Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cre04g2168 | ATGGCGCCGGGCCTCAGAGACCTCCAGCTCGTCCAGGTCGCCGCCGCAGACCGTCGCCCGCCGGATATTTCTGCGGCTGATGAAATTCCCGATGACCTTGAGGATGTGCGTTTGCTTGATTCCTATGAGAGGCAGGATGAGAATTTGGCCAAAATTGGGGATGGTATGAGGAGGGTTCAGGTCACAGTTTCTGGGATGACCTGCGCTGCTTGTTCTAATTCCGTGGAGGCTGCTCTGAGGGGCGTTAATGGCGTTTTGATGGCTTCTGTTGCATTGCTTCAGAACAGAGCTGACGTGGTTTTTGACCCCAACTTGATTAAGGAGGAAGACATCAAGGAAGCAATAGAAGATGCTGGATTTGAGGCTGAGATTATACCTGAAACCACTTCAGTTGGAAAGAAGTCGCATGGAACACTGGTGGGTCAATTTACCATAGGCGGTATGACATGTGCAGCATGTGTGAATTCGGTAGAAGGAATTTTAAAAGATCTTCCTGGTGTTAGAAGAGCAGTAGTTGCTTTAGCCACATCATTGGGAGAAGTTGAATATGATCCTACAATAACCAGTAAAGACGATATAGTTAACGCAATTGAGGATGCTGGATTTGAAGCTTCATTTGTACAGAGCAGCGAACAAGATAAAATTTTACTAGCAGTTGCAGGCATTGCTGGCGAGGTTGATGTACATTTTCTGGAAGTCATACTTAGCAACTTGAAAGGGGTGAAACGGTTTCTCTTTGACAGTATATCAGGAAAACTTGAAATTATTTTTGACCCAGAAGTTGTTGGTCCCAGATCCTTAGTGGATGAGATTGAGGGAAGAAGCAACAGAAAATTTAAACTGCATGTTACGAGCCCTTACACAAGGTTAACATCTAAAGATGTTGAAGAGGCTAATAACATGTTTCGGCTTTTTATCTCCAGTCTGTCTCTCAGTGTACTCATCTTTCTCCAACGAGTAATATGTCCTCATATTCCTTTAATCTACTCATTGCTACTCTGGCGCTGTGGGCCCTTCCTCATGGATGATTGGTTAAAGTGGGCATTAGTGACTGTTGTACAATTTATTATTGGAAAGCGCTTTTACATTGCAGCTGCTAGAGCTCTTCGAAATGGTTCAACAAACATGGATGTCTTGGTTGCTTTGGGTACCACGGCCTCTTACGTCTATTCTGTTTGTGCACTTCTCTATGGTGCAGTCACTGGATTTTGGTCTCCTACTTATTTTGAAACAAGTGCTATGTTAATAACCTTTGTATTATTGGGAAAGTATTTGGAGTGTCTTGCCAAGGGGAAAACATCAGATGCCATCAAGAAGTTGGTAGAACTTGCTCCTGCAACTGCTTTATTGCTTATCCGAGATAAAGGTGGGAATTTGATAGAAGAAAGGGAAATCGATGCTCTGTTAATTCAACCTGGTGATGTGTTGAAGGTTCTTCCTGGTACAAAGATTCCAGCGGATGGTGTTGTTGTTTGGGGTTCAAGTTATGTTAATGAGAGTATGGTTACTGGAGAATCTATACCTGTTTTAAAGGAGGTTAACTCGCACGTTATTGGAGGTACAATTAATTTTCATGGAGCTCTTCACATTCAAGCAACAAAAGTAGGATCTGATGCAGTTTTGAACCAGATTATTAGTTTGGTTGAGACAGCTCAGATGTCTAAAGCTCCCATTCAGAAATTTGCTGACTTTGTAGCAAGCATATTTGTTCCAACCGTCGTAGCTATGGCATTGTGTACGTTATTTGGTTGGTACGTTGGAGGAATTCTTGGGGCTTATCCTGCTGAATGGCTCCCAGAAAATGGAAATTACTTTGTATTTTCCCTTATGTTTGCCATAGCAGTGGTAGTTATTGCATGTCCTTGTGCACTAGGCTTGGCCACACCAACTGCTGTCATGGTTGCTACTGGGGTTGGTGCGAGCAATGGTGTCTTGATTAAAGGAGGAGATGCTTTGGAGAGGGCCCAAAAGGTTAAGTACGTGATTTTTGATAAAACAGGCACACTAACCCAAGGGAAAGCAACCGTTACTACCGCCAAAGTATTCACTGAAATTTCTCGAGGAGATTTTCTTAAGTTGGTTGCTTCAGCAGAGGCTAGCAGTGAACACCCATTAGGAAAAGCTATAGTTGAGTATGCACGTCATTTCCATTTCTTCGATGAGCCTTCTGCGACCAAAAATGTGGAAAATCAAAGTAAAGAATCTTCTGGATGGCTTTATGATGCCACAGATTTCTCTGCATTGCCAGGCCAAGGCATCCAGTGCATTATTGAGGGAAAAAGGATTCTGGTTGGCAACAGGAAGTTGATGAATGAAAGTGGAATCTCCATAGCACCTCATGTAGATAATTTCGTTATAGAGCTTGAAGAAAGTGCAAAGACAGGCATTCTTGTTGCATGTGATGACAACTTAATTGGAGTTGTCGGAATAGCAGATCCACTGAAGCGAGAAGCTGCAGTTGTTGTAGAGGGTCTTGTAAAAATGGGAGTTTCTCCAGTGATGGTTACAGGGGATAATTGGAGAACGGCTCGAGCTGTCGCCAAAGAGCTTGGTATACAAGATGTGAGAGCAGAAGTAATGCCAGCAGGAAAGGCAGAAGTCATTCAAAACTTCCAAAAGGATGGAAGCACAGTTGCAATGGTAGGTGATGGTATCAATGACTCGCCTGCTCTAGCTGCTTCTGATATCGGAATTGCAATCGGTGCGGGAACTGATATTGCCATTGAGGCAGCCGACTTTGTCCTGATGAGAAATAATTTAGAAGACGTAATTACAGCCATTGATCTCTCAAGGAAGACTTTCAATCGGATTCGATTAAATTACGTGTTTGCAATGGCCTACAATGTAATAGCTATTCCTATCGCTGCTGGAGTCTTCTTTCCTTCTTTGGGGGTTAAATTGCCTCCATGGGCAGCTGGTGCATGCATGGCTTTATCGTCCGTAAGTGTCGTTTGCTCTTCTTTACTTCTTAGGAGATACAAAAGACCAAGACTTACGACAATACTCGAAATAACTGTAGAATAG | 3024 | 43.09 | MAPGLRDLQLVQVAAADRRPPDISAADEIPDDLEDVRLLDSYERQDENLAKIGDGMRRVQVTVSGMTCAACSNSVEAALRGVNGVLMASVALLQNRADVVFDPNLIKEEDIKEAIEDAGFEAEIIPETTSVGKKSHGTLVGQFTIGGMTCAACVNSVEGILKDLPGVRRAVVALATSLGEVEYDPTITSKDDIVNAIEDAGFEASFVQSSEQDKILLAVAGIAGEVDVHFLEVILSNLKGVKRFLFDSISGKLEIIFDPEVVGPRSLVDEIEGRSNRKFKLHVTSPYTRLTSKDVEEANNMFRLFISSLSLSVLIFLQRVICPHIPLIYSLLLWRCGPFLMDDWLKWALVTVVQFIIGKRFYIAAARALRNGSTNMDVLVALGTTASYVYSVCALLYGAVTGFWSPTYFETSAMLITFVLLGKYLECLAKGKTSDAIKKLVELAPATALLLIRDKGGNLIEEREIDALLIQPGDVLKVLPGTKIPADGVVVWGSSYVNESMVTGESIPVLKEVNSHVIGGTINFHGALHIQATKVGSDAVLNQIISLVETAQMSKAPIQKFADFVASIFVPTVVAMALCTLFGWYVGGILGAYPAEWLPENGNYFVFSLMFAIAVVVIACPCALGLATPTAVMVATGVGASNGVLIKGGDALERAQKVKYVIFDKTGTLTQGKATVTTAKVFTEISRGDFLKLVASAEASSEHPLGKAIVEYARHFHFFDEPSATKNVENQSKESSGWLYDATDFSALPGQGIQCIIEGKRILVGNRKLMNESGISIAPHVDNFVIELEESAKTGILVACDDNLIGVVGIADPLKREAAVVVEGLVKMGVSPVMVTGDNWRTARAVAKELGIQDVRAEVMPAGKAEVIQNFQKDGSTVAMVGDGINDSPALAASDIGIAIGAGTDIAIEAADFVLMRNNLEDVITAIDLSRKTFNRIRLNYVFAMAYNVIAIPIAAGVFFPSLGVKLPPWAAGACMALSSVSVVCSSLLLRRYKRPRLTTILEITVE | 1007 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 38809297 | 38820009 | - | CrPI670011_04g021680.1 | Cre04g2168 | 496472 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cre04g2168 | 1007 | FunFam | Copper-exporting P-type ATPase A | 55 | 125 | - | - | |
| Cre04g2168 | 1007 | SUPERFAMILY | HMA, heavy metal-associated domain | 53 | 126 | IPR036163 | GO:0046872(InterPro) | |
| Cre04g2168 | 1007 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 399 | 969 | IPR023298 | - | |
