Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g2117 ATGGCGCTTGTCATGCACAAAGATTCATCGAACAAACAAATGGATTCAAGCAAATACGTACGGTATACACCCGAGCAAGTTGAGGCATTAGAGAGAGTTTATGCAGAATGTCCGAAGCCTAGTTCTCTCAGAAGGCAGCAGCTCATTAGAGAGTGCCCTATCCTTTCTAACATTGAGCCTAAGCAGATCAAAGTTTGGTTTCAAAATCGCAGATGCCGTGAGAAGCAGAGGAAGGAATCATCTCGCCTCCAGAGCGTAAATAGAAAGTTGTCTGCGATGAACAAATTGTTGATGGAGGAGAATGACCGTTTACAGAAGCAGGTGTCTCATTTGGTGTATGAGAATGGCTATATGCGCCAGCAACTGCATAGTGCATCTGGGACGACTACAGACAATAGCTGTGAGTCTGTAGTCATGAGCGGTCAGCCTCAACAACAGCAAAACCCAAATCCTCAGCATTCCAATAGGGATGTTAACAACCCAGCTGGTCTTCTCGCGATAGCTGAGGAGACCCTGGCAGAGTTCCTTTCCAAGGCTACAGGAACTGCTGTCGACTGGGTCCAGATGATTGGGATGAAGCCTGGTCCGGATTCTATTGGAATCGTTGCTGTTTCCCGCAATTGCAGTGGCGTAGCAGCACGAGCCTGTGGTCTTGTTAGTCTAGAGCCAACAAAGGTTGCAGAAATCCTCAAAGATCGCCTTTCATGGTATCGTGACTGCCGCTGTCTTAATGTCTTAAGTGTAATTCCTACGGGAAATGGGGGAACAGTAGAGCTCATATATATGCAGACTTATGCTCCAACGACATTAGCAGCAGCACGTGACTTCTGGACTATGAGATATACAACAAGTTTAGAAGATGGCAGTCTAGTGGTTTGTGAGAGGTCATTATCTACTTCAAGTGGTGGTCCAGCAGGGCCTCCGCCATCTACTTTTGTAAGAGCTGAGATGCTTCCTAGTGGCTATTTAATACGAGCGTGCGAGGGTGGTGGATCTATTATTCACATTGTTGATCACATTGATTTGGATGTTTGGAGTGTCCCTGAAGTTCTTAGGCCACTTTATGAGTCATCCAAGATCCTTGCTCAGAAAATGACACTTGCTGCATTGCGTCACATTAGACAAATTGCTCAGGAGACTAATGGAGAAATTCAATGTACTGGTGGACGTCAACCAGCTGTACTGAGGACGTTTAGTCAAAAACTTTGCAGGGGTTTTAACGATGCTGTCAACGGGTTTGCTGATGATGGTTGGTCACCTATGGGCAGTGATGGTGTGGAGGATGTGACAATTGTCATAAACTCATCAGCAAACAAGTTTCCTGGATCCCAGTACAACACGTCTTTGTATCCCTCTTTTGGCGGAGGAGTGATGTGTGCTAAAGCATCAATGTTGCTTCAGAATGTTCCCCCTGCTTTACTTGTTCGATTCCTGAGAGAGCATCGGTCTGAATGGGCTGATTATGGAGTTGATGCTTACTCTGCTGCAAGTTTAAAAGCCAGTCCGTATGCTGTTCCATGTGCAAGGCCTGGTGGCTTCCCTAGCAGCCAAGTTATTTTGCCTCTTGCTCCTACTGTGGAGCACGAGGAGTTTTTGGAGGTGGTTCGGTTGGAGGGCCTTGCATTCTCTCCTGAAGATGTTGCTTTGGCTGGACGAGATATGTACTTATTGCAGCTCTGTAGTGGTGTTGATGAGAATGCAGTTGGAGCTTGTGCTCAGCTTGTGTTTGCACCTATAGATGAATCTTTTGCTGATGATGCTCCCCTACTTCCTTCAGGGTTTCGTGTCATACCGCTGGATCCGAAAACGGATGAGCCTACTGCTGCTAGAACACTGGATTTGGCCTCTACACTTGAAGTTGGTGCCAATGCTGCACGATCTGCTGGTGAAACTGATTTGAGCAGCTACAACCTTCGTTCAGTCTTGACTATTGCTTTCCAGTTCACCTTTGAGAATCACTTACAGGAAAATGTGGCTGCTATGGCTCGACAATATGTTCGTAGTGTTGTTGGGTCAGTTCAGAGGGTTGCCATGGCCATTTCCCCTTCGCGGTTGAGTTCCAGTACGGGACTTAAGCCTCTTCCTGGTTCTCCTGAAGCTCTCACTTTGGCTCGATGGATTTGCCGAAGCTACAGGATCCATGTTGGAGTTGAACTCCTTCAAGCCGATTCCCAGTCTGGGGATGCCATGTTGAAGAAGCTCTGGCACCACTCCGACGCAATCATGTGTTGCTCTGTTAAAACCAACGCATCTGCTGTGTTCACCTTTGCTAACCAGGCTGGTCTGGACATGCTTGAAACCACCCTTGTTGGCCTGCAAGATATAATGCTGGACAAAATTCTCGATGAGGCAGGTCGGAAGATTCTTTGCTCTGAGTTCCCCAAAATAATGCAGCAGGGGTTCGCAAATCTTCCCTCGGGCATTTGCATATCCAGCATGGGCCGTCCCATTTCTTATGAGCAAGCCATTGCCTGGAAGGTTCTAAATGATGATGATTCCAATCACTGTCTGGCTTTCATGTTCATCAACTGGTCCTTTGTTTGA 2544 47.05 