Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g0206 ATGGAAGTCGATTGGGATCTTCACGCCGTCGTCAGAGGCTACTCCGCCGTGCCCTCCGCCGCCACCATTATTCCCTCTTCTTCTTCTTCTTCTTCTTCTGTTTCTTCGTCTGCCAATAACTCTATTCCTTTTTCTTTTACCAGAGACCTGACCAACCAAACAAAAAGTCATTTCTTCTCCCTTCAAGATCCATTTCAACCCCCTAATTGCAATTCCACTGAAGAATTGCATGAGCTTTTCAAACCCTTTTTCCCCAAATCACAACCCTCTCCTCCGCCGCCGCCTCCACCGCCTGCTCCGCCGCTTCTTTCTTCTCCGGCTGCTAAAATTCTGACCCATCACAAGCAGCATCAGAGCACCCATCTCCCCAAACAGCTCCATTCAACCCCTGTTTCTGCTCCGAGATCCAAACGCCGGAAGAATCAGTTGAAGAAAGTTTGTCAAGTTCCCGCGGAGTCTCTGTCTTCGGATATTTGGGCTTGGCGAAAATATGGGCAAAAACCCATTAAAGGATCTCCATATCCAAGGGGATATTACAGATGTAGCAGTTCGAAGGGTTGCATGGCCCGAAAACAAGTCGAGAGGAACAGATCCGACCCGGGAATGTTCATAGTCACGTACACGGCGGAGCACAACCACCCGGCGCCGACTCACCGGAACTCCCTCGCCGGGTCCACCCGTCAGAAACCCATAACAACGACGCCCACCGCTTCCGGATCTGAAAAACCCGACCCGAAACAGCCGGTTTGCTCGTCGGAAGAACAGAGTACGATCACAGAGAGCAAAGAAGAGAAGGAGGAATTATTAATGGCCGAAGATGAAGAAGACGACGATCTGGGGGTCTCCGATTTGATCGTCAACGACGATTTCTATGTGGGTTTTGAAGAGCTCGACAGCCCAATCACCGATGACTGCTTTTCCGATGAGTTTCCGGCGAGTTTCGACCTTCCATGGTTGTTTAATGGAAATCCAGACAGCGAAATTGTAAAACTCCCCTGTTAA 1002 50.2 MEVDWDLHAVVRGYSAVPSAATIIPSSSSSSSSVSSSANNSIPFSFTRDLTNQTKSHFFSLQDPFQPPNCNSTEELHELFKPFFPKSQPSPPPPPPPPAPPLLSSPAAKILTHHKQHQSTHLPKQLHSTPVSAPRSKRRKNQLKKVCQVPAESLSSDIWAWRKYGQKPIKGSPYPRGYYRCSSSKGCMARKQVERNRSDPGMFIVTYTAEHNHPAPTHRNSLAGSTRQKPITTTPTASGSEKPDPKQPVCSSEEQSTITESKEEKEELLMAEDEEDDDLGVSDLIVNDDFYVGFEELDSPITDDCFSDEFPASFDLPWLFNGNPDSEIVKLPC 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2000037 2001216 - CrPI670011_05g002060.1 Cre05g0206 496719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g0206 333 SUPERFAMILY WRKY DNA-binding domain 153 216 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre05g0206 333 MobiDBLite consensus disorder prediction 210 279 - -
Cre05g0206 333 MobiDBLite consensus disorder prediction 82 148 - -
Cre05g0206 333 Gene3D WRKY domain 139 209 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre05g0206 333 MobiDBLite consensus disorder prediction 85 104 - -
Cre05g0206 333 MobiDBLite consensus disorder prediction 213 241 - -
Cre05g0206 333 FunFam WRKY transcription factor 22 139 209 - -
Cre05g0206 333 SMART WRKY_cls 155 215 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre05g0206 333 ProSiteProfiles WRKY domain profile. 150 216 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre05g0206 333 Pfam WRKY DNA -binding domain 157 214 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre05g0206 333 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 5 267 IPR044810 GO:0000976(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g0206 Cre-Chr5:2000037 Cre09g2417 Cre-Chr9:43577724 6.10E-44 dispersed
Cre05g0203 Cre-Chr5:1981138 Cre05g0206 Cre-Chr5:2000037 2.10E-11 proximal
Cre01g0827 Cre-Chr1:9563380 Cre05g0206 Cre-Chr5:2000037 1.30E-16 transposed
Cre03g1149 Cre-Chr3:11615104 Cre05g0206 Cre-Chr5:2000037 3.60E-38 transposed
Cre04g2145 Cre-Chr4:38593984 Cre05g0206 Cre-Chr5:2000037 1.50E-38 transposed
Cre05g0206 Cre-Chr5:2000037 Cre07g1142 Cre-Chr7:23410872 1.90E-37 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53590 PF03106 WRKY 4.40E-25 CL0274 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g0206 K13425 - csv:101217082 490.73