Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g0149 ATGAAGATTGAAGATGGGTTGCGGAGTGTTGGTGGGATGGATGAGGATAAGACTGTGGTTGCTGCTGTTTTGGGGACTCGGGCTTTTAATTACTTGATGGCTTGCTCTGTTTCGAATGAGAATCTGTTTATGGCGGTGAGGAATGATGAGAATTTGCAGAACAAGCTGTCGGATCTGGTAGAGAGACCAAACGCTTCCAATTTCAGCTGGAACTATGCAATTTTCTGGCAACTTTCCCATTCTAAATCTGGTGAATGGGTTTTGGGATGGGGAGATGGATCGTGTAGGGATCCTAGGGATGGAGAGGAAACAGAATCTACACAGATTCTTAGTCTCCGGCTTGAAGATGAGAGCCAACAGAGGATGAAGAAAAGAGCACTGCAGAAGCTTCACACACTCTTTGGAGGCTCTGATGAGGATAATTATGCTCTTGGATTAGACAGACTTACTGATACTGAGATGTTTTTTCTTGCTTCCATGTATTTCTCATTCCCTCGTGGAGAGGGGGGCCCTGGAAAGTGTTTGGCGTCCGGGAAACATACCTGGCTTTCAGATGTGCTCAATTTGCCATCTGAATATTGTGTGAGATCATACCTGGCGAAATCTGCGGGAATTCGGACTATTGTTTTGGTGCCGACTGATGTTGGAGTAGTTGAATTGGGTTCTGTTAGATCCGTGAATGAGAGCTTAGAGTTAGTGCAGCTGATCAGATCATTGTTTTCATCCCAACTTTCACTCGACAGAGTTAGGTCATCAGCGGCGATGTCGATGATGGCTGAAAGAAAAGATGAAAGCACCCCATTTGCGAGTTTGGGAATTGCAGAAAGAGGAGAAGGAGGAGGGGGGATTCCTAAGGTTTTTGGGCAGACTTTGAACTCGGGGAACATGGGTCGATCTCATTTCAGAGAGAAACTGGCGGTTAGGAAGATGGATGAGAGGTCATGGGAAGCATGTGCCAATGGAGGTAGAATTCAGTTTCAAAGCCCTCGAAATGGCATTCGCAGTCCGAATTTGGCACATGTTCATGGTCTCAAGCAGGGGAATCCTGCAGAAATTTATGTCTCTCCAACTCCACCAGTAAATAATAATCACGAGCAGCAGCTAGTTAATGGAGTCAGAGATGAATTTTGTCTCAATCCATATCAATCACAAAAGCTGGCCCAAATGCAAATTGATTTCTCAGCAGCAACATCAAGGCCTTCTGTGATTAACCGTGTAATAGCAGATACAGAGCATTCAGATGTAGAGCCTCAATGCAAAGAAGAGGGGCCTGGCACCGATGAAAGACGACCTCGCAAACGAGGCAGAAAGCCTGCAAATGGTAGGGAGGAACCACTAAATCATGTTGAGGCAGAGAGGCAGCGGCGTGAAAAGTTGAACCAGCGGTTCTATGCTTTACGAGCTGTTGTGCCCAATATCTCCAAAATGGACAAAGCTTCACTGCTGGGAGATGCCATTGCTTACATAAACGAGCTTCAAGAAAAAGTGAAGGCCATGGAATTTGAACGTGAGAAATCCGGCCTCACCTCAAGTGATGCAACCCCTTCGGAGGGGAACCCAGAAATTGAAAATAAAGAACAATTCCTTGACGTCGATATTGAGGTCGAGGCTGCTCATGATGAAGTCATTGTGAAGGTTAGCTGCCCATTAGAGTCACACCCTGCATCAAGAGTTATCAAGGCAATGAAAGATGCTCAGATCAATGTTGTTGATTCAAAACTCTCTGAAGCAAATGATAAAGTTTTGCACACATTTGTCATCAAGTCTCCCGGATCCGAGCAGTTGACGAAGGAACAGTTTATAGCTGCATTTTCCCGGGACTCCACTTCGTTACATCCTTTATCAACAGTTGGGTAG 1857 45.5 MKIEDGLRSVGGMDEDKTVVAAVLGTRAFNYLMACSVSNENLFMAVRNDENLQNKLSDLVERPNASNFSWNYAIFWQLSHSKSGEWVLGWGDGSCRDPRDGEETESTQILSLRLEDESQQRMKKRALQKLHTLFGGSDEDNYALGLDRLTDTEMFFLASMYFSFPRGEGGPGKCLASGKHTWLSDVLNLPSEYCVRSYLAKSAGIRTIVLVPTDVGVVELGSVRSVNESLELVQLIRSLFSSQLSLDRVRSSAAMSMMAERKDESTPFASLGIAERGEGGGGIPKVFGQTLNSGNMGRSHFREKLAVRKMDERSWEACANGGRIQFQSPRNGIRSPNLAHVHGLKQGNPAEIYVSPTPPVNNNHEQQLVNGVRDEFCLNPYQSQKLAQMQIDFSAATSRPSVINRVIADTEHSDVEPQCKEEGPGTDERRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAYINELQEKVKAMEFEREKSGLTSSDATPSEGNPEIENKEQFLDVDIEVEAAHDEVIVKVSCPLESHPASRVIKAMKDAQINVVDSKLSEANDKVLHTFVIKSPGSEQLTKEQFIAAFSRDSTSLHPLSTVG 618
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1588627 1590483 + CrPI670011_05g001490.1 Cre05g0149 496662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g0149 618 SMART finulus 449 498 IPR011598 GO:0046983(InterPro)
Cre05g0149 618 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 446 504 IPR036638 GO:0046983(InterPro)
Cre05g0149 618 CDD bHLH_AtAIB_like 440 513 - -
Cre05g0149 618 FunFam Transcription factor bHLH13 436 509 - -
Cre05g0149 618 PANTHER MYC 39 607 IPR045084 GO:0000976(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006355(PANTHER)
Cre05g0149 618 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 443 492 IPR011598 GO:0046983(InterPro)
Cre05g0149 618 MobiDBLite consensus disorder prediction 503 523 - -
Cre05g0149 618 Gene3D - 436 507 IPR036638 GO:0046983(InterPro)
Cre05g0149 618 MobiDBLite consensus disorder prediction 409 454 - -
Cre05g0149 618 MobiDBLite consensus disorder prediction 408 454 - -
Cre05g0149 618 Pfam Helix-loop-helix DNA-binding domain 447 493 IPR011598 GO:0046983(InterPro)
Cre05g0149 618 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 52 240 IPR025610 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1425 Cre-Chr4:33064871 Cre05g0149 Cre-Chr5:1588627 2.40E-12 dispersed
Cre05g0149 Cre-Chr5:1588627 Cre07g0444 Cre-Chr7:2204212 8.90E-73 dispersed
Cre05g0149 Cre-Chr5:1588627 Cre10g0420 Cre-Chr10:3081178 3.20E-62 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53583 PF14215 bHLH-MYC_N 4.50E-54 CL0161 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g0149 - - - 0.0