Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g2203 ATGGTTGCAGCAGCTTCAGCTTGGCACATGAAGTTCTTCACACTTACACTTGTGCTGCTCCTCCTTCCTTGTGTATGTGTATGTGTGCACTCCCACTCACTGTCCCTCAAGGCACAAGCTTCTGTTCTGCTTTCCATCAAACACAGTTTCGATGAAGCCACTCCAATTTCGACTCTCCTGGACTGGAATGCTTCAAATTACTCAGACCTCTGCAGTTGGACTGGAATTCAATGCGATGCCATTGGCATGAAGAGATCAGTAGTGTCGCTCGACATTTCCAATTCCAACATCTCCGGGACCTTCCCCCCTCTAATTCACAAGCTAACCAAGCTTCGCTTTCTCAACATTTCCAACAATCAGTTCAGGGGGCAACTCCAGTGGGAGTATTCTCAGTTGAAACTGCTGCAGGTATTTGATGCTTATAACAACAATTTCAATGGCTCCCTCCCCACAGGCGTCCTTCAACTTCCCAGTCTAAAGCACTTAAATCTTGGCGGGAATTACTTCACCGGTCGAATCCCTCCAAGCTATGGTGATATGGGGGAGCTCACTTATCTGTCCCTTGCCGGCAATGACTTGGGCGGTCCCATTCCCCCTGAGCTCGGTAATCTTACCAATCTCCACCGCCTTTATTTGGGATACTTCAACCAGTTTGAGGGTGGGATACCGTCTCAACTCGAACAACTAGTGAATTTGAATCATCTCGACCTTGCGAGTTGTGGTTTACAAGGTCCAATCCCACCCGGGTTGGGGAATCTCAACAAGTTGGACACTCTGTTCTTGCAGACAAATCAGCTGAGCGGTTCAATTCCAACCCAGTTGGGCAACTTGAGCGCCTTGATTTCCCTTGACCTCTCCAACAACCAGTTAACGGGAGAGATCCCCCTTGAATTTGCAAACCTCCGCCAGCTTTCGCTGCTCAATTTATTCATGAACAAGTTGCATGGGGAGATTCCTAATGTTGTAGCCCATCTTCCGGGGTTGGAGGTTTTGAAGCTGTGGCAAAACAACTTCACAGGAGGCATTCCGTCAAAGCTGGGTGAGAATGGGAGGCTGAGGGAGGTGGACTTGTCCAGCAACAAGCTCACTGGGATGGTCCCGGAGCGTTTGTGCTTAGGAGGAAGGCTGAAGATCTTGATTTTACTCAACAATTTTTTGTTTGGGGGTGTGCCAGGTGATCTAGGGCGATGCCAGACGCTTGTAAGAGTTCGGATGGGTCAGAATTATTTGACGGGAACAATCCCAGATGGGCTGCTTTACTTGCCACAACTCTCCCTCATGGAATTGCAGAACAACTACCTGAGCGGACCCCTTCCACAACCACAACACATCCGCCAACTCCCCTCCAAACTAGGCCGCCTAAACCTTTCCAACAATCGCTTTTCTGGATCCCTCCCCATCTCCATCAGCAACTTCACAAACCTCCAGATTCTGCTTTTGAGTGGAAACCGTTTCTCTGGCCACATTCCTCCCCAAATTGGCAAACTGCGAAATCTTCTCAAGCTAGACATGAGCAGAAACAACTTTTCCGGTTCAATCCCTCCTGAGTTCAGCAATTGTGTCTCCCTCACTTACCTGGATTTGAGTCTCAATCACCTAACTTCTTCAATCCCAGTTCAAATCTCACAAATTCGCATCTTAAATTATCTTAACTTGTCTTGGAACCATCTCACCCACACCCTTCCCATCGAAATTGGCTCCATAAAAAGCTTGACCTCTGCCGACTTCTCCCACAACAACTTTTCCGGTCCCATACCCCAAACTGGCCAGTTTCTACTCTTCAATTCCACATCCTTTGTGGGCAACCCTCAATTGTGTGGATTCTCCTTGAATCCCTGCAAGTCTCAAACCCCAACCACCGCCAATTCGAACAAAGGTGTTGGGAAATATAAGCTGGTGTTCGCGTTGGGGCTATTGATGTGTTCAGTAATATTTGCAGCTCTGGCAATTGTTCAGACAAGGAAAGCGAAAAAGAAATCAAGTTCGTGGAAGCTAGCAGCATTCCAGAAGCTGGAATTTGGAAGTAAGGATATCACAGAGTGCATAAAAGAGAACAACATAATTGGAAAAGGAGGAGCTGGTATTGTGTACAAAGGAATCATGCCAAACGGGGAACAAGTAGCCATAAAAAAGCTGTTGGCCATAACCAAGGGCTCCTCCCACGACAACGGCCTGTCCGCCGAGATACGAACGCTGGGCAAAATCCGGCATAGGAACATCGTGAGATTGCTTGCATTTTGCTCCAATAAGCAGACGAATCTGCTGGTATACGAGTACATGCCCAATGGAAGTTTAGGAGAAGTTCTCCACGGGAAGAGGGGGGGTTCTCTAAAATGGGGAACCAGGCTGAAGATAGCCATAGAAGCCGCCAAAGGGCTTTGCTATTTGCACCATGACTGCTCCCCGCTCATAATTCATAGGGACGTCAAGTCCAACAACATTTTGCTCAACTCAGACTTCGAGGCTCATGTAGCGGACTTCGGTTTGGCCAAGTTCTTGCAAGACAATGGAACATCGGAGTGCATGTCTGCAATAGCCGGCTCTTATGGGTACATTGCTCCAGAATATGCATACACATTAAAAGTGGACGAAAAAACTGATGTTTACAGTTTCGGAGTGGTGCTGCTGGAGTTGATAACGGGGCGGAAGCCAGTTGGAAATTTTGGAGAAGATGGTTTGGACATTGTCCAGTGGGCTAGGATTCAAACCAACTCCACCAAAGAAGGTGTTGTTAAGTTATTGGATCAAAGGTTAAGTAACATACCAATTAATGAAGCAAATCATATTTTTTTCGTTGCTATGTTATGCGTTCAAGAACACAGCGTGGAGCGGCCAACAATGAAAGAAGTGGTTCAAATGCTTGCACAAGCCCATCAACCAAATACTTTCCACATGCATTGA 2901 47.19 MVAAASAWHMKFFTLTLVLLLLPCVCVCVHSHSLSLKAQASVLLSIKHSFDEATPISTLLDWNASNYSDLCSWTGIQCDAIGMKRSVVSLDISNSNISGTFPPLIHKLTKLRFLNISNNQFRGQLQWEYSQLKLLQVFDAYNNNFNGSLPTGVLQLPSLKHLNLGGNYFTGRIPPSYGDMGELTYLSLAGNDLGGPIPPELGNLTNLHRLYLGYFNQFEGGIPSQLEQLVNLNHLDLASCGLQGPIPPGLGNLNKLDTLFLQTNQLSGSIPTQLGNLSALISLDLSNNQLTGEIPLEFANLRQLSLLNLFMNKLHGEIPNVVAHLPGLEVLKLWQNNFTGGIPSKLGENGRLREVDLSSNKLTGMVPERLCLGGRLKILILLNNFLFGGVPGDLGRCQTLVRVRMGQNYLTGTIPDGLLYLPQLSLMELQNNYLSGPLPQPQHIRQLPSKLGRLNLSNNRFSGSLPISISNFTNLQILLLSGNRFSGHIPPQIGKLRNLLKLDMSRNNFSGSIPPEFSNCVSLTYLDLSLNHLTSSIPVQISQIRILNYLNLSWNHLTHTLPIEIGSIKSLTSADFSHNNFSGPIPQTGQFLLFNSTSFVGNPQLCGFSLNPCKSQTPTTANSNKGVGKYKLVFALGLLMCSVIFAALAIVQTRKAKKKSSSWKLAAFQKLEFGSKDITECIKENNIIGKGGAGIVYKGIMPNGEQVAIKKLLAITKGSSHDNGLSAEIRTLGKIRHRNIVRLLAFCSNKQTNLLVYEYMPNGSLGEVLHGKRGGSLKWGTRLKIAIEAAKGLCYLHHDCSPLIIHRDVKSNNILLNSDFEAHVADFGLAKFLQDNGTSECMSAIAGSYGYIAPEYAYTLKVDEKTDVYSFGVVLLELITGRKPVGNFGEDGLDIVQWARIQTNSTKEGVVKLLDQRLSNIPINEANHIFFVAMLCVQEHSVERPTMKEVVQMLAQAHQPNTFHMH 966
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 39133367 39137169 - CrPI670011_04g022030.1 Cre04g2203 496507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g2203 966 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 20 958 IPR050647 -
Cre04g2203 966 Gene3D Transferase(Phosphotransferase) domain 1 760 965 - -
Cre04g2203 966 Pfam Protein kinase domain 684 952 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre04g2203 966 Gene3D Phosphorylase Kinase; domain 1 646 759 - -
Cre04g2203 966 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 329 617 - -
Cre04g2203 966 SUPERFAMILY L domain-like 71 367 - -
Cre04g2203 966 Gene3D Ribonuclease Inhibitor 297 372 IPR032675 -
Cre04g2203 966 Gene3D Ribonuclease Inhibitor 196 296 IPR032675 -
Cre04g2203 966 Gene3D Ribonuclease Inhibitor 492 615 IPR032675 -
Cre04g2203 966 FunFam Leucine-rich repeat receptor-like protein kinase 36 199 - -
Cre04g2203 966 SUPERFAMILY Protein kinase-like (PK-like) 676 954 IPR011009 -
