Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g0107 ATGGGCGGGAGAGATGATGAGTTGGGGCTGAGTTTGAGTTTAGGGTTTGGAGTTACGACTCAGCCTTCTTTCCAGCCGACTCACATGCACAGGCCGTTGAATAACTCCATGCATAATCACCTCCGCAAGAGTTCTTGGAATGAGCTTTTTCAATTTTCTGATCGAAACGCCGATTCGAGGTCGTTTCTTAGGGGAATCGACGTGAATCGGTTACCGACGGGCGCAGACGGTGAGGAAGAGAACGGCGTTTCATCTCCGAACAGTACGATTTCTAGCATCAGTGGAAAGAGGAGTGAGAGAGAAGCGGCCGGAGACGAGGCTGAGGCTGAGGCTGAGGCCGAGGCTGGGGCAGAGGCGGAAGCCGAGAGAGCCTCGTGCTCGCGAGGGAGTGACGATGAGGACGGCGGAGGCGGCGACGGTGACGCCTCGAGAAAGAAGCTGAGGCTATCGAAGGAACAGTCGATGGTTCTTGAGGAGACTTTCAAAGAGCATAATACGCTCAATCCAAAGCAAAAGCTGGCACTTGCCAAGCAGCTGAATCTGACACCAAGACAAGTGGAGGTGTGGTTTCAAAACAGAAGGGCACGGACCAAATTGAAGCAAACAGAAGTGGATTGTGAGTACTTGAAGAGGTGCTGTGAGAATCTCACAGAGGAAAACAGAAGGCTGCAGAAGGAAGTGCAAGAGTTGAGAGCACTCAAGCTTTCTCCACAGCTCTATATGCACATGAATCCTCCAACAACCCTCACCATGTGCCCTCAATGTGAGCGTGTGGCGGTTTCTTCGTCTTCTTCGGCCTCGGCTGCTACGACCACACGCCATCCAGCAGCAGCTAGTGTGCAGCGCCCCCCAATGGCCATTAACCCGTGGGCGGTGTTACCAATCCAACGTTGA 894 53.24 MGGRDDELGLSLSLGFGVTTQPSFQPTHMHRPLNNSMHNHLRKSSWNELFQFSDRNADSRSFLRGIDVNRLPTGADGEEENGVSSPNSTISSISGKRSEREAAGDEAEAEAEAEAGAEAEAERASCSRGSDDEDGGGGDGDASRKKLRLSKEQSMVLEETFKEHNTLNPKQKLALAKQLNLTPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEENRRLQKEVQELRALKLSPQLYMHMNPPTTLTMCPQCERVAVSSSSSASAATTTRHPAAASVQRPPMAINPWAVLPIQR 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1285485 1287506 + CrPI670011_05g001070.1 Cre05g0107 496620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g0107 297 Coils Coil 206 236 - -
Cre05g0107 297 Pfam Homeobox associated leucine zipper 200 234 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cre05g0107 297 SMART HOX_1 142 204 IPR001356 GO:0003677(InterPro)
Cre05g0107 297 ProSitePatterns 'Homeobox' domain signature. 175 198 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cre05g0107 297 MobiDBLite consensus disorder prediction 71 145 - -
Cre05g0107 297 ProSiteProfiles 'Homeobox' domain profile. 140 200 IPR001356 GO:0003677(InterPro)
Cre05g0107 297 Pfam HD-ZIP protein N terminus 1 101 IPR006712 GO:0005634(InterPro)
Cre05g0107 297 SMART halz 200 243 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cre05g0107 297 Pfam Homeodomain 144 198 IPR001356 GO:0003677(InterPro)
Cre05g0107 297 Gene3D - 137 205 - -
Cre05g0107 297 MobiDBLite consensus disorder prediction 80 96 - -
Cre05g0107 297 SUPERFAMILY Homeodomain-like 130 201 IPR009057 -
Cre05g0107 297 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 7 276 IPR050762 -
Cre05g0107 297 CDD homeodomain 144 201 IPR001356 GO:0003677(InterPro)
Cre05g0107 297 MobiDBLite consensus disorder prediction 116 145 - -
Cre05g0107 297 MobiDBLite consensus disorder prediction 263 277 - -
Cre05g0107 297 MobiDBLite consensus disorder prediction 263 282 - -
Cre05g0107 297 FunFam Homeobox-leucine zipper protein 18 129 205 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g0107 Cre-Chr5:1285485 Cre10g0495 Cre-Chr10:4074247 2.50E-73 dispersed
Cre05g0107 Cre-Chr5:1285485 Cre09g0360 Cre-Chr9:3557224 9.60E-49 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53580 PF04618 HD-ZIP_N 4.00E-31 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g0107 K09338 - csv:101222132 444.506