Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g0183 ATGCAGAGGATTCAAGCTGCGGTTTTCGCCATCGAATCAGTTGAGGTGTCCAGTTTGAGCTGTATCTGTAACATGGGAACTAGTGAAGAGGCGAAGTCTGTGAAGACTGAAAAACCATCCTCACCAACACCGGATCAGAATAGTGTGCCGAATTCAGCCAGTATTCATGTTTTTCCTGATTGGGCAGCCATGCAGGCATATTATGGTCCTAGAGTTGCAGTTCCACCATACTACAACTCTGCTGTGGCTTCAGGTCATGCTCCTCACCCTTATATGTGGGCTCCACCACAGATGATTCCTCCATATGGTACTCCTTATGCTGCAATCTATTCTCATGGAGGTGTTTATGCCCATCCTGCAGTTTCTATGGGCCCACATTCACATGGCCCTGGTGTTCCCTCATCACCTGGGGCTGCACCTCCTTTGAGTATTGAAACACCTTCAAAGGTATCTGGAAATAGCAGTCAAGGTTTAATGAAGAAACTGAAAGGTTTCGATGGCCTGGCAATGTCCATAGGCAATGTTAGCACTGAGACTGCTGAAGGGGGAGCTGAGCATGGACAATCAGAGAGTATGGAAACTGAAGGTTCCAGTGATGGAAGTGATGGAACTACTGCTGGGGCAAATCAAACCAAAAGGAAACGAAGCCGTGAGGGAACACCTACCACTGGTAAGGATGCAAAAATTGAGCCACAGGCAAGTCCAGTTACTGCTGCTGAAATGAATGAAAGCTCTAGCAAATTATTGGGCACGACCAAAGCAGCTAATGCGACTGGAAAACTTGGATCTGTGATTTCTCCTGGAATGTCTACTGCATTGGAACTGAGAAATCCTTCCAGTATAAATGCCATGACAAGTCCAACGACGGTTCCACCTTGTTCAGTACTGCCTTCTGAAGTCTGGCTCCAGAATGAAAAAGAGCTAAAACGGGAAAGGAGAAAACAGTCGAATAGAGAATCCGCTAGGAGGTCAAGGTTGAGGAAGCAGGCTGAGACAGAGGAACTAGCTCGTAAAGTTGATTCGCTGACTGCCGAGAATGTCGCTATTCGATCTGAAATAAGTAGATTGTCAGAGAACTCCGAGAAACTTAAGAAAGAAAACTCTACCTTGATGGAAAAGCTTAAAAGCGCTCAATCAGGACGAACAGAAGCATTAGACATGAATGAAAAGAGGATGCAACAACCTGTAAGCACAGAAACCAAAGGACCTGTGAATAAAAGCATTAACGAAGAGAGTATCATCTGCAAGAAAAACTCGAGTTCGGGTGCAAAACTGCGGCAGCTCTTGGATACGAAGCGCGTGATTCACGAGTTGGGTCCGATTCCCGAGTTTGCATCTCACGTGCTTGGTTACCGTGAACCGGGGAAGCCCGGTCTCCGACCGTTTCACAATTCCATGCCCCATCTCTAG 1410 46.67 MQRIQAAVFAIESVEVSSLSCICNMGTSEEAKSVKTEKPSSPTPDQNSVPNSASIHVFPDWAAMQAYYGPRVAVPPYYNSAVASGHAPHPYMWAPPQMIPPYGTPYAAIYSHGGVYAHPAVSMGPHSHGPGVPSSPGAAPPLSIETPSKVSGNSSQGLMKKLKGFDGLAMSIGNVSTETAEGGAEHGQSESMETEGSSDGSDGTTAGANQTKRKRSREGTPTTGKDAKIEPQASPVTAAEMNESSSKLLGTTKAANATGKLGSVISPGMSTALELRNPSSINAMTSPTTVPPCSVLPSEVWLQNEKELKRERRKQSNRESARRSRLRKQAETEELARKVDSLTAENVAIRSEISRLSENSEKLKKENSTLMEKLKSAQSGRTEALDMNEKRMQQPVSTETKGPVNKSINEESIICKKNSSSGAKLRQLLDTKRVIHELGPIPEFASHVLGYREPGKPGLRPFHNSMPHL 469
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1854128 1861171 + CrPI670011_05g001830.1 Cre05g0183 496696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g0183 469 MobiDBLite consensus disorder prediction 37 52 - -
Cre05g0183 469 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 312 327 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g0183 469 MobiDBLite consensus disorder prediction 237 266 - -
Cre05g0183 469 PANTHER G-BOX-BINDING FACTOR 3-RELATED 38 399 IPR044827 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006355(PANTHER)|GO:0043565(PANTHER)|GO:0043565(InterPro)
Cre05g0183 469 Coils Coil 325 380 - -
Cre05g0183 469 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 307 370 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g0183 469 SUPERFAMILY Leucine zipper domain 308 364 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g0183 469 Gene3D - 308 361 - -
Cre05g0183 469 CDD bZIP_plant_GBF1 310 358 IPR045314 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g0183 469 MobiDBLite consensus disorder prediction 32 52 - -
Cre05g0183 469 MobiDBLite consensus disorder prediction 177 210 - -
Cre05g0183 469 Pfam Disordered region downstream of MFMR 156 287 - -
Cre05g0183 469 MobiDBLite consensus disorder prediction 359 405 - -
Cre05g0183 469 MobiDBLite consensus disorder prediction 125 158 - -
Cre05g0183 469 MobiDBLite consensus disorder prediction 391 405 - -
Cre05g0183 469 SMART brlzneu 305 369 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g0183 469 Pfam bZIP transcription factor 305 367 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g0183 469 MobiDBLite consensus disorder prediction 177 266 - -
Cre05g0183 469 MobiDBLite consensus disorder prediction 304 336 - -
Cre05g0183 469 Pfam G-box binding protein MFMR 25 121 IPR012900 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g0183 Cre-Chr5:1854128 Cre10g0387 Cre-Chr10:2647396 2.60E-24 dispersed
Cre05g0183 Cre-Chr5:1854128 Cre09g1104 Cre-Chr9:11509437 2.30E-28 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53587 PF16596 MFMR_assoc 1.10E-21 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g0183 K09060 - csv:101213720 715.687