Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g2125 ATGCCCCATATAACTTTAGTTCATCAAAATAATAATGGTCACTCGAGTTTTCTTTCTCACGTACCTTCCCTAACTTGTTCCATTAGATTGGCAATGACATCAAATTCTAGTTCACTTCAAGATTTTTGTGTTGCAGATCCAAATAATCCTTTGAAATTGAATGGTGTAGTTTGCAAGGACCCCAAACTTGTAGAAGCCAAGGACTTCTTCTCGAGTGGGTTGCATGTACCGACCAGTATTGTACAAATCCCAGGACTCAACACTCTTGGCATCTCTCTTGCTCACCTTGACTTTGTCCCAAACAACATCGTTACTCCTTACACTCACCCTCATGCTGAAGGGGTTGGCAACCCAATAGCGAAAAGGAAATCAAAGCGAGTAAAAATCAAGCTCCCCAAAGAAGCAAAGGAAGAAAATCACAAAACGATCAATAACAACAACGAGGATGAACGAGAGGAGAATTTGGAAGATGAGGGAGGCTCGACACGAATAAAACAACGAGAAGTTATTTATGGATCTCATCTAGTACAAGGCAAAATGAATCATGGAATGGAAGACTATATCATTACCGAAGAACGACATGTCGACGACCACATGCTGGGACTATTTGCAATATTTGATGGCCACTCCGGTCGCGATGTCACAGAGTACTTGCAGAGCCATCTGTTTGATAACATCCTAAGCCAGGAGATTTTAGCTAAAAAAGTGGGAAAGAGAGGAGGTTCAACAGCAGTTACAGCTATACTAATAGATGGGCAAAAGCTAATCGTCGCACACGTAGGCGACTCACGGGCGGTGATATGCAGGAATGGCTCAGCAAAACCGATTACAGTCGATCACGAACCAGAGGAGGAGAAGGAGCTTGTTGAGAGCCGAGGCGGATTTGTTGTACAAGTGCCAGGAAGTGTGCCACGGGTGGATGGTCAGCTAGCAATGTCAAGGGCATTTGGTGATGCAAGGCTGAAAGAACACATTACTTCAGAACCAGATATCAGGATTCTCACAATTGACAATGAGACTGAGTTCACCATTTTGGCCAGTGATGGCCTCTGGAAGGTAATGTCAAACCAGGAGGCTTGTGATTGCATCAGAGAAATGGGAATGGATCCTCAAAAGGCTTCAGAGGAATTGATTAAAGAGGCATTGTCTAAAATGAGCTACGATGACATTTCCTGCGTTGTAGTTACCTTCCACTGA 1197 43.69 MPHITLVHQNNNGHSSFLSHVPSLTCSIRLAMTSNSSSLQDFCVADPNNPLKLNGVVCKDPKLVEAKDFFSSGLHVPTSIVQIPGLNTLGISLAHLDFVPNNIVTPYTHPHAEGVGNPIAKRKSKRVKIKLPKEAKEENHKTINNNNEDEREENLEDEGGSTRIKQREVIYGSHLVQGKMNHGMEDYIITEERHVDDHMLGLFAIFDGHSGRDVTEYLQSHLFDNILSQEILAKKVGKRGGSTAVTAILIDGQKLIVAHVGDSRAVICRNGSAKPITVDHEPEEEKELVESRGGFVVQVPGSVPRVDGQLAMSRAFGDARLKEHITSEPDIRILTIDNETEFTILASDGLWKVMSNQEACDCIREMGMDPQKASEELIKEALSKMSYDDISCVVVTFH 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 38493547 38497563 - CrPI670011_04g021250.1 Cre04g2125 496429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g2125 398 Gene3D - 161 398 IPR036457 -
Cre04g2125 398 ProSiteProfiles PPM-type phosphatase domain profile. 170 397 IPR001932 -
Cre04g2125 398 CDD PP2Cc 169 397 IPR001932 -
Cre04g2125 398 PANTHER PROTEIN PHOSPHATASE 148 395 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cre04g2125 398 SMART PP2C_4 166 395 IPR001932 -
Cre04g2125 398 Pfam Protein phosphatase 2C 238 389 IPR001932 -
Cre04g2125 398 Gene3D Jelly Rolls 34 120 IPR014710 -
Cre04g2125 398 SUPERFAMILY RmlC-like cupins 36 114 IPR011051 -
Cre04g2125 398 Coils Coil 133 153 - -
Cre04g2125 398 MobiDBLite consensus disorder prediction 132 149 - -
Cre04g2125 398 SUPERFAMILY PP2C-like 168 398 IPR036457 -
Cre04g2125 398 MobiDBLite consensus disorder prediction 132 161 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g2125 Cre-Chr4:38493547 Cre07g0608 Cre-Chr7:3891444 8.80E-74 dispersed
Cre04g2125 Cre-Chr4:38493547 Cre04g2127 Cre-Chr4:38504311 2.20E-16 proximal
Cre03g1113 Cre-Chr3:10749102 Cre04g2125 Cre-Chr4:38493547 1.40E-17 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g2125 K14803 - csv:101211141 424.476