Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g0163 ATGCCCAAGTTAATGGGTTCTCAGATACCAAAATCTGTAAGGTTTGGACATCCAACTGCTGGAGGTTACCAATACAGAAGCAGACTGTCTCCAGGGTCAATATTGGAAAGCATAGAGAGAAAATTTTCAAGTGTTTCTAATAGCTTTAGAAGAATAATAACACACTTAGGCTTCAAGCATCCAGGTGATCAGTCAGTAAAGAAACCAAAATTTTGGAAGAAAATTCTTGATCCACATAAGCCATTTCTTCAGCAATGGAACAAGATATTTGTGCTCTCATCTGTCATAGCAGTAGCTGTGGATCCTCTCTTCTTTTACGTCCCAGTGATCGATGCACAACGTCAATGCCTAACCATGGACCGACAACTTATGATCATTGCTTGTGTTCTTCGTTCATTCATCGATTTATTTTATCTACTTCACATGATCTTTGAATTTCGAACCGGTTTTCTTCCCCCTTCTTTACCGGTTTTTGGAAGTGGTGAATTAATCAAAGATCCAGCAAAAATAGCAAAGAAATATCTCTTCTCAAACTTCTTGATCGATATCTTATCCATTCTCCCACTACCTCAGCTTTTGGTATTAGCAATCGTACCTGCAGCGAAAGGCTCGACTGCCTTGAAGACAAAGAACGTCGTGAAGACTGCAGTTCTTTTGCAATATGTTCCAAGACTTCTCCGAATTTATCCACTATACAGAGAAGTAACCAGAACTTCTGGCATACTGACAGAAACAGCCTGGAGTGGAGCTGCCTTCAATCTCCTCATTTATATGCAAGCTAGTCATGTAGTTGGTGCCATTTGGTATTTGTTATCAATAGAACGACAAGCCAAATGCTGGCTCCAAGCATGCAGCAAAGATGAATGTATTGACAATTTTCTGTACTGTGGAGATCGTAAAAAACAAATCTCCCAGTCTATAAATGAGTTTTGCTCTCCTAAAGAGTCTGAAGATGGAAAGACCTTCGAGTTTGGGATGTATGTTGAAGCCCTCAAGTTTAACTTAACCGGGACGACGAGTTTTCGCCGCAAATTCTGCTATTCCTTCTGGTGGGCTCTGCGAAATGTCGGCTCTAGCGGACAAAACCTTGATGTAGGCAATTACATGGGGGAGGTTTTTTTTGCTGTCTTCATTGCCATCCTTGGTTTGGTTTTATTCGCGTTACTCATTAGCAATATTCAGAAATATCTGCAGTCAACAACTGTTAAAATAGAGCAGATGAGAATTAACCGAAGAGACGCTGAGCATTGGATGGCACATCGTATGCTCCCAGAGGGGTTGAGGCAGCGTATTCGACGATATGATCAGTACAAATGGCAGCTAAACAGGGGAGTTAAGGAAGAGGAACTCATCAGTAACCTTCCTAAAGACCTCAGAAGAGACATCAAACGCCACCTTTGCTTGGCCCATCTTAAGAAAGTGCCACTTTTTAACAGCATGGATAAACAACTGTTGGACGCAATGTGCGAATATCTCAAGCCTGTGTTATTCACAGAGAAGAGCTTCATTCTGCAAGAGGGCGACCCAATTGATATGATGCTATTTATTATGAAAGGAAAGCTGGCTACCATTATTACTTGTGATTGGAAAAACGACCCGTACTCGGCCACGCTTAATGCTGGTGACTTCTGTGGCGAAGAGCTAGTTCAATGGGCAATGGATCCCACCTCCACCACTTCTCTTCCTATTTCACAAAGAACAGTTAAAACTCTAACTGAGGTTGAAGCCTTTTCTCTAAAGGCTAATGAGCTGAAATCTGTAACTAGTCAGTTCCACTTTCAGCGCCTTAATAACAAGCAATTCCAACGCTCAGTGAGGTTCTACTCTCATCAATGGAAAGTTTGGGCAGCCTACAAAATACAAGAAGCTTGGCATGATTACCGCGAAAGAAGGCGGAGAGGGGGTGGAGATGGCAGGTTTCAAGATGCATTAGCTAAAACAATTGGCGCCTCGGCGAGCTTTAGTGCCACTCTGTATGCATCCATATTCATATCCCATCTACTGCAAGCTGTGCAGCGAGATCAACACCAGCAAACTGCCCAAGTCACACGAGCGATGACACTACCGCCGCCTCCGAAGCCAGACGATGAGCAAGACAAGCCAAATTTCACCATCTTGGATCTTTAA 