Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g2145 ATGTTGTTGTTGTTTGAGATGGAGAATTATGAAGAAGGTGATTTGACTGATATTGTGAGAGGAGGAAGATCAAGATCAAGATCAACAACAAGAAGCTCCACTTCTAATTGCAAAACGGAATTGGGTGATCAAGATGAAGATCAAGATTCTCCCTTTTATTCTTCATCACAAGATAACAATTACAATCCTCAGTGGAGTAGCTCCCAATTTTCATCACAACTACTACTACTACAAGATCATCATCATCATCATCATCATCAATACAGTTTTGGGGATCCATTTTGTAGTACTGTTGCTGCTTCACTTGATCTTCATCAAGAGCTGGATAATACTAATAATAATACTTTTTTCAATGGAATTACTACTACTACTACTACTACTTCTACTCCTACTCAAGATGAGCTTATCAAAACGCCTTCTTCTTCCAATATTTTCTCACGTATGCTTCAGATCTCTCCTTCACCCGACAAATTCCCAACCATTTCTTCACTTAATTCCTCTTCTAATTTCCTAATTCCCAATCATTCTCTTAATTCTCCCACCACTCCACATTCTGATCACCTTCATCATTTTCTTCATCATAATGATAATAATCCCTCCCCCTCCGCCCTTCACATCTCTTCTCCTCGCAATCCACCCGGTATCAAGCGAAGGAAGAGCCAAGCAAGGAAAGTGGTTTGTGTTCCAGCTCCAGTGGCTGCTAGTAGTAGACCAAATGGGGAAGTTATTCCTTCTGATCTGTGGGCTTGGAGGAAATATGGTCAGAAACCCATTAAAGGCTCTCCATATCCTAGGGGGTACTATAGATGCAGCAGCTCAAAGGGATGTTCAGCAAGAAAACAAGTGGAGAGAAGTAGAACAGATCCAAACATGCTGGTGATTACTTACACATCTGAGCATAACCATCCATGGCCAACTCAAAGAAATGCTCTTGCTGGTTCTTCAAGGTCCCAACAATCCAAAAACAACAACATTACTACCACTACTTCCTCAACTTCAACAACACCAACACCCAATTCTTCAAAACTCTCTCAAGATCATCATCACACAAATAAGGAAGAAAAAGAAGAACATCAAGATCAAAACAATGGAACATTATTATCAGCTGCAGCAGCAACAACATCAAATAACAATAATAATGTTAAGGAAGAGGAAACTGAGAATCATCATCATCAATCGATGATGAGTGAAGGGTTTGATGAAGATCATGATTTCTTTGCAGATTTGGAAGAATTACAAACAGACCCTTTAACTCTGTTGTTCACTACACAACAACCCCTTAAATTAGACCAAATCAAAGAATCAGCCACCACCACCACCCCCACTATTGCTACTGGCTGCTTACACGACGTCGTTCCATTCAATAATCTCTTTGATTGGCCACCACCTCCTCTAAACAACAATTCAACTCCATTTCATGAACAACCACCACCTACTACTCCTACCAACAGAGGTTTTTATTAA 1464 39.41 MLLLFEMENYEEGDLTDIVRGGRSRSRSTTRSSTSNCKTELGDQDEDQDSPFYSSSQDNNYNPQWSSSQFSSQLLLLQDHHHHHHHQYSFGDPFCSTVAASLDLHQELDNTNNNTFFNGITTTTTTTSTPTQDELIKTPSSSNIFSRMLQISPSPDKFPTISSLNSSSNFLIPNHSLNSPTTPHSDHLHHFLHHNDNNPSPSALHISSPRNPPGIKRRKSQARKVVCVPAPVAASSRPNGEVIPSDLWAWRKYGQKPIKGSPYPRGYYRCSSSKGCSARKQVERSRTDPNMLVITYTSEHNHPWPTQRNALAGSSRSQQSKNNNITTTTSSTSTTPTPNSSKLSQDHHHTNKEEKEEHQDQNNGTLLSAAAATTSNNNNNVKEEETENHHHQSMMSEGFDEDHDFFADLEELQTDPLTLLFTTQQPLKLDQIKESATTTTPTIATGCLHDVVPFNNLFDWPPPPLNNNSTPFHEQPPPTTPTNRGFY 487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 38593984 38597087 - CrPI670011_04g021450.1 Cre04g2145 496449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g2145 487 MobiDBLite consensus disorder prediction 20 59 - -
Cre04g2145 487 MobiDBLite consensus disorder prediction 374 396 - -
Cre04g2145 487 MobiDBLite consensus disorder prediction 345 361 - -
Cre04g2145 487 MobiDBLite consensus disorder prediction 181 222 - -
Cre04g2145 487 Gene3D WRKY domain 218 298 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre04g2145 487 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 13 414 IPR044810 GO:0000976(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cre04g2145 487 SUPERFAMILY WRKY DNA-binding domain 243 305 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre04g2145 487 MobiDBLite consensus disorder prediction 22 39 - -
Cre04g2145 487 MobiDBLite consensus disorder prediction 288 344 - -
Cre04g2145 487 Pfam WRKY DNA -binding domain 246 303 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre04g2145 487 ProSiteProfiles WRKY domain profile. 239 305 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre04g2145 487 MobiDBLite consensus disorder prediction 261 362 - -
Cre04g2145 487 MobiDBLite consensus disorder prediction 466 487 - -
Cre04g2145 487 SMART WRKY_cls 244 304 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre04g2145 487 MobiDBLite consensus disorder prediction 382 396 - -
Cre04g2145 487 FunFam probable WRKY transcription factor 14 218 298 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0827 Cre-Chr1:9563380 Cre04g2145 Cre-Chr4:38593984 4.30E-23 dispersed
Cre03g1149 Cre-Chr3:11615104 Cre04g2145 Cre-Chr4:38593984 8.80E-53 dispersed
Cre04g2145 Cre-Chr4:38593984 Cre09g2417 Cre-Chr9:43577724 5.40E-33 dispersed
Cre04g2145 Cre-Chr4:38593984 Cre05g0206 Cre-Chr5:2000037 1.50E-38 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53560 PF03106 WRKY 2.80E-25 CL0274 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g2145 - - - 0.0