Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre04g2118 | ATGATGGCATGCCCTAATCAAGTTTCATTTGGTGTGCACTGCAACCCCATGACTTCTTCTATCCATGATTATTCTGATAATGGTGAGGCTGATGAGCAGCAAAAGTACTCTGGATCTCAGAATCATTCTTCATCAATCGTAAATGGACTAAGTCAACCCACCATCGCAACTCCAAATCAGTATGTAACATCTCCTCAAGTTGGAGCAGGACATGCTATGGCACCCCCTGCTTATCCATATCCAGATCCTTATTACAGAAGCATCTTCACTCCCTATGATGCTCAACCATATCCTCCACAGCCCTATGGTGGGCAACCGATGGTCCATCTTCAATTAATGGGAATTCAGCAAGCTGGGGTTCCTTTGCCAACAGATGCAGTTGAGGAGCCTGTTTTTGTCAATGCTAAACAGTATCATGGCATTTTACGACGTCGACAGTCCCGCGCAAAAGCTGAATCCGAAAATAAAGCCCTAAAGTCTAGGAAGCCATATTTGCATGAATCTCGACATCTGCATGCATTAAGGAGAGCTAGAGGTTGTGGTGGACGGTTTCTCAAGTCAAATAAAAATGAGAATCATCAAAATGAAGTGGCATCAGCACATCTCAACAATTGTAAGGAAATTGAGGTCCCAATACCAGCTTCAGTTGTCTTAATTGGCACAGTACATAGTAACGCTGATGTTGCTGAAACTTTTATGGGAAGCTTTGTAATGGAAGGAGATGGAGTCGACAAGAGGAAACTACCTGACCATCCTTTTTTTCTCAAGAAACCTGAACATCTTTTGGGACTGGATCTAAGTGTTGACAGTTTTCTCTTATTTGCTTGTTCCTGCATTGAAGTAGCAGAAGAAGAAATGAGATTCTGTGGAGTCCCTATCAAAGGGCCATTCCTTGGAAATCAAACACTTTCTTTTGCTCATGGTCCTCTCCTGGTCAAGCCACTCTAA | 948 | 42.93 | MMACPNQVSFGVHCNPMTSSIHDYSDNGEADEQQKYSGSQNHSSSIVNGLSQPTIATPNQYVTSPQVGAGHAMAPPAYPYPDPYYRSIFTPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKALKSRKPYLHESRHLHALRRARGCGGRFLKSNKNENHQNEVASAHLNNCKEIEVPIPASVVLIGTVHSNADVAETFMGSFVMEGDGVDKRKLPDHPFFLKKPEHLLGLDLSVDSFLLFACSCIEVAEEEMRFCGVPIKGPFLGNQTLSFAHGPLLVKPL | 315 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 38430715 | 38437201 | - | CrPI670011_04g021180.1 | Cre04g2118 | 496422 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre04g2118 | 315 | Pfam | CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B | 129 | 184 | IPR001289 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre04g2118 | 315 | Gene3D | - | 127 | 188 | - | - | |
Cre04g2118 | 315 | ProSiteProfiles | NF-YA/HAP2 family profile. | 127 | 187 | IPR001289 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre04g2118 | 315 | MobiDBLite | consensus disorder prediction | 31 | 52 | - | - | |
Cre04g2118 | 315 | ProSitePatterns | NF-YA/HAP2 subunit signature. | 132 | 152 | IPR018362 | GO:0003677(InterPro)|GO:0016602(InterPro) | |
Cre04g2118 | 315 | PRINTS | CCAAT-binding transcription factor subunit B signature | 130 | 152 | IPR001289 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre04g2118 | 315 | PRINTS | CCAAT-binding transcription factor subunit B signature | 161 | 184 | IPR001289 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre04g2118 | 315 | SMART | cbf3 | 126 | 187 | IPR001289 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre04g2118 | 315 | MobiDBLite | consensus disorder prediction | 23 | 52 | - | - | |
Cre04g2118 | 315 | PANTHER | TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED | 25 | 196 | IPR001289 | GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre02g2617 | Cre-Chr2:39436827 | Cre04g2118 | Cre-Chr4:38430715 | 5.80E-27 | dispersed | |
Cre04g2118 | Cre-Chr4:38430715 | Cre11g0654 | Cre-Chr11:3645760 | 5.40E-26 | dispersed | |
Cre04g2118 | Cre-Chr4:38430715 | Cre09g0391 | Cre-Chr9:3845871 | 1.50E-28 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
53559 | PF02045 | CBFB_NFYA | 8.70E-26 | No_clan | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre04g2118 | K08064 | - | csv:101205549 | 317.775 |