Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cre05g0068 | ATGGAAACTGGATCCCAAAGATCATCAGGGCGAGGGCAGGTTGTTCCCAATATCAATTATCAAGTTCAAGTGTCGTTCCATCTCTCAAATGCACCGCATGATCCCCAGCCCATCCAGGAAATGGGATTCGTGCAATTGGAAGAGCAGAGCCAGGTTTTGAGCTTCTTGGCACCAAATAACGCCGCTATGCCACCTGCCTTTACTAACCCTACTACTTCTGCTCACACCTCACACCTCCTGCCTCGACCTTCATGGAGTTCACAACAGCAGGTGGGCGGAACAGTGGATCCGAAGGCCGGGAACGAGGAAAACTGCACGGGTAGTGCTAGTGACGGCAGCAATTCATGGTGGAGAAACACAAACCCAGATAAGAGTAAGGTGAAGGTGAGGAGAAAGCTGAGAGAGCCGCGTTTCTGTTTCCAGACCAGAAGCGATGTAGATGTCCTCGACGATGGCTATAAATGGAGAAAATATGGCCAAAAAGTCGTCAAGAACAGCCTTCATCCTAGAAGCTATTATCGTTGCACGCATAGCAACTGCCGAGTGAAGAAGAGGGTGGAGCGACTGTCGGAGGATTGCCGGATGGTGATAACCACCTACGAAGGGTTAGGCGACGCCAAATCCAGTTGCACCTATAAAATCATTTTTACGCATCAACCCGCTTCAACTGCGGTCTCGGCGTCTCCCACTACACAGTTTGAAGAGAAGCATAGCTCAGCAGAACACGCCGGTCCACAAAAAATGGAGCAGAGCTTTATCATGATCAAGCCTGATGGAGTTCAGAGAGGCCTGGTTGGAGAGATCATCAGTAGGTTTGAGAAGAAGGGCTTTTCTCTAAGAGGTTTGAAACTCATGTCTGTGGATCGTGCTTTTGCTGAGAATCATTACTCTGATCTTGCTGGAAAGCCCTTTTTCAATGGATTGATTGAATACATAATTTCTGGCCCCGTCGTTGCAATGATCTGGGAGGGGAAAAATGTTGTAGCAACTGGTAGGAAGATCATCGGAGCCACGAAGCCAGTAGATTCTGATGTGGGAACCATCCGTGGTGACTATGCAATTGATGTTGGCAGGAACATCATTCATGGAAGTGACTCGGTGGAGAGTGCAAGGAAGGAAATTGCTCTGTGGTTCCCTGAAGGTCCAGTTTCCTGGCAGAGCAACCTTCATTCCTGGATCTACGATGGCATGGTTGGTTGCATGCTGTTTTTGACACCTGAAATCTTGAAACCAAATGGTGCCTCACTACCAATGGCTGGTACGACACTCAGCAGAGAAACGGTAGTTTATGAAAATGTGAGAGAGGAGACGGAATGGGATGATGGTTCTCTTGTCGCTCCGCGGGCAGCGGCCTAG | 1356 | 48.97 | METGSQRSSGRGQVVPNINYQVQVSFHLSNAPHDPQPIQEMGFVQLEEQSQVLSFLAPNNAAMPPAFTNPTTSAHTSHLLPRPSWSSQQQVGGTVDPKAGNEENCTGSASDGSNSWWRNTNPDKSKVKVRRKLREPRFCFQTRSDVDVLDDGYKWRKYGQKVVKNSLHPRSYYRCTHSNCRVKKRVERLSEDCRMVITTYEGLGDAKSSCTYKIIFTHQPASTAVSASPTTQFEEKHSSAEHAGPQKMEQSFIMIKPDGVQRGLVGEIISRFEKKGFSLRGLKLMSVDRAFAENHYSDLAGKPFFNGLIEYIISGPVVAMIWEGKNVVATGRKIIGATKPVDSDVGTIRGDYAIDVGRNIIHGSDSVESARKEIALWFPEGPVSWQSNLHSWIYDGMVGCMLFLTPEILKPNGASLPMAGTTLSRETVVYENVREETEWDDGSLVAPRAAA | 451 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 893718 | 900428 | + | CrPI670011_05g000680.1 | Cre05g0068 | 496581 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cre05g0068 | 451 | CDD | NDPk_I | 249 | 378 | - | - | |
| Cre05g0068 | 451 | PANTHER | NUCLEOSIDE DIPHOSPHATE KINASE | 238 | 394 | - | GO:0004550(PANTHER) | |
| Cre05g0068 | 451 | Gene3D | WRKY domain | 136 | 202 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cre05g0068 | 451 | ProSitePatterns | Nucleoside diphosphate kinases active site. | 359 | 367 | IPR023005 | - | |
| Cre05g0068 | 451 | PRINTS | Nucleoside diphosphate kinase signature | 315 | 332 | IPR001564 | GO:0004550(InterPro)|GO:0006183(InterPro)|GO:0006228(InterPro)|GO:0006241(InterPro) | |
