Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre04g2147 | ATGTTAAAAGAAAAAAAAAACAAAAGCCCTTTCCGGAGTCGACGTGGTCGCACGTCGCCGGCTGCAACCGGTAATGGACACGTGTCGGTAGCCTTTGATTGTATCGTCTACGCTATTCAACTCCGACGAGCCGGTGGCAGTTTCCGAAAAAGATCAACTACTGCCAACCAATACACCGACGAAAACTACTTCCCGAACAGACACCCGGCTTCAGCTTCCGATCGTGAACACGGCTCTTTTGTTCGTCTTCTTCACCCAGCAAGGAGTTGGTTTCAGAAGTTCCAAAATAGAGTAAAGAAGGAAACTGTGAGTGACAATGAGGTTCAAGATGTACCCTCAAGTGCGACGAAGCAGAAAGTTGAGGTTGCTAAGCAATATATCGAAAACCATTACAAATCTCAAATGAAGTCATTGCAAGATAGGAAGGAGAGACGTTGGGTGTTGGAGAGAAGGCTTGCTGATGCTGATGTTTCTGAGGAAGACCAAATAAACGTTCTTAAATATTTAGAACAGAAGGAGACAGAATACATGCGCCTTCGTAGACATAAAATGGGCGTTGATGACTTTGAACTTTTGACAATTATTGGAAGGGGTGCATTTGGGGAGGTTAGACTTTGTAGAGAAAAAGCCACAGGTCACGTGTATGCAATGAAGAAGCTTAAGAAATCTGAGATGCTTCGCAGGGGGCAGGTGGAACATGTTAAAGCTGAAAGAAATCTTTTAGCAGAGGTTGACAGTGCCTACATTGTGAAGTTATACTGCTCCTTTCAGGATGATGATTTTTTGTATCTTATAATGCAATATCTTCCTGGAGGTGATATGATGACCCTGTTAATGCGCAAGGATATTTTGACGGAGGATGAGGCCAGATTTTATGTTGGGGAAACAGTCCTTGCTATAGAGTCCATCCACAAGCATAATTACATTCACAGAGACATCAAGCCTGATAATTTACTGCTTGATCGTTATGGCCACATTAAACTCTCAGATTTTGGGTTGTGTAAACCCTTGGAGTCTAGTAGTTTCCCTAATCTCACTGAGGAAGAAAAAGTAGTGGGGAAGAATGTCAGATCTTCCACCGAAAATGATAGTCAAATTAGTGCATCGAAACGGACACAACAAGAACAATTGTTACATTGGCAAAAGAACAGACGGACATTGGCTTATTCAGCTGTTGGAACGCCGGACTATATTGCCCCAGAAGTTTTATTGAGGAAAGGATATGGAATGGAGTGCGACTGGTGGTCCCTTGGTGCAATTATGTACGAAATGCTTGTGGGATTCCCACCTTTCTATTCTGATGATCCAATGTCTACATGTAGAAAGATTATTAACTGGAGAACTCATTTGAGATTCCCAACAGAAGCAAAACTGTCCATCGAGGCCAAAGATCTTATTTGCAAACTTCTATGCAATGTTGAGCAAAGGATTGGAACCAAAGGAGCTAAAGAAATTAAGGCGCATCCATGGTTTAAAGGTACACAATGGGATAAATTATATCAAATGGAAGCTGTTATCATTCCAGAGATTCAGGATGAGTTAGACACTCGAAATTTTGAGAAGTATGAAGAGCTGGGTGTGCCAGGTCAAACTCCATCAAAGTCGGGCCCTTTGAGAAAGAAGCTTTCACCCAAGGATGTGAACTTTGTTGGTTATACGTACAAGAATTTCGAAATTGTCAACGAACACCACTTGTCAGGCATTACTGAGATGAGGAAAAAGCCTATTAAGACCAAGAGACCATCTGTTACGACTCTATTTGGTACATTCACCGTTCTAAAATTTCTGACTAATGCAAGTTGCTGGTTTCCATTACATATACTTACCTTCTGGCCTCTCTGTTTGGCTCTCTCTTTCCTTTCCTTAGCCACAGCAGATTCTTCGGAGCAGACTGTTCAAAGAAGTTATCCTAATCATTTGCCAACCCATCCCGAAGTCTCAGAAAGCCCCGATCCATCACCTCGTTCAACTGGATCACTGCAACAGCCGAAACGATTCTGCAATCTTTATTCACAATCACAGATTCTCACCCGGCTAGTTAGCCTTCTTGTGGTGGAAGAAGGTTTCCAAATGCTGTTAGATGGCCATGAGTCTAAAGCTTCTCACAGCCAGGATCCAGCACAACTTTAA | 2130 | 42.49 | MLKEKKNKSPFRSRRGRTSPAATGNGHVSVAFDCIVYAIQLRRAGGSFRKRSTTANQYTDENYFPNRHPASASDREHGSFVRLLHPARSWFQKFQNRVKKETVSDNEVQDVPSSATKQKVEVAKQYIENHYKSQMKSLQDRKERRWVLERRLADADVSEEDQINVLKYLEQKETEYMRLRRHKMGVDDFELLTIIGRGAFGEVRLCREKATGHVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSAYIVKLYCSFQDDDFLYLIMQYLPGGDMMTLLMRKDILTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDRYGHIKLSDFGLCKPLESSSFPNLTEEEKVVGKNVRSSTENDSQISASKRTQQEQLLHWQKNRRTLAYSAVGTPDYIAPEVLLRKGYGMECDWWSLGAIMYEMLVGFPPFYSDDPMSTCRKIINWRTHLRFPTEAKLSIEAKDLICKLLCNVEQRIGTKGAKEIKAHPWFKGTQWDKLYQMEAVIIPEIQDELDTRNFEKYEELGVPGQTPSKSGPLRKKLSPKDVNFVGYTYKNFEIVNEHHLSGITEMRKKPIKTKRPSVTTLFGTFTVLKFLTNASCWFPLHILTFWPLCLALSFLSLATADSSEQTVQRSYPNHLPTHPEVSESPDPSPRSTGSLQQPKRFCNLYSQSQILTRLVSLLVVEEGFQMLLDGHESKASHSQDPAQL | 709 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 38609801 | 38618981 | - | CrPI670011_04g021470.1 | Cre04g2147 | 496451 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre04g2147 | 709 | PANTHER | SERINE/THREONINE-PROTEIN KINASE | 96 | 559 | IPR050236 | GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER) | |
