Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g2147 ATGTTAAAAGAAAAAAAAAACAAAAGCCCTTTCCGGAGTCGACGTGGTCGCACGTCGCCGGCTGCAACCGGTAATGGACACGTGTCGGTAGCCTTTGATTGTATCGTCTACGCTATTCAACTCCGACGAGCCGGTGGCAGTTTCCGAAAAAGATCAACTACTGCCAACCAATACACCGACGAAAACTACTTCCCGAACAGACACCCGGCTTCAGCTTCCGATCGTGAACACGGCTCTTTTGTTCGTCTTCTTCACCCAGCAAGGAGTTGGTTTCAGAAGTTCCAAAATAGAGTAAAGAAGGAAACTGTGAGTGACAATGAGGTTCAAGATGTACCCTCAAGTGCGACGAAGCAGAAAGTTGAGGTTGCTAAGCAATATATCGAAAACCATTACAAATCTCAAATGAAGTCATTGCAAGATAGGAAGGAGAGACGTTGGGTGTTGGAGAGAAGGCTTGCTGATGCTGATGTTTCTGAGGAAGACCAAATAAACGTTCTTAAATATTTAGAACAGAAGGAGACAGAATACATGCGCCTTCGTAGACATAAAATGGGCGTTGATGACTTTGAACTTTTGACAATTATTGGAAGGGGTGCATTTGGGGAGGTTAGACTTTGTAGAGAAAAAGCCACAGGTCACGTGTATGCAATGAAGAAGCTTAAGAAATCTGAGATGCTTCGCAGGGGGCAGGTGGAACATGTTAAAGCTGAAAGAAATCTTTTAGCAGAGGTTGACAGTGCCTACATTGTGAAGTTATACTGCTCCTTTCAGGATGATGATTTTTTGTATCTTATAATGCAATATCTTCCTGGAGGTGATATGATGACCCTGTTAATGCGCAAGGATATTTTGACGGAGGATGAGGCCAGATTTTATGTTGGGGAAACAGTCCTTGCTATAGAGTCCATCCACAAGCATAATTACATTCACAGAGACATCAAGCCTGATAATTTACTGCTTGATCGTTATGGCCACATTAAACTCTCAGATTTTGGGTTGTGTAAACCCTTGGAGTCTAGTAGTTTCCCTAATCTCACTGAGGAAGAAAAAGTAGTGGGGAAGAATGTCAGATCTTCCACCGAAAATGATAGTCAAATTAGTGCATCGAAACGGACACAACAAGAACAATTGTTACATTGGCAAAAGAACAGACGGACATTGGCTTATTCAGCTGTTGGAACGCCGGACTATATTGCCCCAGAAGTTTTATTGAGGAAAGGATATGGAATGGAGTGCGACTGGTGGTCCCTTGGTGCAATTATGTACGAAATGCTTGTGGGATTCCCACCTTTCTATTCTGATGATCCAATGTCTACATGTAGAAAGATTATTAACTGGAGAACTCATTTGAGATTCCCAACAGAAGCAAAACTGTCCATCGAGGCCAAAGATCTTATTTGCAAACTTCTATGCAATGTTGAGCAAAGGATTGGAACCAAAGGAGCTAAAGAAATTAAGGCGCATCCATGGTTTAAAGGTACACAATGGGATAAATTATATCAAATGGAAGCTGTTATCATTCCAGAGATTCAGGATGAGTTAGACACTCGAAATTTTGAGAAGTATGAAGAGCTGGGTGTGCCAGGTCAAACTCCATCAAAGTCGGGCCCTTTGAGAAAGAAGCTTTCACCCAAGGATGTGAACTTTGTTGGTTATACGTACAAGAATTTCGAAATTGTCAACGAACACCACTTGTCAGGCATTACTGAGATGAGGAAAAAGCCTATTAAGACCAAGAGACCATCTGTTACGACTCTATTTGGTACATTCACCGTTCTAAAATTTCTGACTAATGCAAGTTGCTGGTTTCCATTACATATACTTACCTTCTGGCCTCTCTGTTTGGCTCTCTCTTTCCTTTCCTTAGCCACAGCAGATTCTTCGGAGCAGACTGTTCAAAGAAGTTATCCTAATCATTTGCCAACCCATCCCGAAGTCTCAGAAAGCCCCGATCCATCACCTCGTTCAACTGGATCACTGCAACAGCCGAAACGATTCTGCAATCTTTATTCACAATCACAGATTCTCACCCGGCTAGTTAGCCTTCTTGTGGTGGAAGAAGGTTTCCAAATGCTGTTAGATGGCCATGAGTCTAAAGCTTCTCACAGCCAGGATCCAGCACAACTTTAA 2130 42.49 MLKEKKNKSPFRSRRGRTSPAATGNGHVSVAFDCIVYAIQLRRAGGSFRKRSTTANQYTDENYFPNRHPASASDREHGSFVRLLHPARSWFQKFQNRVKKETVSDNEVQDVPSSATKQKVEVAKQYIENHYKSQMKSLQDRKERRWVLERRLADADVSEEDQINVLKYLEQKETEYMRLRRHKMGVDDFELLTIIGRGAFGEVRLCREKATGHVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSAYIVKLYCSFQDDDFLYLIMQYLPGGDMMTLLMRKDILTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDRYGHIKLSDFGLCKPLESSSFPNLTEEEKVVGKNVRSSTENDSQISASKRTQQEQLLHWQKNRRTLAYSAVGTPDYIAPEVLLRKGYGMECDWWSLGAIMYEMLVGFPPFYSDDPMSTCRKIINWRTHLRFPTEAKLSIEAKDLICKLLCNVEQRIGTKGAKEIKAHPWFKGTQWDKLYQMEAVIIPEIQDELDTRNFEKYEELGVPGQTPSKSGPLRKKLSPKDVNFVGYTYKNFEIVNEHHLSGITEMRKKPIKTKRPSVTTLFGTFTVLKFLTNASCWFPLHILTFWPLCLALSFLSLATADSSEQTVQRSYPNHLPTHPEVSESPDPSPRSTGSLQQPKRFCNLYSQSQILTRLVSLLVVEEGFQMLLDGHESKASHSQDPAQL 709
