Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre05g0101 | ATGGAACCATTTTTCAATTATATTGAAGCATCTGATGCTAAAGCAACCACCTTTTGCAACTCTGCCTCTATCACAACCCATGAATACCAACAAGTTTCTAAGAACCGTAAACAGAGGAGCACTCAAGAAAACAGAGATCATCACCCTATGTTCAGAGGGGTTCGAAAACGAAATTGGGGAAAATGGGTCTCTGAGATTCGCGAGCCAAGGAAGAAGACCAGAATTTGGCTTGGAACTTACCCAACGCCGGAAATGGCAGCCCGAGCCCATGACGCCGCCGCGCTGGCTATTAAGGGTCACTCTGCTTTTCTCAATTTCCCTGAATTGGCCCAATTCCTACCTCGCCCGCTCTCCAGGTCCCACAAGGACATTCAGGCCGCCGCGGCACAGGCGGCAGCCGCCACATTTTCTGCTGGAAGTGACGCTGAAGGTGGAGGAGGAGAAGCGGCGGAGGAGAGCAGGGAGACTCTGTTTCCTGGAAGCGACGGGGGAGACAGAACAGAGGACTCTACAAACTCCCTGTCGACGGCAGCCGGTGATGAGACATTGTTCGATTTGCCAGATTTGTTCGTCGGAAGTTCTGATTTGAAAGACGGGTTTGTTTATCATTCTTCGTTGTGGCAGTTCTGTGCTGCGGCCGATCATAATGGTTTTCGGCTAGAAGAGCCTTCATTCTGGGAACTAATTTAA | 690 | 50.43 | MEPFFNYIEASDAKATTFCNSASITTHEYQQVSKNRKQRSTQENRDHHPMFRGVRKRNWGKWVSEIREPRKKTRIWLGTYPTPEMAARAHDAAALAIKGHSAFLNFPELAQFLPRPLSRSHKDIQAAAAQAAAATFSAGSDAEGGGGEAAEESRETLFPGSDGGDRTEDSTNSLSTAAGDETLFDLPDLFVGSSDLKDGFVYHSSLWQFCAAADHNGFRLEEPSFWELI | 229 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 1244466 | 1245155 | - | CrPI670011_05g001010.1 | Cre05g0101 | 496614 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre05g0101 | 229 | ProSiteProfiles | AP2/ERF domain profile. | 50 | 107 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre05g0101 | 229 | FunFam | Ethylene-responsive transcription factor 2 | 49 | 108 | - | - | |
Cre05g0101 | 229 | CDD | AP2 | 51 | 109 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre05g0101 | 229 | MobiDBLite | consensus disorder prediction | 27 | 48 | - | - | |
Cre05g0101 | 229 | Gene3D | AP2/ERF domain | 50 | 108 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre05g0101 | 229 | MobiDBLite | consensus disorder prediction | 138 | 176 | - | - | |
Cre05g0101 | 229 | Pfam | AP2 domain | 51 | 100 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre05g0101 | 229 | SUPERFAMILY | DNA-binding domain | 50 | 108 | IPR016177 | GO:0003677(InterPro) | |
Cre05g0101 | 229 | PRINTS | Ethylene responsive element binding protein signature | 51 | 62 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre05g0101 | 229 | PRINTS | Ethylene responsive element binding protein signature | 73 | 89 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre05g0101 | 229 | MobiDBLite | consensus disorder prediction | 32 | 48 | - | - | |
Cre05g0101 | 229 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 36 | 202 | IPR051032 | - | |
Cre05g0101 | 229 | SMART | rav1_2 | 50 | 113 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre05g0101 | Cre-Chr5:1244466 | Cre06g1012 | Cre-Chr6:3752157 | 5.10E-34 | dispersed | |
Cre05g0101 | Cre-Chr5:1244466 | Cre09g0167 | Cre-Chr9:1934111 | 2.30E-34 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
53579 | PF00847 | AP2 | 4.30E-15 | CL0081 | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre05g0101 | - | - | - | 0.0 |