Cre04g2147 | 709 | CDD | STKc_NDR_like | 187 | 555 | - | - | |
Cre04g2147 | 709 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
Cre04g2147 | 709 | SMART | pkinase_C_6 | 492 | 556 | IPR000961 | GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cre04g2147 | 709 | FunFam | Non-specific serine/threonine protein kinase | 390 | 509 | - | - | |
Cre04g2147 | 709 | MobiDBLite | consensus disorder prediction | 632 | 660 | - | - | |
Cre04g2147 | 709 | CDD | MobB_NDR_LATS-like | 123 | 184 | - | - | |
Cre04g2147 | 709 | ProSiteProfiles | Protein kinase domain profile. | 189 | 491 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cre04g2147 | 709 | Pfam | Protein kinase domain | 388 | 491 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cre04g2147 | 709 | Pfam | Protein kinase domain | 190 | 342 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cre04g2147 | 709 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 308 | 320 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cre04g2147 | 709 | Gene3D | Transferase(Phosphotransferase) domain 1 | 275 | 508 | - | - | |
Cre04g2147 | 709 | ProSitePatterns | Protein kinases ATP-binding region signature. | 195 | 218 | IPR017441 | GO:0005524(InterPro) | |
Cre04g2147 | 709 | Pfam | Protein kinase C terminal domain | 510 | 554 | IPR017892 | GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cre04g2147 | 709 | FunFam | Non-specific serine/threonine protein kinase | 273 | 340 | - | - | |
Cre04g2147 | 709 | SMART | serkin_6 | 189 | 491 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cre04g2147 | 709 | SUPERFAMILY | Protein kinase-like (PK-like) | 170 | 538 | IPR011009 | - | |
Cre04g2147 | 709 | Gene3D | Phosphorylase Kinase; domain 1 | 180 | 274 | - | - | |
Cre04g2147 | 709 | FunFam | Non-specific serine/threonine protein kinase | 160 | 272 | - | - | |
Cre04g2147 | 709 | ProSiteProfiles | AGC-kinase C-terminal domain profile. | 492 | 564 | IPR000961 | GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre02g1197 | Cre-Chr2:11575719 | Cre04g2147 | Cre-Chr4:38609801 | 1.60E-12 | dispersed | |
Cre03g1807 | Cre-Chr3:34920700 | Cre04g2147 | Cre-Chr4:38609801 | 1.00E-178 | dispersed | |
Cre04g2147 | Cre-Chr4:38609801 | Cre06g1468 | Cre-Chr6:9225198 | 4.50E-222 | dispersed | |
Cre04g2147 | Cre-Chr4:38609801 | Cre05g1972 | Cre-Chr5:31843237 | 1.70E-181 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
64099 | PF00069 | Pkinase | 4.40E-64 | CL0016 | Cre | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre04g2147 | K08790 | - | csv:101208438 | 1045.42 |