| Cre05g0068 | 451 | PRINTS | Nucleoside diphosphate kinase signature | 251 | 273 | IPR001564 | GO:0004550(InterPro)|GO:0006183(InterPro)|GO:0006228(InterPro)|GO:0006241(InterPro) | |
| Cre05g0068 | 451 | PRINTS | Nucleoside diphosphate kinase signature | 295 | 314 | IPR001564 | GO:0004550(InterPro)|GO:0006183(InterPro)|GO:0006228(InterPro)|GO:0006241(InterPro) | |
| Cre05g0068 | 451 | PRINTS | Nucleoside diphosphate kinase signature | 336 | 352 | IPR001564 | GO:0004550(InterPro)|GO:0006183(InterPro)|GO:0006228(InterPro)|GO:0006241(InterPro) | |
| Cre05g0068 | 451 | PRINTS | Nucleoside diphosphate kinase signature | 359 | 378 | IPR001564 | GO:0004550(InterPro)|GO:0006183(InterPro)|GO:0006228(InterPro)|GO:0006241(InterPro) | |
| Cre05g0068 | 451 | MobiDBLite | consensus disorder prediction | 68 | 122 | - | - | |
| Cre05g0068 | 451 | SUPERFAMILY | WRKY DNA-binding domain | 141 | 202 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cre05g0068 | 451 | Pfam | WRKY DNA -binding domain | 150 | 202 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cre05g0068 | 451 | SMART | WRKY_cls | 149 | 208 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cre05g0068 | 451 | FunFam | Nucleoside diphosphate kinase | 245 | 395 | - | - | |
| Cre05g0068 | 451 | FunFam | WRKY transcription factor 57 | 135 | 208 | - | - | |
| Cre05g0068 | 451 | Hamap | Nucleoside diphosphate kinase [ndk]. | 248 | 383 | IPR001564 | GO:0004550(InterPro)|GO:0006183(InterPro)|GO:0006228(InterPro)|GO:0006241(InterPro) | |
| Cre05g0068 | 451 | SUPERFAMILY | Nucleoside diphosphate kinase, NDK | 248 | 394 | IPR036850 | - | |
| Cre05g0068 | 451 | ProSiteProfiles | WRKY domain profile. | 144 | 202 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cre05g0068 | 451 | SMART | ndk_5 | 248 | 385 | IPR034907 | - | |
| Cre05g0068 | 451 | Pfam | Nucleoside diphosphate kinase | 249 | 380 | IPR034907 | - | |
| Cre05g0068 | 451 | Gene3D | - | 247 | 396 | IPR036850 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cre03g0649 | Cre-Chr3:5378454 | Cre05g0068 | Cre-Chr5:893718 | 2.10E-51 | dispersed | |
| Cre04g1218 | Cre-Chr4:30885401 | Cre05g0068 | Cre-Chr5:893718 | 1.20E-31 | dispersed | |
| Cre05g0068 | Cre-Chr5:893718 | Cre07g1521 | Cre-Chr7:30481525 | 5.70E-45 | dispersed | |
| Cre05g0068 | Cre-Chr5:893718 | Cre02g0437 | Cre-Chr2:1591036 | 2.50E-32 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 53572 | PF00334 | NDK | 3.30E-52 | No_clan | Cre | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cre05g0068 | K00940 | - | csv:101216931 | 305.834 |