTGGAAGAGAGTGTTCATTAGATCAAGGGAATGCTGATCCGCAGAGTAATCTTCTCTTTGGTGTCAATATAGAGCCTTCATCTCTTTTAATGCAGAATGGCATGCCAAATCTTAGGGGAATTTGCAGTGACAGTGATTCAACAGCTATACCTTTTGCATCCAATTATGTGAATACTGCTGGTAACAACTTCTCTGCCAGTCCAACTGGAACAGGGACACCTTCCAATTGCATTGAGGATTCAGGTTTCTTGCAGTCTCCAGAAAACACAGGCCAAGTAAACCCACCAACCAGAACCTTTGTAAAGGTTTACAAGTCGGGGTCCTTCGGTAGATCACTGGATATTTCCAAATTCAGTAGCTACCATCAGCTACGCAGTGAGCTCGCTCACATGTTCGGCCTTGAAGGCGAGTTGGAGGACCCTTTGAGATCAGGCTGGCAGCTTGTATTCGTTGACCGGGAAAATGACGTCCTTCTTCTTGGGGACGATCCCTGGCCGGAATTTGTCAACAGTGTGTGGTGTATCAAAATACTTTCACCACAGGAAGTGCAGGAGATGGGCAAACGCGGCCTAGAGCTCTTGAACTCGGTCCCGATTCAGAGGCTCTCAAATGGCAGTTGTGATAACTACGCCAATAGACAGGAATCATCCAGAAATTTGAGTACCGGGATAACTTCTGTCGGGTCTCTCGAGTACTGA 2832 46.82 MKSAIEELFVVAFLEDTLVLQICGSISFCLLDLTEMRLSTAGFSPQAPEGEGRVLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAISTNREVDAHIPSYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTAQEQKEPYLPAELGAPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFIIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGIGDLDSTRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPTGFPSFHGLKEDDLGLNSQLMWLRGDGLDRGIQPLNFPGIGVAPWMQPRLDASMVGLQPEIYQAMAAAALQEMRTVDPAKAQAASLLQFQQTQNLPNRPTFMPPQMLQPQPQSQPPQTFLQGDENQHLSHSQAQSQPTVLQQEIKHQTFNNHQQQQQQQQQQQQQPQQQVFDHQQIPSPISTMSQFSSASQSQSQSLQTIPPLCRQQSFSDSNANHVTSPIISPLHSLLGSFPQDESSQLLNLPRTNPMIHSSTWPSKRAAVDPLLSSGNSQFVLSQGENMGTTQTNISQNAILLPPFPGRECSLDQGNADPQSNLLFGVNIEPSSLLMQNGMPNLRGICSDSDSTAIPFASNYVNTAGNNFSASPTGTGTPSNCIEDSGFLQSPENTGQVNPPTRTFVKVYKSGSFGRSLDISKFSSYHQLRSELAHMFGLEGELEDPLRSGWQLVFVDRENDVLLLGDDPWPEFVNSVWCIKILSPQEVQEMGKRGLELLNSVPIQRLSNGSCDNYANRQESSRNLSTGITSVGSLEY 943
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 38145730 38151037 - CrPI670011_04g020930.1 Cre04g2093 496397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g2093 943 MobiDBLite consensus disorder prediction 525 585 - -
Cre04g2093 943 Gene3D - 326 398 - -
Cre04g2093 943 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 55 900 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cre04g2093 943 Pfam Auxin response factor 288 370 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cre04g2093 943 CDD B3_DNA 161 262 IPR003340 GO:0003677(InterPro)
Cre04g2093 943 ProSiteProfiles PB1 domain profile. 809 893 IPR053793 -
Cre04g2093 943 FunFam Auxin response factor 160 264 - -
Cre04g2093 943 FunFam Auxin response factor 326 398 - -
Cre04g2093 943 SUPERFAMILY CAD & PB1 domains 801 884 - -
Cre04g2093 943 Gene3D - 806 898 - -
Cre04g2093 943 ProSiteProfiles B3 DNA-binding domain profile. 162 264 IPR003340 GO:0003677(InterPro)
Cre04g2093 943 Pfam B3 DNA binding domain 162 264 IPR003340 GO:0003677(InterPro)
Cre04g2093 943 FunFam Auxin response factor 804 898 - -
Cre04g2093 943 Gene3D - 160 263 IPR015300 -
Cre04g2093 943 SUPERFAMILY DNA-binding pseudobarrel domain 147 291 IPR015300 -
Cre04g2093 943 SMART B3_2 162 264 IPR003340 GO:0003677(InterPro)
Cre04g2093 943 Pfam AUX/IAA family 806 898 IPR033389 -
Cre04g2093 943 MobiDBLite consensus disorder prediction 593 612 - -
Cre04g2093 943 MobiDBLite consensus disorder prediction 508 585 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g2093 Cre-Chr4:38145730 Cre11g0526 Cre-Chr11:2250320 1.40E-13 dispersed
Cre05g2020 Cre-Chr5:32216306 Cre04g2093 Cre-Chr4:38145730 6.30E-174 transposed
Cre09g1706 Cre-Chr9:35179143 Cre04g2093 Cre-Chr4:38145730 8.80E-151 transposed
Cre11g0629 Cre-Chr11:3472763 Cre04g2093 Cre-Chr4:38145730 3.30E-174 transposed
Cre11g1577 Cre-Chr11:25551383 Cre04g2093 Cre-Chr4:38145730 1.60E-168 transposed
Cre03g1075 Cre-Chr3:9915849 Cre04g2093 Cre-Chr4:38145730 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53556 PF02309 AUX_IAA 3.10E-07 CL0072 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g2093 K14486 - csv:101210406 1683.31