Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre04g2145 | ATGTTGTTGTTGTTTGAGATGGAGAATTATGAAGAAGGTGATTTGACTGATATTGTGAGAGGAGGAAGATCAAGATCAAGATCAACAACAAGAAGCTCCACTTCTAATTGCAAAACGGAATTGGGTGATCAAGATGAAGATCAAGATTCTCCCTTTTATTCTTCATCACAAGATAACAATTACAATCCTCAGTGGAGTAGCTCCCAATTTTCATCACAACTACTACTACTACAAGATCATCATCATCATCATCATCATCAATACAGTTTTGGGGATCCATTTTGTAGTACTGTTGCTGCTTCACTTGATCTTCATCAAGAGCTGGATAATACTAATAATAATACTTTTTTCAATGGAATTACTACTACTACTACTACTACTTCTACTCCTACTCAAGATGAGCTTATCAAAACGCCTTCTTCTTCCAATATTTTCTCACGTATGCTTCAGATCTCTCCTTCACCCGACAAATTCCCAACCATTTCTTCACTTAATTCCTCTTCTAATTTCCTAATTCCCAATCATTCTCTTAATTCTCCCACCACTCCACATTCTGATCACCTTCATCATTTTCTTCATCATAATGATAATAATCCCTCCCCCTCCGCCCTTCACATCTCTTCTCCTCGCAATCCACCCGGTATCAAGCGAAGGAAGAGCCAAGCAAGGAAAGTGGTTTGTGTTCCAGCTCCAGTGGCTGCTAGTAGTAGACCAAATGGGGAAGTTATTCCTTCTGATCTGTGGGCTTGGAGGAAATATGGTCAGAAACCCATTAAAGGCTCTCCATATCCTAGGGGGTACTATAGATGCAGCAGCTCAAAGGGATGTTCAGCAAGAAAACAAGTGGAGAGAAGTAGAACAGATCCAAACATGCTGGTGATTACTTACACATCTGAGCATAACCATCCATGGCCAACTCAAAGAAATGCTCTTGCTGGTTCTTCAAGGTCCCAACAATCCAAAAACAACAACATTACTACCACTACTTCCTCAACTTCAACAACACCAACACCCAATTCTTCAAAACTCTCTCAAGATCATCATCACACAAATAAGGAAGAAAAAGAAGAACATCAAGATCAAAACAATGGAACATTATTATCAGCTGCAGCAGCAACAACATCAAATAACAATAATAATGTTAAGGAAGAGGAAACTGAGAATCATCATCATCAATCGATGATGAGTGAAGGGTTTGATGAAGATCATGATTTCTTTGCAGATTTGGAAGAATTACAAACAGACCCTTTAACTCTGTTGTTCACTACACAACAACCCCTTAAATTAGACCAAATCAAAGAATCAGCCACCACCACCACCCCCACTATTGCTACTGGCTGCTTACACGACGTCGTTCCATTCAATAATCTCTTTGATTGGCCACCACCTCCTCTAAACAACAATTCAACTCCATTTCATGAACAACCACCACCTACTACTCCTACCAACAGAGGTTTTTATTAA | 1464 | 39.41 | MLLLFEMENYEEGDLTDIVRGGRSRSRSTTRSSTSNCKTELGDQDEDQDSPFYSSSQDNNYNPQWSSSQFSSQLLLLQDHHHHHHHQYSFGDPFCSTVAASLDLHQELDNTNNNTFFNGITTTTTTTSTPTQDELIKTPSSSNIFSRMLQISPSPDKFPTISSLNSSSNFLIPNHSLNSPTTPHSDHLHHFLHHNDNNPSPSALHISSPRNPPGIKRRKSQARKVVCVPAPVAASSRPNGEVIPSDLWAWRKYGQKPIKGSPYPRGYYRCSSSKGCSARKQVERSRTDPNMLVITYTSEHNHPWPTQRNALAGSSRSQQSKNNNITTTTSSTSTTPTPNSSKLSQDHHHTNKEEKEEHQDQNNGTLLSAAAATTSNNNNNVKEEETENHHHQSMMSEGFDEDHDFFADLEELQTDPLTLLFTTQQPLKLDQIKESATTTTPTIATGCLHDVVPFNNLFDWPPPPLNNNSTPFHEQPPPTTPTNRGFY | 487 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 38593984 | 38597087 | - | CrPI670011_04g021450.1 | Cre04g2145 | 496449 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre04g2145 | 487 | MobiDBLite | consensus disorder prediction | 20 | 59 | - | - | |
Cre04g2145 | 487 | MobiDBLite | consensus disorder prediction | 374 | 396 | - | - | |
Cre04g2145 | 487 | MobiDBLite | consensus disorder prediction | 345 | 361 | - | - | |
Cre04g2145 | 487 | MobiDBLite | consensus disorder prediction | 181 | 222 | - | - | |
Cre04g2145 | 487 | Gene3D | WRKY domain | 218 | 298 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cre04g2145 | 487 | PANTHER | WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED | 13 | 414 | IPR044810 | GO:0000976(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
Cre04g2145 | 487 | SUPERFAMILY | WRKY DNA-binding domain | 243 | 305 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cre04g2145 | 487 | MobiDBLite | consensus disorder prediction | 22 | 39 | - | - | |
Cre04g2145 | 487 | MobiDBLite | consensus disorder prediction | 288 | 344 | - | - | |
Cre04g2145 | 487 | Pfam | WRKY DNA -binding domain | 246 | 303 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cre04g2145 | 487 | ProSiteProfiles | WRKY domain profile. | 239 | 305 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cre04g2145 | 487 | MobiDBLite | consensus disorder prediction | 261 | 362 | - | - | |
Cre04g2145 | 487 | MobiDBLite | consensus disorder prediction | 466 | 487 | - | - | |
Cre04g2145 | 487 | SMART | WRKY_cls | 244 | 304 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cre04g2145 | 487 | MobiDBLite | consensus disorder prediction | 382 | 396 | - | - | |
Cre04g2145 | 487 | FunFam | probable WRKY transcription factor 14 | 218 | 298 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre01g0827 | Cre-Chr1:9563380 | Cre04g2145 | Cre-Chr4:38593984 | 4.30E-23 | dispersed | |
Cre03g1149 | Cre-Chr3:11615104 | Cre04g2145 | Cre-Chr4:38593984 | 8.80E-53 | dispersed | |
Cre04g2145 | Cre-Chr4:38593984 | Cre09g2417 | Cre-Chr9:43577724 | 5.40E-33 | dispersed | |
Cre04g2145 | Cre-Chr4:38593984 | Cre05g0206 | Cre-Chr5:2000037 | 1.50E-38 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
53560 | PF03106 | WRKY | 2.80E-25 | CL0274 | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre04g2145 | - | - | - | 0.0 |