Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g0101 ATGGAACCATTTTTCAATTATATTGAAGCATCTGATGCTAAAGCAACCACCTTTTGCAACTCTGCCTCTATCACAACCCATGAATACCAACAAGTTTCTAAGAACCGTAAACAGAGGAGCACTCAAGAAAACAGAGATCATCACCCTATGTTCAGAGGGGTTCGAAAACGAAATTGGGGAAAATGGGTCTCTGAGATTCGCGAGCCAAGGAAGAAGACCAGAATTTGGCTTGGAACTTACCCAACGCCGGAAATGGCAGCCCGAGCCCATGACGCCGCCGCGCTGGCTATTAAGGGTCACTCTGCTTTTCTCAATTTCCCTGAATTGGCCCAATTCCTACCTCGCCCGCTCTCCAGGTCCCACAAGGACATTCAGGCCGCCGCGGCACAGGCGGCAGCCGCCACATTTTCTGCTGGAAGTGACGCTGAAGGTGGAGGAGGAGAAGCGGCGGAGGAGAGCAGGGAGACTCTGTTTCCTGGAAGCGACGGGGGAGACAGAACAGAGGACTCTACAAACTCCCTGTCGACGGCAGCCGGTGATGAGACATTGTTCGATTTGCCAGATTTGTTCGTCGGAAGTTCTGATTTGAAAGACGGGTTTGTTTATCATTCTTCGTTGTGGCAGTTCTGTGCTGCGGCCGATCATAATGGTTTTCGGCTAGAAGAGCCTTCATTCTGGGAACTAATTTAA 690 50.43 MEPFFNYIEASDAKATTFCNSASITTHEYQQVSKNRKQRSTQENRDHHPMFRGVRKRNWGKWVSEIREPRKKTRIWLGTYPTPEMAARAHDAAALAIKGHSAFLNFPELAQFLPRPLSRSHKDIQAAAAQAAAATFSAGSDAEGGGGEAAEESRETLFPGSDGGDRTEDSTNSLSTAAGDETLFDLPDLFVGSSDLKDGFVYHSSLWQFCAAADHNGFRLEEPSFWELI 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1244466 1245155 - CrPI670011_05g001010.1 Cre05g0101 496614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g0101 229 ProSiteProfiles AP2/ERF domain profile. 50 107 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g0101 229 FunFam Ethylene-responsive transcription factor 2 49 108 - -
Cre05g0101 229 CDD AP2 51 109 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g0101 229 MobiDBLite consensus disorder prediction 27 48 - -
Cre05g0101 229 Gene3D AP2/ERF domain 50 108 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g0101 229 MobiDBLite consensus disorder prediction 138 176 - -
Cre05g0101 229 Pfam AP2 domain 51 100 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g0101 229 SUPERFAMILY DNA-binding domain 50 108 IPR016177 GO:0003677(InterPro)
Cre05g0101 229 PRINTS Ethylene responsive element binding protein signature 51 62 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g0101 229 PRINTS Ethylene responsive element binding protein signature 73 89 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g0101 229 MobiDBLite consensus disorder prediction 32 48 - -
Cre05g0101 229 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 36 202 IPR051032 -
Cre05g0101 229 SMART rav1_2 50 113 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g0101 Cre-Chr5:1244466 Cre06g1012 Cre-Chr6:3752157 5.10E-34 dispersed
Cre05g0101 Cre-Chr5:1244466 Cre09g0167 Cre-Chr9:1934111 2.30E-34 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53579 PF00847 AP2 4.30E-15 CL0081 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g0101 - - - 0.0