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 38609801 38618981 - CrPI670011_04g021470.1 Cre04g2147 496451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g2147 709 PANTHER SERINE/THREONINE-PROTEIN KINASE 96 559 IPR050236 GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER)
Cre04g2147 709 CDD STKc_NDR_like 187 555 - -
Cre04g2147 709 MobiDBLite consensus disorder prediction 1 24 - -
Cre04g2147 709 SMART pkinase_C_6 492 556 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre04g2147 709 FunFam Non-specific serine/threonine protein kinase 390 509 - -
Cre04g2147 709 MobiDBLite consensus disorder prediction 632 660 - -
Cre04g2147 709 CDD MobB_NDR_LATS-like 123 184 - -
Cre04g2147 709 ProSiteProfiles Protein kinase domain profile. 189 491 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre04g2147 709 Pfam Protein kinase domain 388 491 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre04g2147 709 Pfam Protein kinase domain 190 342 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre04g2147 709 ProSitePatterns Serine/Threonine protein kinases active-site signature. 308 320 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre04g2147 709 Gene3D Transferase(Phosphotransferase) domain 1 275 508 - -
Cre04g2147 709 ProSitePatterns Protein kinases ATP-binding region signature. 195 218 IPR017441 GO:0005524(InterPro)
Cre04g2147 709 Pfam Protein kinase C terminal domain 510 554 IPR017892 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre04g2147 709 FunFam Non-specific serine/threonine protein kinase 273 340 - -
Cre04g2147 709 SMART serkin_6 189 491 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre04g2147 709 SUPERFAMILY Protein kinase-like (PK-like) 170 538 IPR011009 -
Cre04g2147 709 Gene3D Phosphorylase Kinase; domain 1 180 274 - -
Cre04g2147 709 FunFam Non-specific serine/threonine protein kinase 160 272 - -
Cre04g2147 709 ProSiteProfiles AGC-kinase C-terminal domain profile. 492 564 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1197 Cre-Chr2:11575719 Cre04g2147 Cre-Chr4:38609801 1.60E-12 dispersed
Cre03g1807 Cre-Chr3:34920700 Cre04g2147 Cre-Chr4:38609801 1.00E-178 dispersed
Cre04g2147 Cre-Chr4:38609801 Cre06g1468 Cre-Chr6:9225198 4.50E-222 dispersed
Cre04g2147 Cre-Chr4:38609801 Cre05g1972 Cre-Chr5:31843237 1.70E-181 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64099 PF00069 Pkinase 4.40E-64 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g2147 K08790 - csv:101208438 1045.42