Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g2118 ATGATGGCATGCCCTAATCAAGTTTCATTTGGTGTGCACTGCAACCCCATGACTTCTTCTATCCATGATTATTCTGATAATGGTGAGGCTGATGAGCAGCAAAAGTACTCTGGATCTCAGAATCATTCTTCATCAATCGTAAATGGACTAAGTCAACCCACCATCGCAACTCCAAATCAGTATGTAACATCTCCTCAAGTTGGAGCAGGACATGCTATGGCACCCCCTGCTTATCCATATCCAGATCCTTATTACAGAAGCATCTTCACTCCCTATGATGCTCAACCATATCCTCCACAGCCCTATGGTGGGCAACCGATGGTCCATCTTCAATTAATGGGAATTCAGCAAGCTGGGGTTCCTTTGCCAACAGATGCAGTTGAGGAGCCTGTTTTTGTCAATGCTAAACAGTATCATGGCATTTTACGACGTCGACAGTCCCGCGCAAAAGCTGAATCCGAAAATAAAGCCCTAAAGTCTAGGAAGCCATATTTGCATGAATCTCGACATCTGCATGCATTAAGGAGAGCTAGAGGTTGTGGTGGACGGTTTCTCAAGTCAAATAAAAATGAGAATCATCAAAATGAAGTGGCATCAGCACATCTCAACAATTGTAAGGAAATTGAGGTCCCAATACCAGCTTCAGTTGTCTTAATTGGCACAGTACATAGTAACGCTGATGTTGCTGAAACTTTTATGGGAAGCTTTGTAATGGAAGGAGATGGAGTCGACAAGAGGAAACTACCTGACCATCCTTTTTTTCTCAAGAAACCTGAACATCTTTTGGGACTGGATCTAAGTGTTGACAGTTTTCTCTTATTTGCTTGTTCCTGCATTGAAGTAGCAGAAGAAGAAATGAGATTCTGTGGAGTCCCTATCAAAGGGCCATTCCTTGGAAATCAAACACTTTCTTTTGCTCATGGTCCTCTCCTGGTCAAGCCACTCTAA 948 42.93 MMACPNQVSFGVHCNPMTSSIHDYSDNGEADEQQKYSGSQNHSSSIVNGLSQPTIATPNQYVTSPQVGAGHAMAPPAYPYPDPYYRSIFTPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKALKSRKPYLHESRHLHALRRARGCGGRFLKSNKNENHQNEVASAHLNNCKEIEVPIPASVVLIGTVHSNADVAETFMGSFVMEGDGVDKRKLPDHPFFLKKPEHLLGLDLSVDSFLLFACSCIEVAEEEMRFCGVPIKGPFLGNQTLSFAHGPLLVKPL 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 38430715 38437201 - CrPI670011_04g021180.1 Cre04g2118 496422

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g2118 315 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 129 184 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre04g2118 315 Gene3D - 127 188 - -
Cre04g2118 315 ProSiteProfiles NF-YA/HAP2 family profile. 127 187 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre04g2118 315 MobiDBLite consensus disorder prediction 31 52 - -
Cre04g2118 315 ProSitePatterns NF-YA/HAP2 subunit signature. 132 152 IPR018362 GO:0003677(InterPro)|GO:0016602(InterPro)
Cre04g2118 315 PRINTS CCAAT-binding transcription factor subunit B signature 130 152 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre04g2118 315 PRINTS CCAAT-binding transcription factor subunit B signature 161 184 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre04g2118 315 SMART cbf3 126 187 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre04g2118 315 MobiDBLite consensus disorder prediction 23 52 - -
Cre04g2118 315 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 25 196 IPR001289 GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g2118 K08064 - - csv:101205549 317.775
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2617 Cre-Chr2:39436827 Cre04g2118 Cre-Chr4:38430715 5.80E-27 dispersed
Cre04g2118 Cre-Chr4:38430715 Cre11g0654 Cre-Chr11:3645760 5.40E-26 dispersed
Cre04g2118 Cre-Chr4:38430715 Cre09g0391 Cre-Chr9:3845871 1.50E-28 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre02g2617 . 167 420 CCAAT-HAP2 Transcription Factor Family AT5G12840 51.2 9.1e-54 207.6
Cre03g1600 . 58 231 CCAAT-HAP2 Transcription Factor Family AT3G20910 61.4 5.9e-46 181.8
Cre04g2118 . 17 193 CCAAT-HAP2 Transcription Factor Family AT1G30500 58.2 1.3e-46 183.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004501 2 1 2 2 2 1 2 1 1 1 1 2 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53559 PF02045 CBFB_NFYA 8.70E-26 No_clan Cre TF