Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g0165 ATGTCTGTAGCGACACAGGGAGTGGGAGAGAGCAAAGGAGTTCTGTGTACAAAATGCCTCTACAACTCCAACGAGGTAGCCAAAAACAGCACCAGAGAAACCAGAGACCCCCCCTTTCTTGTTACATTGGCTTTAACAATATTTGAGGGAGTTTTGGGTCATTCCTCTCTCCCAGGACCTCCCCTTTCCAGCCCTTCCAGTTCCCATTCAAAAACCTACCCAAATAAAGAGGCACAGTTTAGCCCCACAATCTGGATAGCGATGTCCAAGTTTATGGTTTCCCAGATACCAAAATCTGTAAGGTTTGGACATCCAACTTCTGATTTTCATGACAGATATGGAGGTTACCAAAGCCGAAGAGGACCGTCTCCAGGGTCAATATTGACAAGCATAAAGAGCAGAATTTCAAGTGTTTCTGATAGCTTTAGAAGAATAATAACATGCTTAGGCTTCAAGCATCCAGGTGATCAGTCGGGAAAGAAACCAAAATTTTGGAAGAAAATTCTTGATCCACATAAGCCATTTCTTCAGCAATGGAACAAGATATTTGTGCTCTCCTCTGTCATAGTGGTAGCTGTGGATCCTCTCTTCTTTTACATCCCAGTGATCGATGAAAACCGTTATTGCCTAACCATGGACCAACAACTTATGATCATTGCTTGTGTTCTTCGTACACTCATTGACTTATTTTATCAGATTCACATAATCTTTGAATTTCGAACCGGTTTTCTTCCCCCTTCTTTACCGGTTTTTGGAAGTGGTGAACTAAAGAAAGATCCAGCAGATATAGTAAAGAAATATCTCTCCTCAAACTTCTTGATCGATATCTTATCCATTCTCCCACTGCCTCAGCTTTTGGTATTAGCAATCGTAACTGCAGCGAAACGCCCGATTCTACTGAAGACAAAGGACGTCGTGAAGATTGCAGTTCTTTTGCAATATATTCCAAGACTACTCCGAATTTATCCACTGTATAGAGAAGTAACCAGAACTTCTGGCATACTGACAGAAACAGCCTGGAGTGGAGCTGCCTTCAATCTCCTCATTTATATGCAAGCTAGTCATGTAGTCGGTGCCATTTGGTATTCGTTATCAGTAGAACGACATGCGAAATGCTGGTTCAAGAATGCAAGGAATATAACTTCTGAAGATGGCAAGAACTTCAACTTTGGGATGTTTGGTGAAGCCCTTAAGTTCCAATTGACCACGACGACGAATTTTCGCCGGAAATTATTCTATTCCTTTTGGTGGGCTCTGCAAAATGTCAGCTCTAGTGGACAAAACCTTAAAGTAAGCAATTACATGGGGGAGGTTTTTTTTGCTGTCTTCATTCCCATCCTTGGTTTGGTTTTATTTGCGTTACTCATTAGCAATATTCAGAAATATCTGCAGTTAACAACTGTTAAAATAGAGCAGATGAGAATTAACCGAAGAGACGCCGAGCATTGGATGGCACATCGTATGCTCCCAGAGGAGTTGAGGCAGCGTATACGACGATATGATCAGTATAAATGGCAGCTAAATAGGGGAGTTAAGGAAGAGGAACTCATTAGTAACCTTCCTAAAGACCTCAGGAGGGACATCAAACACCACCTTTGCTTGGCCCATCTTAAGAAAGTGCCGCTTTTTAGTAGCATGGATAAACAACTGTTGGACTCGATGCGTGAATATCTCCAGCCTGTGTTATTCACAAAAAGAGCTTCATTCTGCAAGAGCGACCAGTACGTGGTCACTCTTAACGCTGGTGACTTTTGTGGCAAAGAGCTAGTTCAATGGGCAATGAATACCACCTCCACTTCTCTTCCCATTTCAAACAGAACAATTAATACTCTAATTGAGGTTGAAGCCTTTGCTCTAAAGGCTAATGAGCTGAAATTTGTAACTAGACAGTACCATTTCCAGCGCCTCAATAGCACGCAATTCCAACTCTCAGTGAGGCATGTTCTTACTGAACTTACACATCAATTGTTCTACCACGAGCTTCAGTGCCACTCTGTATGCATCTATATTCATATCCCATCTACTGCAAGCAGTGAAGCGAGATCAACCCCAGCTAACTGCCCAAGTCACACGAGTGATGACACTATTGGTGCCTCCAAAGCCAGACGATGTGCAAGACAAGCCAAACTTCACCATCTTGGATCTTTAAAATCTAAGCAGCACATAAGAAAGGCACTATCAGAGCAACAGTTTACCCCCACAATTTGTTTACTGATGTCCAAATTTAAGGGTTTCTGGAAACCGAAACTTGAAAGGCTTCAATATCTGTATCCACCTGGTTTCTTTGTCATTTATGGAGCTACTACCCAAAAAGAGAAACGGCAACGAAAGAGATGGCCAATATTGGAGAGAATGGAGAGAAGATTTTCTATTGTCTGGAAGAAAACTCTTGATCCACAGGCGCCATTCCTTCAGCAATGCAACAAAATATTTGTGGTGTTCTGTATCATAGCAGTAGCTGCGGACCCTCTCTTCTTTTACATCCCAGTGTTTGATAGACAACATCAATGCCTAACCATGGACCGACCCCTTATGATCATTGCTTGCCTTGTCTGTTCCTTCGTTGACATATTTTATCTACTTCACATCATCTTTGAATTTCGAACAGGTTTTCTGCCTTCTTATGTACAAGCACCAGGAAGTGCTGAATTAATTCGAGATGTAGCAGATATAACAAAGAGATACCTCTCTTCAAATTTTACCATTGATATCTTATCCATTCTCCCACTGCCTCAGCTTTTGGTACTAGTTATCATACCTGCATTGAAAGGCTCGATTCCATTGAAGACAAAGAAGTTTGTAAAGATTGCAGTTCTTCTGCAATACATGCCAAGGCTTCTCCGAATTTATCCACTATACAAAGAAGTAGTTAGAACTTCTGGCATACTAACAGAAAGAGCCTGGAGTGGAGCTGCCTTCAATCTCCTTATTTATATGCAAGCTAGTCATGTAGTTGGTGCCCTTTGCAATTTTCTGTATTGTGGAGATCCCAACGGACAGGCTTACCCGTTTATAGATGCATATTGCTCTCATAAAGAGTCTGAAGGTGACAATGCCTTCGAGTTTGGGATATATGTTGAAGCCTTTAAGTTCCATTTAACCGTCGCCGCAAATCCATTCATTCTTTCTGGTGGGCTCTGCGAAGTGTCAGCTCTAGTGGACAAAACCTCGAACAACATTCAGAAATATCTGCAGTCAAGTAATGCTAGAGTAGAGCAGATGAGAATTAACTGA 3234 41.81 MSVATQGVGESKGVLCTKCLYNSNEVAKNSTRETRDPPFLVTLALTIFEGVLGHSSLPGPPLSSPSSSHSKTYPNKEAQFSPTIWIAMSKFMVSQIPKSVRFGHPTSDFHDRYGGYQSRRGPSPGSILTSIKSRISSVSDSFRRIITCLGFKHPGDQSGKKPKFWKKILDPHKPFLQQWNKIFVLSSVIVVAVDPLFFYIPVIDENRYCLTMDQQLMIIACVLRTLIDLFYQIHIIFEFRTGFLPPSLPVFGSGELKKDPADIVKKYLSSNFLIDILSILPLPQLLVLAIVTAAKRPILLKTKDVVKIAVLLQYIPRLLRIYPLYREVTRTSGILTETAWSGAAFNLLIYMQASHVVGAIWYSLSVERHAKCWFKNARNITSEDGKNFNFGMFGEALKFQLTTTTNFRRKLFYSFWWALQNVSSSGQNLKVSNYMGEVFFAVFIPILGLVLFALLISNIQKYLQLTTVKIEQMRINRRDAEHWMAHRMLPEELRQRIRRYDQYKWQLNRGVKEEELISNLPKDLRRDIKHHLCLAHLKKVPLFSSMDKQLLDSMREYLQPVLFTKRASFCKSDQYVVTLNAGDFCGKELVQWAMNTTSTSLPISNRTINTLIEVEAFALKANELKFVTRQYHFQRLNSTQFQLSVRHVLTELTHQLFYHELQCHSVCIYIHIPSTASSEARSTPANCPSHTSDDTIGASKARRCARQAKLHHLGSLKSKQHIRKALSEQQFTPTICLLMSKFKGFWKPKLERLQYLYPPGFFVIYGATTQKEKRQRKRWPILERMERRFSIVWKKTLDPQAPFLQQCNKIFVVFCIIAVAADPLFFYIPVFDRQHQCLTMDRPLMIIACLVCSFVDIFYLLHIIFEFRTGFLPSYVQAPGSAELIRDVADITKRYLSSNFTIDILSILPLPQLLVLVIIPALKGSIPLKTKKFVKIAVLLQYMPRLLRIYPLYKEVVRTSGILTERAWSGAAFNLLIYMQASHVVGALCNFLYCGDPNGQAYPFIDAYCSHKESEGDNAFEFGIYVEAFKFHLTVAANPFILSGGLCEVSALVDKTSNNIQKYLQSSNARVEQMRIN 1077
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1666185 1674310 - CrPI670011_05g001650.1 Cre05g0165 496678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g0165 1077 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 577 650 - -
Cre05g0165 1077 SUPERFAMILY Voltage-gated potassium channels 170 464 - -
Cre05g0165 1077 Gene3D Helix hairpin bin 468 533 - -
Cre05g0165 1077 Pfam Ion transport protein 182 466 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre05g0165 1077 SUPERFAMILY Voltage-gated potassium channels 799 996 - -
Cre05g0165 1077 Gene3D Jelly Rolls 567 632 IPR014710 -
Cre05g0165 1077 FunFam Cyclic nucleotide-gated ion channel 1 469 533 - -
Cre05g0165 1077 SUPERFAMILY cAMP-binding domain-like 472 588 IPR018490 -
Cre05g0165 1077 Gene3D - 181 465 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g0165 Cre-Chr5:1666185 Cre09g2458 Cre-Chr9:43895116 7.00E-142 dispersed
Cre05g0163 Cre-Chr5:1658782 Cre05g0165 Cre-Chr5:1666185 1.80E-247 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g0165 K05391 - csv:101206492 800.816