MALVMHKDSSNKQMDSSKYVRYTPEQVEALERVYAECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKESSRLQSVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQLHSASGTTTDNSCESVVMSGQPQQQQNPNPQHSNRDVNNPAGLLAIAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPTKVAEILKDRLSWYRDCRCLNVLSVIPTGNGGTVELIYMQTYAPTTLAAARDFWTMRYTTSLEDGSLVVCERSLSTSSGGPAGPPPSTFVRAEMLPSGYLIRACEGGGSIIHIVDHIDLDVWSVPEVLRPLYESSKILAQKMTLAALRHIRQIAQETNGEIQCTGGRQPAVLRTFSQKLCRGFNDAVNGFADDGWSPMGSDGVEDVTIVINSSANKFPGSQYNTSLYPSFGGGVMCAKASMLLQNVPPALLVRFLREHRSEWADYGVDAYSAASLKASPYAVPCARPGGFPSSQVILPLAPTVEHEEFLEVVRLEGLAFSPEDVALAGRDMYLLQLCSGVDENAVGACAQLVFAPIDESFADDAPLLPSGFRVIPLDPKTDEPTAARTLDLASTLEVGANAARSAGETDLSSYNLRSVLTIAFQFTFENHLQENVAAMARQYVRSVVGSVQRVAMAISPSRLSSSTGLKPLPGSPEALTLARWICRSYRIHVGVELLQADSQSGDAMLKKLWHHSDAIMCCSVKTNASAVFTFANQAGLDMLETTLVGLQDIMLDKILDEAGRKILCSEFPKIMQQGFANLPSGICISSMGRPISYEQAIAWKVLNDDDSNHCLAFMFINWSFV 847
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 38417369 38422652 - CrPI670011_04g021170.1 Cre04g2117 496421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g2117 847 Pfam Homeodomain 18 76 IPR001356 GO:0003677(InterPro)
Cre04g2117 847 CDD START_ArGLABRA2_like 161 377 - -
Cre04g2117 847 Pfam MEKHLA domain 702 846 IPR013978 -
Cre04g2117 847 SMART HOX_1 15 81 IPR001356 GO:0003677(InterPro)
Cre04g2117 847 SMART START_1 166 376 IPR002913 GO:0008289(InterPro)
Cre04g2117 847 FunFam Homeobox-leucine zipper protein REVOLUTA 18 73 - -
Cre04g2117 847 SUPERFAMILY Bet v1-like 167 378 - -
Cre04g2117 847 Gene3D - 9 85 - -
Cre04g2117 847 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 12 847 IPR044830 GO:0003700(InterPro)
Cre04g2117 847 ProSiteProfiles START domain profile. 157 385 IPR002913 GO:0008289(InterPro)
Cre04g2117 847 Pfam START domain 167 374 IPR002913 GO:0008289(InterPro)
Cre04g2117 847 CDD bZIP 70 109 - -
Cre04g2117 847 ProSiteProfiles 'Homeobox' domain profile. 13 77 IPR001356 GO:0003677(InterPro)
Cre04g2117 847 MobiDBLite consensus disorder prediction 123 159 - -
Cre04g2117 847 SUPERFAMILY Homeodomain-like 17 79 IPR009057 -
Cre04g2117 847 Coils Coil 83 107 - -
Cre04g2117 847 CDD homeodomain 18 78 IPR001356 GO:0003677(InterPro)
Cre04g2117 847 Gene3D - 200 385 IPR023393 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1223 Cre-Chr1:25114660 Cre04g2117 Cre-Chr4:38417369 0.00E+00 transposed
Cre02g2424 Cre-Chr2:37600869 Cre04g2117 Cre-Chr4:38417369 0.00E+00 transposed
Cre09g0009 Cre-Chr9:409823 Cre04g2117 Cre-Chr4:38417369 0.00E+00 transposed
Cre11g1929 Cre-Chr11:31064490 Cre04g2117 Cre-Chr4:38417369 0.00E+00 transposed
Cre03g1099 Cre-Chr3:10405006 Cre04g2117 Cre-Chr4:38417369 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53558 PF01852 START 4.90E-49 CL0209 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g2117 K09338 - csv:101210154 1640.17