Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre05g0107 | ATGGGCGGGAGAGATGATGAGTTGGGGCTGAGTTTGAGTTTAGGGTTTGGAGTTACGACTCAGCCTTCTTTCCAGCCGACTCACATGCACAGGCCGTTGAATAACTCCATGCATAATCACCTCCGCAAGAGTTCTTGGAATGAGCTTTTTCAATTTTCTGATCGAAACGCCGATTCGAGGTCGTTTCTTAGGGGAATCGACGTGAATCGGTTACCGACGGGCGCAGACGGTGAGGAAGAGAACGGCGTTTCATCTCCGAACAGTACGATTTCTAGCATCAGTGGAAAGAGGAGTGAGAGAGAAGCGGCCGGAGACGAGGCTGAGGCTGAGGCTGAGGCCGAGGCTGGGGCAGAGGCGGAAGCCGAGAGAGCCTCGTGCTCGCGAGGGAGTGACGATGAGGACGGCGGAGGCGGCGACGGTGACGCCTCGAGAAAGAAGCTGAGGCTATCGAAGGAACAGTCGATGGTTCTTGAGGAGACTTTCAAAGAGCATAATACGCTCAATCCAAAGCAAAAGCTGGCACTTGCCAAGCAGCTGAATCTGACACCAAGACAAGTGGAGGTGTGGTTTCAAAACAGAAGGGCACGGACCAAATTGAAGCAAACAGAAGTGGATTGTGAGTACTTGAAGAGGTGCTGTGAGAATCTCACAGAGGAAAACAGAAGGCTGCAGAAGGAAGTGCAAGAGTTGAGAGCACTCAAGCTTTCTCCACAGCTCTATATGCACATGAATCCTCCAACAACCCTCACCATGTGCCCTCAATGTGAGCGTGTGGCGGTTTCTTCGTCTTCTTCGGCCTCGGCTGCTACGACCACACGCCATCCAGCAGCAGCTAGTGTGCAGCGCCCCCCAATGGCCATTAACCCGTGGGCGGTGTTACCAATCCAACGTTGA | 894 | 53.24 | MGGRDDELGLSLSLGFGVTTQPSFQPTHMHRPLNNSMHNHLRKSSWNELFQFSDRNADSRSFLRGIDVNRLPTGADGEEENGVSSPNSTISSISGKRSEREAAGDEAEAEAEAEAGAEAEAERASCSRGSDDEDGGGGDGDASRKKLRLSKEQSMVLEETFKEHNTLNPKQKLALAKQLNLTPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEENRRLQKEVQELRALKLSPQLYMHMNPPTTLTMCPQCERVAVSSSSSASAATTTRHPAAASVQRPPMAINPWAVLPIQR | 297 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 1285485 | 1287506 | + | CrPI670011_05g001070.1 | Cre05g0107 | 496620 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre05g0107 | 297 | Coils | Coil | 206 | 236 | - | - | |
Cre05g0107 | 297 | Pfam | Homeobox associated leucine zipper | 200 | 234 | IPR003106 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cre05g0107 | 297 | SMART | HOX_1 | 142 | 204 | IPR001356 | GO:0003677(InterPro) | |
Cre05g0107 | 297 | ProSitePatterns | 'Homeobox' domain signature. | 175 | 198 | IPR017970 | GO:0000981(InterPro)|GO:0006355(InterPro) | |
Cre05g0107 | 297 | MobiDBLite | consensus disorder prediction | 71 | 145 | - | - | |
Cre05g0107 | 297 | ProSiteProfiles | 'Homeobox' domain profile. | 140 | 200 | IPR001356 | GO:0003677(InterPro) | |
Cre05g0107 | 297 | Pfam | HD-ZIP protein N terminus | 1 | 101 | IPR006712 | GO:0005634(InterPro) | |
Cre05g0107 | 297 | SMART | halz | 200 | 243 | IPR003106 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cre05g0107 | 297 | Pfam | Homeodomain | 144 | 198 | IPR001356 | GO:0003677(InterPro) | |
Cre05g0107 | 297 | Gene3D | - | 137 | 205 | - | - | |
Cre05g0107 | 297 | MobiDBLite | consensus disorder prediction | 80 | 96 | - | - | |
Cre05g0107 | 297 | SUPERFAMILY | Homeodomain-like | 130 | 201 | IPR009057 | - | |
Cre05g0107 | 297 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 | 7 | 276 | IPR050762 | - | |
Cre05g0107 | 297 | CDD | homeodomain | 144 | 201 | IPR001356 | GO:0003677(InterPro) | |
Cre05g0107 | 297 | MobiDBLite | consensus disorder prediction | 116 | 145 | - | - | |
Cre05g0107 | 297 | MobiDBLite | consensus disorder prediction | 263 | 277 | - | - | |
Cre05g0107 | 297 | MobiDBLite | consensus disorder prediction | 263 | 282 | - | - | |
Cre05g0107 | 297 | FunFam | Homeobox-leucine zipper protein 18 | 129 | 205 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre05g0107 | Cre-Chr5:1285485 | Cre10g0495 | Cre-Chr10:4074247 | 2.50E-73 | dispersed | |
Cre05g0107 | Cre-Chr5:1285485 | Cre09g0360 | Cre-Chr9:3557224 | 9.60E-49 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
53580 | PF04618 | HD-ZIP_N | 4.00E-31 | No_clan | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre05g0107 | K09338 | - | csv:101222132 | 444.506 |