Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g0071 ATGAAGAGGATTCCAGAGTCAAAAGCACTTCCATTATTACTGCCCATAGAGATGCTTCCAGAATCAAATGTACTTCCGGGAAAATTTTGTGTTTTGGATGATATACCAAAAGCACATGTGGCCTCAGCCAAGCAAGCTGGCCACTGGTCGAACATGCACTCAGCTAAGGTACGAGACGTGGGAAGATCAATTGGACAAGGATTTCAAGATTCAGAAGTTTCTGCACCTATACGGACGTCAAAGGGGAAATCCTCTTTTTTGGGGCAGGAAGAAGCTAAGCGTGATGTCACTTTAAAGGGCAGTAGCTCTTTGATTGAGGAAGGTGGTCCAAGTTCCTTCTCTGGGGCTAGCCACCCGCCAGAGCCTGTGGATATGGATCTAATGAGAACTGTTTATGTACCCATAGGGCAAAATAAACCTGATCCCGGCTGCTTGATGAAGAGCTTTTCCGTTAAGGGCCCTTTTCTTGAGGATCTTTCAATTAGGGTTCCAGCCAAGAAACCAAGCCCTGCTGTTCTCTCCCCTACAGAAAGCTTAGTTGACGAGCCGCATGACTTGGGTGTTTTATCTTCCCCTTTTTCAATTCCTCGTGCATCACAAAATACAGAAACCTCTCTACTTCCCCCAGATTCTGAGGAGAAGGAATGTGTTTGGGATGCTTCTTTGCCCCCAAGTGGCAATGTAAGTCCACTCAGTAGCATTGACAGTAGTGGAGTTGTCACAGCTATGAGCATTGTTAATAGTTGTGCTAGCACATATCGAAGTGATGGAATGGTTAGTATTGAAAGGAACTGTGAGAGTACAAAAGGAAGCATTAGAGGGGACTCTCTCGAGAGTGCAAAAACAAGTATTAGTCGAGCTAGTGATAGCAGTGGTCTCAGCGATGATAGTAGTTGGAGTAACATCACAGGAAGTGCTAATAAGCCTCACAAAGGAAACGATCCTAGGTGGAAAGCCATTCTTGCTATTCGAGCAAGAGATGGAATATTAGGCATGAGCCATTTTAGACTGCTGAAAAGACTTGGATGTGGCGATATTGGTAGTGTTTATCTCTCAGAGCTAAGTGGGACGCGCTGTTATTTTGCAATGAAAGTAATGGACAAGGCATCGCTTGCTATAAGGAAGAAGTTAACGAGAGCTCAGACAGAAAGGGAGATCTTGCAGTTACTTGACCATCCATTTCTGCCGACTTTGTACACCCATTTTGAGACTGACAGATTTTCCTGTCTAGTAATGGAATATTGTCCAGGGGGAGACCTGCACACTTTGAGGCAACGGCAACCAGGGAAACACTTCTCTGAGTATGCTGCAAGGTTCTATGCTGCAGAGGTTTTACTGGCCCTCGAATATCTCCACATGCTTGGAGTTGTCTATAGGGACTTGAAACCGGAGAATGTACTGGTTCGTGATGACGGCCACATAATGCTCTCAGATTTCGACCTTTCACTAAGATGTGCAGTGTCACCCACCCTGATAAAAACCTCATACGATTCTGACCCATCAAAACGAGCTGCATTCTGTGTCCAGCCTGCCTGTATTGAGCCATCATCAGTTTGCATCCAACCAGCATGTTTTATTCCTCGACTCTTCCCTCAGAAAAGCAAAAAGAAAAGTCCCAAGCCTCGAAGTGATCTGGGCTTGCAATCCAGTGCTCTTCCCGAGCTGGTAGCAGAGCCTACTGCTGCCCGATCCATGTCTTTTGTTGGCACCCATGAATACCTAGCCCCTGAAATCATCAAAGGAGAGGGTCATGGAAGTGCTGTTGATTGGTGGACTTTTGGCATTTTCTTGCATGAACTATTGTATGGAAAAACCCCGTTCAAGGGATCCGGAAACAGAGCCACACTATTCAATGTAGTAGGGCAGCAACTGAAGTTCCCGGAGTCTCCGGCAACTAGTTATGCTAGCCGAGATCTTATTCGAGGTTTGCTAGTAAAGGAGCCACAGCATCGGCTCGGAGTGAAGAGGGGAGCAACGGAGATCAAGCAGCATCCTTTCTTTGAAGGTGTGAATTGGGCTTTGATACGATGCAGCACGCCCCCAGAAGTGCCAAGACCAATGGAGGCGGAACTGCCTAAGTTTGGGGTAGTTGACACAACAGGGGTTGGGAGCAGCAGTAAGAGGATGGTAGGTACAGATGTTGTTAAGTCTGGTGGTCAATATCTTGACTTCGAGTTCTTTTAA 2184 46.29 MKRIPESKALPLLLPIEMLPESNVLPGKFCVLDDIPKAHVASAKQAGHWSNMHSAKVRDVGRSIGQGFQDSEVSAPIRTSKGKSSFLGQEEAKRDVTLKGSSSLIEEGGPSSFSGASHPPEPVDMDLMRTVYVPIGQNKPDPGCLMKSFSVKGPFLEDLSIRVPAKKPSPAVLSPTESLVDEPHDLGVLSSPFSIPRASQNTETSLLPPDSEEKECVWDASLPPSGNVSPLSSIDSSGVVTAMSIVNSCASTYRSDGMVSIERNCESTKGSIRGDSLESAKTSISRASDSSGLSDDSSWSNITGSANKPHKGNDPRWKAILAIRARDGILGMSHFRLLKRLGCGDIGSVYLSELSGTRCYFAMKVMDKASLAIRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSYDSDPSKRAAFCVQPACIEPSSVCIQPACFIPRLFPQKSKKKSPKPRSDLGLQSSALPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLKFPESPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTPPEVPRPMEAELPKFGVVDTTGVGSSSKRMVGTDVVKSGGQYLDFEFF 727
