Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g0117 ATGAACGGCAAAACTCCGGCCACGAGGACTCGTGTTGGGAAGTACGAGCTCGGTAAAACCCTCGGCGAGGGAACTTTTGCTAAGGTCAAGTTCGCGAAGAACGTTGAGAATGGTGATTATGTCGCCATTAAGATTCTCGATCGTGAAAAAGTTCTTCGCCACAGGATGGTCGAACAGATCAAAAGAGAGATTTCGACTCTGAAAGTGATCAAGCATCCGAATGTTTGTAAGATTTATGAGGTTATGGCAAGCAAATCAAAGATCTACATTGTTCTTGAGTTTGTGGATGGAGGCGAGCTCTTTGACAAGATAGCCGCAAAGGGAAGGCTTAAAGAGGATGAGGCAAGGAAATATTTCCAGCAACTTATAAATGCTGTAGATTACTGCCATAGTAGAGGCGTCTACCATCGAGATCTAAAGCCTGAAAATCTTCTTCTGGATTCACATGATGTTCTTAAAGTGTCAGATTTTGGATTGAGTGCATTTTCGCAGCAAGTGCGAGGGGATGGTCTTCTTCACACTGCCTGTGGGACACCAAACTACGTAGCTCCTGAGGTCTTCAATGATAAAGGTTATGATGGTACATCATCAGATATTTGGTCATGCGGGGTTATTCTCTTTGTTCTTATGGCTGGCTTCTTGCCTTTTGACGAGCCAAATCTAATGTGTTTGTACAGAAAAATTTCAAATGCTGATTTTTCCTTTCCATCATGGTTCTCAAGTGGTGCAAGAAAACTAGTTTGCCGCATTCTTGATCCAGACCCTATTAATCGAATAACAATAGCCGAAATTCAAGAAGATCCATGGTTCAAGAAGGGCTACACACCTGCTCATTTTGAAGTGGAAGAGGATATAACTCTCGATGATGTAGATGCCGCTTTTAGCAGCAGCTCAAAGGAACATCTTGTGACCGAAAGAAAAGAGAAGCCAGTGTCCATGAATGCTTTCGAGCTTATCTCTAGGTCACCTGGTTTTAGTCTTGAAAATCTATTTGAGAAGCAGAAGGCTGTTGCAAAGAGAGAAACCCGTTTTACTTCGCAAAGCCCTGCAAACGAGATCATGTCGAAGATTGAGGAAACTGCAAAACCAATGGGGTTCAATGTACGAAAACGGGACTACAAGATGAAGTTGCAAGGTGACAAAACTGGGAGGAAAGGACACCTCTCCATAGCCACTGAGGTGTTTGAGGTGGCTCCTTCATTGCATATGGTCGAGCTTCGGAAAACAGGGGGCGATACGCTCGAGTTTCATAAGGCATGTCATCAGTATTCCTAG 1275 43.61 MNGKTPATRTRVGKYELGKTLGEGTFAKVKFAKNVENGDYVAIKILDREKVLRHRMVEQIKREISTLKVIKHPNVCKIYEVMASKSKIYIVLEFVDGGELFDKIAAKGRLKEDEARKYFQQLINAVDYCHSRGVYHRDLKPENLLLDSHDVLKVSDFGLSAFSQQVRGDGLLHTACGTPNYVAPEVFNDKGYDGTSSDIWSCGVILFVLMAGFLPFDEPNLMCLYRKISNADFSFPSWFSSGARKLVCRILDPDPINRITIAEIQEDPWFKKGYTPAHFEVEEDITLDDVDAAFSSSSKEHLVTERKEKPVSMNAFELISRSPGFSLENLFEKQKAVAKRETRFTSQSPANEIMSKIEETAKPMGFNVRKRDYKMKLQGDKTGRKGHLSIATEVFEVAPSLHMVELRKTGGDTLEFHKACHQYS 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1347709 1352383 - CrPI670011_05g001170.1 Cre05g0117 496630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g0117 424 Pfam NAF domain 310 370 IPR004041 GO:0007165(InterPro)
Cre05g0117 424 FunFam Non-specific serine/threonine protein kinase 307 424 - -
Cre05g0117 424 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524(InterPro)
Cre05g0117 424 CDD STKc_SnRK3 14 269 - -
Cre05g0117 424 FunFam Non-specific serine/threonine protein kinase 6 94 - -
Cre05g0117 424 Gene3D Kinase associated domain 1, KA1 307 424 - -
Cre05g0117 424 ProSiteProfiles NAF domain profile. 308 332 IPR018451 GO:0007165(InterPro)
Cre05g0117 424 FunFam Non-specific serine/threonine protein kinase 8 310 - -
Cre05g0117 424 CDD CIPK_C 314 420 - -
Cre05g0117 424 Gene3D Transferase(Phosphotransferase) domain 1 95 276 - -
Cre05g0117 424 SMART serkin_6 15 270 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre05g0117 424 ProSitePatterns Serine/Threonine protein kinases active-site signature. 134 146 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre05g0117 424 Gene3D Phosphorylase Kinase; domain 1 4 94 - -
Cre05g0117 424 Pfam Protein kinase domain 15 270 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre05g0117 424 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 9 417 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Cre05g0117 424 SUPERFAMILY Protein kinase-like (PK-like) 12 303 IPR011009 -
Cre05g0117 424 ProSiteProfiles Protein kinase domain profile. 15 270 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g1069 Cre-Chr3:9780132 Cre05g0117 Cre-Chr5:1347709 1.50E-174 dispersed
Cre04g2087 Cre-Chr4:38082320 Cre05g0117 Cre-Chr5:1347709 2.50E-171 dispersed
Cre05g0117 Cre-Chr5:1347709 Cre06g1984 Cre-Chr6:27287585 6.20E-134 dispersed
Cre05g0117 Cre-Chr5:1347709 Cre09g2491 Cre-Chr9:44169819 8.00E-37 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64102 PF00069 Pkinase 1.10E-71 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g0117 - - - 0.0