Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre05g0183 | ATGCAGAGGATTCAAGCTGCGGTTTTCGCCATCGAATCAGTTGAGGTGTCCAGTTTGAGCTGTATCTGTAACATGGGAACTAGTGAAGAGGCGAAGTCTGTGAAGACTGAAAAACCATCCTCACCAACACCGGATCAGAATAGTGTGCCGAATTCAGCCAGTATTCATGTTTTTCCTGATTGGGCAGCCATGCAGGCATATTATGGTCCTAGAGTTGCAGTTCCACCATACTACAACTCTGCTGTGGCTTCAGGTCATGCTCCTCACCCTTATATGTGGGCTCCACCACAGATGATTCCTCCATATGGTACTCCTTATGCTGCAATCTATTCTCATGGAGGTGTTTATGCCCATCCTGCAGTTTCTATGGGCCCACATTCACATGGCCCTGGTGTTCCCTCATCACCTGGGGCTGCACCTCCTTTGAGTATTGAAACACCTTCAAAGGTATCTGGAAATAGCAGTCAAGGTTTAATGAAGAAACTGAAAGGTTTCGATGGCCTGGCAATGTCCATAGGCAATGTTAGCACTGAGACTGCTGAAGGGGGAGCTGAGCATGGACAATCAGAGAGTATGGAAACTGAAGGTTCCAGTGATGGAAGTGATGGAACTACTGCTGGGGCAAATCAAACCAAAAGGAAACGAAGCCGTGAGGGAACACCTACCACTGGTAAGGATGCAAAAATTGAGCCACAGGCAAGTCCAGTTACTGCTGCTGAAATGAATGAAAGCTCTAGCAAATTATTGGGCACGACCAAAGCAGCTAATGCGACTGGAAAACTTGGATCTGTGATTTCTCCTGGAATGTCTACTGCATTGGAACTGAGAAATCCTTCCAGTATAAATGCCATGACAAGTCCAACGACGGTTCCACCTTGTTCAGTACTGCCTTCTGAAGTCTGGCTCCAGAATGAAAAAGAGCTAAAACGGGAAAGGAGAAAACAGTCGAATAGAGAATCCGCTAGGAGGTCAAGGTTGAGGAAGCAGGCTGAGACAGAGGAACTAGCTCGTAAAGTTGATTCGCTGACTGCCGAGAATGTCGCTATTCGATCTGAAATAAGTAGATTGTCAGAGAACTCCGAGAAACTTAAGAAAGAAAACTCTACCTTGATGGAAAAGCTTAAAAGCGCTCAATCAGGACGAACAGAAGCATTAGACATGAATGAAAAGAGGATGCAACAACCTGTAAGCACAGAAACCAAAGGACCTGTGAATAAAAGCATTAACGAAGAGAGTATCATCTGCAAGAAAAACTCGAGTTCGGGTGCAAAACTGCGGCAGCTCTTGGATACGAAGCGCGTGATTCACGAGTTGGGTCCGATTCCCGAGTTTGCATCTCACGTGCTTGGTTACCGTGAACCGGGGAAGCCCGGTCTCCGACCGTTTCACAATTCCATGCCCCATCTCTAG | 1410 | 46.67 | MQRIQAAVFAIESVEVSSLSCICNMGTSEEAKSVKTEKPSSPTPDQNSVPNSASIHVFPDWAAMQAYYGPRVAVPPYYNSAVASGHAPHPYMWAPPQMIPPYGTPYAAIYSHGGVYAHPAVSMGPHSHGPGVPSSPGAAPPLSIETPSKVSGNSSQGLMKKLKGFDGLAMSIGNVSTETAEGGAEHGQSESMETEGSSDGSDGTTAGANQTKRKRSREGTPTTGKDAKIEPQASPVTAAEMNESSSKLLGTTKAANATGKLGSVISPGMSTALELRNPSSINAMTSPTTVPPCSVLPSEVWLQNEKELKRERRKQSNRESARRSRLRKQAETEELARKVDSLTAENVAIRSEISRLSENSEKLKKENSTLMEKLKSAQSGRTEALDMNEKRMQQPVSTETKGPVNKSINEESIICKKNSSSGAKLRQLLDTKRVIHELGPIPEFASHVLGYREPGKPGLRPFHNSMPHL | 469 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 1854128 | 1861171 | + | CrPI670011_05g001830.1 | Cre05g0183 | 496696 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre05g0183 | 469 | MobiDBLite | consensus disorder prediction | 37 | 52 | - | - | |
Cre05g0183 | 469 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 312 | 327 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre05g0183 | 469 | MobiDBLite | consensus disorder prediction | 237 | 266 | - | - | |
Cre05g0183 | 469 | PANTHER | G-BOX-BINDING FACTOR 3-RELATED | 38 | 399 | IPR044827 | GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006355(PANTHER)|GO:0043565(PANTHER)|GO:0043565(InterPro) | |
Cre05g0183 | 469 | Coils | Coil | 325 | 380 | - | - | |
Cre05g0183 | 469 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 307 | 370 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre05g0183 | 469 | SUPERFAMILY | Leucine zipper domain | 308 | 364 | IPR046347 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre05g0183 | 469 | Gene3D | - | 308 | 361 | - | - | |
Cre05g0183 | 469 | CDD | bZIP_plant_GBF1 | 310 | 358 | IPR045314 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre05g0183 | 469 | MobiDBLite | consensus disorder prediction | 32 | 52 | - | - | |
Cre05g0183 | 469 | MobiDBLite | consensus disorder prediction | 177 | 210 | - | - | |
Cre05g0183 | 469 | Pfam | Disordered region downstream of MFMR | 156 | 287 | - | - | |
Cre05g0183 | 469 | MobiDBLite | consensus disorder prediction | 359 | 405 | - | - | |
Cre05g0183 | 469 | MobiDBLite | consensus disorder prediction | 125 | 158 | - | - | |
Cre05g0183 | 469 | MobiDBLite | consensus disorder prediction | 391 | 405 | - | - | |
Cre05g0183 | 469 | SMART | brlzneu | 305 | 369 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre05g0183 | 469 | Pfam | bZIP transcription factor | 305 | 367 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre05g0183 | 469 | MobiDBLite | consensus disorder prediction | 177 | 266 | - | - | |
Cre05g0183 | 469 | MobiDBLite | consensus disorder prediction | 304 | 336 | - | - | |
Cre05g0183 | 469 | Pfam | G-box binding protein MFMR | 25 | 121 | IPR012900 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre05g0183 | Cre-Chr5:1854128 | Cre10g0387 | Cre-Chr10:2647396 | 2.60E-24 | dispersed | |
Cre05g0183 | Cre-Chr5:1854128 | Cre09g1104 | Cre-Chr9:11509437 | 2.30E-28 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
53587 | PF16596 | MFMR_assoc | 1.10E-21 | No_clan | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre05g0183 | K09060 | - | csv:101213720 | 715.687 |