2127 42.78 MPKLMGSQIPKSVRFGHPTAGGYQYRSRLSPGSILESIERKFSSVSNSFRRIITHLGFKHPGDQSVKKPKFWKKILDPHKPFLQQWNKIFVLSSVIAVAVDPLFFYVPVIDAQRQCLTMDRQLMIIACVLRSFIDLFYLLHMIFEFRTGFLPPSLPVFGSGELIKDPAKIAKKYLFSNFLIDILSILPLPQLLVLAIVPAAKGSTALKTKNVVKTAVLLQYVPRLLRIYPLYREVTRTSGILTETAWSGAAFNLLIYMQASHVVGAIWYLLSIERQAKCWLQACSKDECIDNFLYCGDRKKQISQSINEFCSPKESEDGKTFEFGMYVEALKFNLTGTTSFRRKFCYSFWWALRNVGSSGQNLDVGNYMGEVFFAVFIAILGLVLFALLISNIQKYLQSTTVKIEQMRINRRDAEHWMAHRMLPEGLRQRIRRYDQYKWQLNRGVKEEELISNLPKDLRRDIKRHLCLAHLKKVPLFNSMDKQLLDAMCEYLKPVLFTEKSFILQEGDPIDMMLFIMKGKLATIITCDWKNDPYSATLNAGDFCGEELVQWAMDPTSTTSLPISQRTVKTLTEVEAFSLKANELKSVTSQFHFQRLNNKQFQRSVRFYSHQWKVWAAYKIQEAWHDYRERRRRGGGDGRFQDALAKTIGASASFSATLYASIFISHLLQAVQRDQHQQTAQVTRAMTLPPPPKPDDEQDKPNFTILDL 708
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1658782 1662301 - CrPI670011_05g001630.1 Cre05g0163 496676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g0163 708 Gene3D Helix hairpin bin 403 467 - -
Cre05g0163 708 ProSiteProfiles cAMP/cGMP binding motif profile. 476 559 IPR000595 -
Cre05g0163 708 MobiDBLite consensus disorder prediction 693 708 - -
Cre05g0163 708 SUPERFAMILY cAMP-binding domain-like 406 592 IPR018490 -
Cre05g0163 708 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 65 670 - -
Cre05g0163 708 FunFam Cyclic nucleotide-gated ion channel 1 403 467 - -
Cre05g0163 708 Gene3D Jelly Rolls 474 592 IPR014710 -
Cre05g0163 708 Gene3D - 89 400 - -
Cre05g0163 708 SMART cnmp_10 476 606 IPR000595 -
Cre05g0163 708 SUPERFAMILY Voltage-gated potassium channels 77 398 - -
Cre05g0163 708 MobiDBLite consensus disorder prediction 678 708 - -
Cre05g0163 708 CDD CAP_ED 476 608 IPR000595 -
Cre05g0163 708 Pfam Ion transport protein 92 401 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g0163 Cre-Chr5:1658782 Cre10g1605 Cre-Chr10:30159402 5.30E-162 dispersed
Cre05g0163 Cre-Chr5:1658782 Cre05g0165 Cre-Chr5:1666185 1.80E-247 proximal
Cre05g0163 Cre-Chr5:1658782 Cre05g0164 Cre-Chr5:1665106 2.00E-52 tandem
Cre05g0163 Cre-Chr5:1658782 Cre09g2458 Cre-Chr9:43895116 1.70E-192 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g0163 K05391 - csv:101206492 1152.89