Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g2119 ATGAATAATCGCACACTGGAACTTGGGAGGCCTGGCTCAGGCAAAAGAAGATTAAGGGACCTATTGCTTCTAAAGGATAATCGCTTTTGTGCAGATTGTCGCGCTGCAGATCCTAAATGGGCGTCAGCAAATATTGGAGTTTTTATATGCTTGAAATGTTGTGGTGTTCACAGAAGCCTCGGTTCACATATATCAAAGGTGTTATCAGTGACGTTGGATGAATGGAATGATGATGAAATTGACGCCATGATAGAAGTTGGAGGAAATTCTTCTGCAAATGCTATTTATGAAGCCTTTATTCCTGAGGGATATTCAAAACCTGGACCAGATGCTACCCATGAACAACGTTCAAAATTTATTCGGTCCAAATATGAACTTCAAGAATTTCTGAAACCGAGCTTGAGAATTTTATCATCCAACTCTGACAAAAGCAATATCCAAGCAAGCTTTTCTTCAAAGATCATGAACAGTTTTCGTTCAAATCCTTCACAAAAATCACAATCGCAGGAAGGTATGGTAGAGTATATTGGATTATTGAAGGTCAAAGTTATTAAAGGAACAAACTTAGCTATCAGGGATATGATGTCTAGCGATCCTTATGTAGTCATGACTCTTGGACAACAGACTGTCCAGACAAGTGTAGTCAGGAGCAACTTGAATCCTGTGTGGAATGAGGAACTGACGCTATCTGTACCTCAAGGTTTTGGAACCATAAAGTTGCAAGTATACGATTATGACACATTTTCAGCAGACGACATAATGGGAGAAGCAGAGATTGATCTCCAGCCCTTGATAACATCCGCCATGGCATTTGGAGATGCTGGAATGTTTTCAAACATGCAAATTGGAAAATGGCTGAAATCGCATGATAACGCTCTCATAGCCGATAGCACCGTTAATATTGTCGATGGGAAGGTGAAGCAAGAGATATCACTCAAGCTTCAGAATGTGGAATCAGGAGAACTAGATCTAGAGCTTGAATGGATGGCTCTTGAACAATAG 1002 40.32 MNNRTLELGRPGSGKRRLRDLLLLKDNRFCADCRAADPKWASANIGVFICLKCCGVHRSLGSHISKVLSVTLDEWNDDEIDAMIEVGGNSSANAIYEAFIPEGYSKPGPDATHEQRSKFIRSKYELQEFLKPSLRILSSNSDKSNIQASFSSKIMNSFRSNPSQKSQSQEGMVEYIGLLKVKVIKGTNLAIRDMMSSDPYVVMTLGQQTVQTSVVRSNLNPVWNEELTLSVPQGFGTIKLQVYDYDTFSADDIMGEAEIDLQPLITSAMAFGDAGMFSNMQIGKWLKSHDNALIADSTVNIVDGKVKQEISLKLQNVESGELDLELEWMALEQ 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 38444297 38448056 + CrPI670011_04g021190.1 Cre04g2119 496423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g2119 333 PRINTS HIV Rev interacting protein signature 67 88 IPR001164 GO:0005096(InterPro)
Cre04g2119 333 PRINTS HIV Rev interacting protein signature 46 63 IPR001164 GO:0005096(InterPro)
Cre04g2119 333 PRINTS HIV Rev interacting protein signature 27 46 IPR001164 GO:0005096(InterPro)
Cre04g2119 333 Gene3D Arf GTPase activating protein 6 135 IPR038508 -
Cre04g2119 333 ProSiteProfiles C2 domain profile. 159 274 IPR000008 -
Cre04g2119 333 SMART arf_gap_3 15 137 IPR001164 GO:0005096(InterPro)
Cre04g2119 333 Pfam Putative GTPase activating protein for Arf 16 131 IPR001164 GO:0005096(InterPro)
Cre04g2119 333 ProSiteProfiles ARF GTPase-activating proteins domain profile. 15 143 IPR001164 GO:0005096(InterPro)
Cre04g2119 333 SMART C2_3c 178 273 IPR000008 -
Cre04g2119 333 CDD ArfGap 27 124 - -
Cre04g2119 333 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 2 333 IPR044518 GO:0005096(InterPro)|GO:0005543(InterPro)
Cre04g2119 333 SUPERFAMILY ArfGap/RecO-like zinc finger 15 132 IPR037278 -
Cre04g2119 333 FunFam ADP-ribosylation factor GTPase-activating protein AGD12 175 333 - -
Cre04g2119 333 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 177 321 IPR035892 -
Cre04g2119 333 FunFam Arf-GAP with dual PH domain-containing protein 1 10 138 - -
Cre04g2119 333 CDD C2_ArfGAP 176 320 - -
Cre04g2119 333 Gene3D C2 domain 174 333 IPR035892 -
Cre04g2119 333 Pfam C2 domain 177 265 IPR000008 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g2119 Cre-Chr4:38444297 Cre06g2297 Cre-Chr6:30918642 8.80E-35 dispersed
Cre01g1373 Cre-Chr1:26915925 Cre04g2119 Cre-Chr4:38444297 2.40E-23 transposed
Cre05g2840 Cre-Chr5:39042782 Cre04g2119 Cre-Chr4:38444297 5.70E-88 transposed
Cre09g1758 Cre-Chr9:35942877 Cre04g2119 Cre-Chr4:38444297 2.90E-92 transposed
Cre11g2243 Cre-Chr11:34193952 Cre04g2119 Cre-Chr4:38444297 1.70E-24 transposed
Cre03g1100 Cre-Chr3:10416310 Cre04g2119 Cre-Chr4:38444297 1.00E-139 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g2119 K12486 - csv:101218116 639.032