| Cre04g2168 | 1007 | SUPERFAMILY | Calcium ATPase, transduction domain A | 462 | 548 | IPR008250 | - | |
| Cre04g2168 | 1007 | SUPERFAMILY | HMA, heavy metal-associated domain | 140 | 210 | IPR036163 | GO:0046872(InterPro) | |
| Cre04g2168 | 1007 | NCBIfam | heavy metal translocating P-type ATPase | 376 | 990 | IPR027256 | GO:0006812(InterPro)|GO:0016020(InterPro)|GO:0019829(InterPro) | |
| Cre04g2168 | 1007 | Gene3D | - | 141 | 206 | - | - | |
| Cre04g2168 | 1007 | Pfam | haloacid dehalogenase-like hydrolase | 658 | 894 | - | - | |
| Cre04g2168 | 1007 | NCBIfam | HAD-IC family P-type ATPase | 415 | 691 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cre04g2168 | 1007 | NCBIfam | HAD-IC family P-type ATPase | 743 | 962 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cre04g2168 | 1007 | PRINTS | P-type cation-transporting ATPase superfamily signature | 806 | 817 | - | - | |
| Cre04g2168 | 1007 | PRINTS | P-type cation-transporting ATPase superfamily signature | 904 | 916 | - | - | |
| Cre04g2168 | 1007 | PRINTS | P-type cation-transporting ATPase superfamily signature | 662 | 676 | - | - | |
| Cre04g2168 | 1007 | PRINTS | P-type cation-transporting ATPase superfamily signature | 828 | 838 | - | - | |
| Cre04g2168 | 1007 | PRINTS | P-type cation-transporting ATPase superfamily signature | 498 | 512 | - | - | |
| Cre04g2168 | 1007 | PRINTS | P-type cation-transporting ATPase superfamily signature | 881 | 900 | - | - | |
| Cre04g2168 | 1007 | ProSiteProfiles | Heavy-metal-associated domain profile. | 139 | 205 | IPR006121 | GO:0046872(InterPro) | |
| Cre04g2168 | 1007 | Gene3D | - | 629 | 938 | IPR023214 | - | |
| Cre04g2168 | 1007 | FunFam | Copper-transporting ATPase 1, putative | 430 | 552 | - | - | |
| Cre04g2168 | 1007 | Pfam | E1-E2 ATPase | 443 | 640 | - | - | |
| Cre04g2168 | 1007 | SFLD | C1.7: P-type atpase like | 644 | 933 | - | - | |
| Cre04g2168 | 1007 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 664 | 670 | IPR018303 | - | |
| Cre04g2168 | 1007 | ProSitePatterns | Heavy-metal-associated domain. | 145 | 174 | IPR017969 | GO:0046872(InterPro) | |
| Cre04g2168 | 1007 | Gene3D | - | 56 | 128 | - | - | |
| Cre04g2168 | 1007 | CDD | HMA | 142 | 205 | IPR006121 | GO:0046872(InterPro) | |
| Cre04g2168 | 1007 | ProSitePatterns | Heavy-metal-associated domain. | 63 | 93 | IPR017969 | GO:0046872(InterPro) | |