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 906286 910796 - CrPI670011_05g000710.1 Cre05g0071 496584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g0071 727 MobiDBLite consensus disorder prediction 269 308 - -
Cre05g0071 727 Gene3D Transferase(Phosphotransferase) domain 1 419 490 - -
Cre05g0071 727 ProSiteProfiles Protein kinase domain profile. 335 667 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre05g0071 727 MobiDBLite consensus disorder prediction 68 86 - -
Cre05g0071 727 Pfam Protein kinase domain 564 667 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre05g0071 727 Pfam Protein kinase domain 336 486 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre05g0071 727 MobiDBLite consensus disorder prediction 191 214 - -
Cre05g0071 727 FunFam serine/threonine-protein kinase D6PK-like 562 685 - -
Cre05g0071 727 MobiDBLite consensus disorder prediction 193 207 - -
Cre05g0071 727 FunFam Serine/threonine-protein kinase D6PK-like 333 418 - -
Cre05g0071 727 Gene3D Phosphorylase Kinase; domain 1 333 418 - -
Cre05g0071 727 PANTHER FLIPPASE KINASE 1-RELATED 211 688 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cre05g0071 727 MobiDBLite consensus disorder prediction 68 120 - -
Cre05g0071 727 ProSitePatterns Serine/Threonine protein kinases active-site signature. 456 468 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre05g0071 727 MobiDBLite consensus disorder prediction 269 312 - -
Cre05g0071 727 SUPERFAMILY Protein kinase-like (PK-like) 317 691 IPR011009 -
Cre05g0071 727 CDD STKc_phototropin_like 333 686 - -
Cre05g0071 727 SMART serkin_6 335 667 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre05g0071 727 FunFam serine/threonine-protein kinase D6PK-like 419 486 - -
Cre05g0071 727 Gene3D Transferase(Phosphotransferase) domain 1 562 684 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2508 Cre-Chr2:38353164 Cre05g0071 Cre-Chr5:906286 1.80E-148 dispersed
Cre02g2510 Cre-Chr2:38371670 Cre05g0071 Cre-Chr5:906286 3.10E-114 dispersed
Cre05g0071 Cre-Chr5:906286 Cre10g1529 Cre-Chr10:29217918 1.00E-181 dispersed
Cre05g0071 Cre-Chr5:906286 Cre01g1029 Cre-Chr1:16858212 1.00E-189 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64101 PF00069 Pkinase 5.30E-36 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g0071 - - - 0.0