Cre04g2203 966 ProSiteProfiles Protein kinase domain profile. 682 966 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre04g2203 966 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 760 966 - -
Cre04g2203 966 ProSitePatterns Serine/Threonine protein kinases active-site signature. 804 816 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre04g2203 966 Gene3D Ribonuclease Inhibitor 443 491 IPR032675 -
Cre04g2203 966 Gene3D Ribonuclease Inhibitor 373 442 IPR032675 -
Cre04g2203 966 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 217 322 - -
Cre04g2203 966 SUPERFAMILY L domain-like 294 625 - -
Cre04g2203 966 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 651 759 - -
Cre04g2203 966 Gene3D Ribonuclease Inhibitor 36 195 IPR032675 -
Cre04g2203 966 SMART LRR_typ_2 229 253 IPR003591 -
Cre04g2203 966 SMART LRR_typ_2 180 204 IPR003591 -
Cre04g2203 966 SMART LRR_typ_2 472 495 IPR003591 -
Cre04g2203 966 SMART LRR_typ_2 496 519 IPR003591 -
Cre04g2203 966 SMART LRR_typ_2 325 349 IPR003591 -
Cre04g2203 966 SMART LRR_typ_2 520 544 IPR003591 -
Cre04g2203 966 SMART LRR_typ_2 156 179 IPR003591 -
Cre04g2203 966 SMART LRR_typ_2 277 300 IPR003591 -
Cre04g2203 966 Pfam Leucine Rich Repeat 522 542 IPR001611 GO:0005515(InterPro)
Cre04g2203 966 Pfam Leucine Rich Repeat 231 253 IPR001611 GO:0005515(InterPro)
Cre04g2203 966 Pfam Leucine Rich Repeat 87 108 IPR001611 GO:0005515(InterPro)
Cre04g2203 966 Pfam Leucine Rich Repeat 498 520 IPR001611 GO:0005515(InterPro)
Cre04g2203 966 Pfam Leucine Rich Repeat 351 371 IPR001611 GO:0005515(InterPro)
Cre04g2203 966 Pfam Leucine Rich Repeat 183 204 IPR001611 GO:0005515(InterPro)
Cre04g2203 966 Pfam Leucine Rich Repeat 547 567 IPR001611 GO:0005515(InterPro)
Cre04g2203 966 Pfam Leucine Rich Repeat 451 472 IPR001611 GO:0005515(InterPro)
Cre04g2203 966 Pfam Leucine Rich Repeat 474 496 IPR001611 GO:0005515(InterPro)
Cre04g2203 966 Pfam Leucine Rich Repeat 158 178 IPR001611 GO:0005515(InterPro)
Cre04g2203 966 Pfam Leucine Rich Repeat 280 301 IPR001611 GO:0005515(InterPro)
Cre04g2203 966 SMART serkin_6 682 931 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre04g2203 966 Pfam Leucine rich repeat N-terminal domain 38 79 IPR013210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g2203 Cre-Chr4:39133367 Cre10g0980 Cre-Chr10:14300229 4.40E-151 dispersed
Cre04g2203 Cre-Chr4:39133367 Cre04g1420 Cre-Chr4:32992807 1.30E-107 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64100 PF07714 PK_Tyr_Ser-Thr 3.20E-46 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g2203 - - - 0.0