| Cre04g2168 | 1007 | FunFam | Copper-exporting P-type ATPase A | 138 | 207 | - | - | |
| Cre04g2168 | 1007 | SUPERFAMILY | HAD-like | 661 | 987 | IPR036412 | - | |
| Cre04g2168 | 1007 | CDD | P-type_ATPase_Cu-like | 303 | 977 | - | - | |
| Cre04g2168 | 1007 | SFLD | p-type atpase | 644 | 933 | IPR044492 | - | |
| Cre04g2168 | 1007 | FunFam | Probable copper-transporting ATPase HMA5 | 788 | 938 | - | - | |
| Cre04g2168 | 1007 | FunFam | Copper-exporting P-type ATPase | 761 | 812 | - | - | |
| Cre04g2168 | 1007 | Gene3D | - | 430 | 552 | - | - | |
| Cre04g2168 | 1007 | PRINTS | H+-transporting ATPase (proton pump) signature | 912 | 937 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cre04g2168 | 1007 | PRINTS | H+-transporting ATPase (proton pump) signature | 881 | 897 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cre04g2168 | 1007 | PRINTS | H+-transporting ATPase (proton pump) signature | 853 | 869 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cre04g2168 | 1007 | NCBIfam | copper ion binding protein | 59 | 122 | IPR006122 | GO:0005507(InterPro) | |
| Cre04g2168 | 1007 | NCBIfam | copper ion binding protein | 142 | 204 | IPR006122 | GO:0005507(InterPro) | |
| Cre04g2168 | 1007 | CDD | HMA | 60 | 123 | IPR006121 | GO:0046872(InterPro) | |
| Cre04g2168 | 1007 | FunFam | Copper-transporting ATPase RAN1 | 669 | 760 | - | - | |
| Cre04g2168 | 1007 | ProSiteProfiles | Heavy-metal-associated domain profile. | 57 | 123 | IPR006121 | GO:0046872(InterPro) | |
| Cre04g2168 | 1007 | Gene3D | - | 669 | 761 | IPR023299 | GO:0000166(InterPro) | |
| Cre04g2168 | 1007 | Gene3D | - | 762 | 812 | IPR023299 | GO:0000166(InterPro) | |
| Cre04g2168 | 1007 | PANTHER | P-TYPE CATION-TRANSPORTING ATPASE | 46 | 1004 | - | - | |
| Cre04g2168 | 1007 | Pfam | Heavy-metal-associated domain | 61 | 121 | IPR006121 | GO:0046872(InterPro) | |
| Cre04g2168 | 1007 | Pfam | Heavy-metal-associated domain | 143 | 203 | IPR006121 | GO:0046872(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cre04g2168 | Cre-Chr4:38809297 | Cre09g2239 | Cre-Chr9:41571191 | 7.60E-231 | dispersed | |
| Cre04g2168 | Cre-Chr4:38809297 | Cre02g1545 | Cre-Chr2:27832144 | 4.70E-188 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cre04g2168 | K17686 | - | csv:101205642 | 1843.55 |