Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g2163 ATGGGGAAGAAGAAGAAGAGAGTTTCGTCTAAGGTATGGTGCTACTATTGCGACAGAGAATTCGATGACGAGAAGATATTGGTGCAGCATCAGAAGGCTAAACACTTCAAGTGCCATGTCTGTCACAAGAAGCTTTCTACTGCCGGCGGTATGGTCATCCACGTTCTTCAGGTCCACAAAGAGTCAGTCACCAAAGTTCCTAATGCAAAACCAGGCAGAGAAGCCACAGATATCGAAATATACGGAATGCAAGGAATTCCTCCGGATGTCTTGGCAGCACACTATGGAGAGGAGGAGGAAGAGTCTTTGTCGAAGGTGGCCAAAGTGGAGATGCCATCAACTCAGATGGTTGGAGGTGTGGTGCCTGGATCACTGGGTATTGTATACCCTCCTCAGCCAGGTTTAGCTGCAATGCAACCTATTTATCCTTCGACTGGACAAGCACAGCCTACTGTCTGGCCAGTTCCACCTCGTCCCCAACCTTGGTTCCCCCCAAATTCAGCCGTTTCAATTCCTCCTCCTGCCCCATTGGGCTATGCTCAGCAGCCACTATTTCCTGTGCAGACTGCAAGGCCTCCACTTCCAGTATCATCAACTCCTATGCTCCAGCCTTTACAGATAACGCCTCCTGGATTGACGTCAACTACACCTTCAGTTTCTGTATCTCAACCGTTGTTCCCTGTTGTTAGTAATAGCCACGGACCTACCCAAAGCTCTCCTTTTTCTTCATCTACACTTTCAACAAGCATTCCTTTGACCTCGGCAGCAGATATCAAGGGCTCAGTGACACATCTGGGCACCAACTCCTTTTCTACAATTGGAAATCAAGTTTCAAACATTCCAGGTGCAATGTTAAGCAATTCACATTCCTATGCCTCGGGACCAAATACAGGTGGTCCTTCTATCGGACCACCTCCTGTAATTGCGAATAAGGCTCCTACTCAACCATCAACGAATGAAGTATATTTGGTTTGGGATGATGAGGCAATGTCTATGGAGGAAAGAAGAATGTCCTTAACTAAGTATCAGGTGCATGATGAAACTAGCCAGATGAGTTCAATTGATGCAGCCATAGACAAACGAATCTTGGAAAGCAGGCTTGCTGGCCGAATGCCATTTTAG 1122 47.06 MGKKKKRVSSKVWCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMVIHVLQVHKESVTKVPNAKPGREATDIEIYGMQGIPPDVLAAHYGEEEEESLSKVAKVEMPSTQMVGGVVPGSLGIVYPPQPGLAAMQPIYPSTGQAQPTVWPVPPRPQPWFPPNSAVSIPPPAPLGYAQQPLFPVQTARPPLPVSSTPMLQPLQITPPGLTSTTPSVSVSQPLFPVVSNSHGPTQSSPFSSSTLSTSIPLTSAADIKGSVTHLGTNSFSTIGNQVSNIPGAMLSNSHSYASGPNTGGPSIGPPPVIANKAPTQPSTNEVYLVWDDEAMSMEERRMSLTKYQVHDETSQMSSIDAAIDKRILESRLAGRMPF 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 38776692 38781582 - CrPI670011_04g021630.1 Cre04g2163 496467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g2163 373 Gene3D Classic Zinc Finger 1 66 - -
Cre04g2163 373 ProSitePatterns Zinc finger C2H2 type domain signature. 14 35 IPR013087 -
Cre04g2163 373 CDD SUF4-like 13 92 - -
Cre04g2163 373 SMART c2h2final6 12 35 IPR013087 -
Cre04g2163 373 SMART c2h2final6 36 59 IPR013087 -
Cre04g2163 373 ProSiteProfiles Zinc finger BED-type profile. 7 66 IPR003656 GO:0003677(InterPro)
Cre04g2163 373 ProSitePatterns Zinc finger C2H2 type domain signature. 38 59 IPR013087 -
Cre04g2163 373 PANTHER ZINC FINGER PROTEIN 207 1 373 - GO:0003677(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53562 None None None None Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g2163 K27810 - csv:101206973 691.034