Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre05g0215 | ATGATTCGCCGGAATCCTCCATTGCTGGGGTTTTCCGATGAGGTCAATGCCCTTAAAACCTCTGATTTGCTTTCCTTAGTTCCTCCTCTTTCCCTCTCTGAATCGATCGAAGAAGAAGAAATGTCAGTTTACGATGCTGCATTTGTGAACACGGAGCTCTCTAAACCCACCTCGATTTTCGGCCTTCGTCTCTGGGTTGTTATCGGAATCTTTGTCGGAGCTCTAATAGTTCTCGCACTGTTTCTTCTTTCACTCTGCCTGACTTCTCGCAAGCGGAACCGCCAGAAGAACCAAATCCGTTTTCCTAAGTCCACAACCCACCATTCTCCTCCTGCCGTTTCCAAAGAGATCCAGGAGATCGTCCACCACGCCGTGCCGGATCATCATCACCATGTTCAGCCGGAAATTCATGTCGAGATCGGGAAATTGGAGCATCGGGTTGTTTTCTCTGATAGACCTTCTAGTGGTGAGAGTAGAGGCACTGTGAGTGAAACTGCTTCTTTTGGATCTGGTACTGTTGGGCCTGAGGTTTCACACCTCGGTTGGGGCAGATGGTATACTCTCAGAGAGCTCGAGGCGGCCACTAATGGCTTGTGTGAAGAGAATGTGATTGGAGAAGGTGGATATGGGATCGTATATTTAGGCATTTTAGGAGATGGTACCAGAATTGCTATCAAGAATCTCTTGAATAACAGGGGTCAAGCTGAGAGGGAATTCAAAGTGGAAGTGGAAGCAATTGGACGCGTAAGACACAAGAATCTTGTCAGGTTGCTGGGATATTGCGTTGAGGGTGCATATAGAATGCTTGTTTATGAGTACGTTAACAATGGCAATTTAGACCAATGGCTTCATGGCGATGTTGGGGATGTGAGCCCTTTGACGTGGGAGATTCGTGTTAACATCATACTTGGCACAGCAAAGGGATTAGCCTATCTTCATGAGGGTCTTGAACCAAAGGTTGTTCATCGTGATGTAAAATCAAGCAACATACTGCTTGATCGTCAGTGGAATGCTAAAGTGTCTGATTTTGGGCTGGCCAAGCTTCTTTGTTCTGAAAGAAGCTATGTGACAACTCGTGTAATGGGCACATTTGGCTATGTTGCACCTGAGTACGCCTGCACTGGAATGTTGAATGAAAAGAGTGACGTTTATAGCTTTGGAATTCTGATTATGGAGATAATTTCCGGGCGGAGCCCTGTTGATTACAGTAGACCTCAAGGAGAGGTAAATTTGGTTGATTGGTTGAAAGCAATGGTTGGTGACAGAAAATCTGAGGAAGTGGTTGACCCCAAGTTGCCGGAGAAGCCTCCTTCCAAAGCTCTCAAGCGTGTTTTGCTGGTTGCTCTTCGTTGTGTCGATCCCGATGCTACAAAGAGGCCGAAAATGGGACACGTCATTCACATGCTCGAGGCAGATAATTTGCTGTCTCATGATGAACACCGGGTTGGTAAGGACTCTTCTCATTCAATTCAAGGCCATCAACATGAGAACCGGGCCGTTCCAAGACGAGTTAACAATCAGAAAGATGAACAAGCATCTTCTAATGTATGTGAAGGTGACAGTGATGGAAACATTCACCATCCAACAAGTTTGGTAGAGACATCTCCAACTGTAACCTCTACTTCATGTGCTCTTTTGCTCTGTTCTGACTGGACCAGATCAGATCAATCCTTTGGTTTATCTGCAACCATACATTTCGAGGACTCTCTGTCAAACTCAAAGCCTTTGGGAGTTCCTTCAAAACCCCCTTATCCAAAGCTTGCTTTTAGAGGTGAAGTTGAAACAAGCACAAAGCACTTGGTAGCTGTAGTTTATACTTGGAAGGTTATCACCGGCTTTATCATCATCAATTCACAAATACAGCTCCTCTCATTGCCACCACGCGAGAATTCAACGTTTTCTGGCTGCGATACTTTCTTAGAAATTTCCTTTGCTTTCCTGTTTCTGAATCTGGCCTCTTGGCTGTTTACTGATGTTAGTAGTTGGTGTATCCAGTTCCTTCACCAGTGTTTCACGTCTGCTCTAGATTGGGAAACCTGA | 2040 | 45.39 | MIRRNPPLLGFSDEVNALKTSDLLSLVPPLSLSESIEEEEMSVYDAAFVNTELSKPTSIFGLRLWVVIGIFVGALIVLALFLLSLCLTSRKRNRQKNQIRFPKSTTHHSPPAVSKEIQEIVHHAVPDHHHHVQPEIHVEIGKLEHRVVFSDRPSSGESRGTVSETASFGSGTVGPEVSHLGWGRWYTLRELEAATNGLCEENVIGEGGYGIVYLGILGDGTRIAIKNLLNNRGQAEREFKVEVEAIGRVRHKNLVRLLGYCVEGAYRMLVYEYVNNGNLDQWLHGDVGDVSPLTWEIRVNIILGTAKGLAYLHEGLEPKVVHRDVKSSNILLDRQWNAKVSDFGLAKLLCSERSYVTTRVMGTFGYVAPEYACTGMLNEKSDVYSFGILIMEIISGRSPVDYSRPQGEVNLVDWLKAMVGDRKSEEVVDPKLPEKPPSKALKRVLLVALRCVDPDATKRPKMGHVIHMLEADNLLSHDEHRVGKDSSHSIQGHQHENRAVPRRVNNQKDEQASSNVCEGDSDGNIHHPTSLVETSPTVTSTSCALLLCSDWTRSDQSFGLSATIHFEDSLSNSKPLGVPSKPPYPKLAFRGEVETSTKHLVAVVYTWKVITGFIIINSQIQLLSLPPRENSTFSGCDTFLEISFAFLFLNLASWLFTDVSSWCIQFLHQCFTSALDWET | 679 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 2097555 | 2105651 | + | CrPI670011_05g002150.1 | Cre05g0215 | 496728 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre05g0215 | 679 | MobiDBLite | consensus disorder prediction | 506 | 520 | - | - | |
Cre05g0215 | 679 | CDD | STKc_IRAK | 204 | 470 | - | - | |
Cre05g0215 | 679 | Gene3D | Phosphorylase Kinase; domain 1 | 180 | 273 | - | - | |
Cre05g0215 | 679 | SMART | serkin_6 | 198 | 469 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cre05g0215 | 679 | ProSiteProfiles | Protein kinase domain profile. | 198 | 475 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cre05g0215 | 679 | Gene3D | Transferase(Phosphotransferase) domain 1 | 274 | 486 | - | - | |
Cre05g0215 | 679 | MobiDBLite | consensus disorder prediction | 480 | 505 | - | - | |
Cre05g0215 | 679 | SUPERFAMILY | Protein kinase-like (PK-like) | 177 | 470 | IPR011009 | - | |
Cre05g0215 | 679 | MobiDBLite | consensus disorder prediction | 154 | 171 | - | - | |
Cre05g0215 | 679 | ProSitePatterns | Protein kinases ATP-binding region signature. | 204 | 226 | IPR017441 | GO:0005524(InterPro) | |
Cre05g0215 | 679 | Pfam | Protein tyrosine and serine/threonine kinase | 201 | 468 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cre05g0215 | 679 | MobiDBLite | consensus disorder prediction | 151 | 171 | - | - | |
Cre05g0215 | 679 | FunFam | Putative receptor-like serine/threonine-protein kinase | 274 | 484 | - | - | |
Cre05g0215 | 679 | MobiDBLite | consensus disorder prediction | 480 | 533 | - | - | |
Cre05g0215 | 679 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 320 | 332 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cre05g0215 | 679 | FunFam | Probable serine/threonine-protein kinase At1g01540 | 178 | 273 | - | - | |
Cre05g0215 | 679 | PANTHER | OS01G0323000 PROTEIN | 47 | 511 | IPR052232 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre04g1317 | Cre-Chr4:31963346 | Cre05g0215 | Cre-Chr5:2097555 | 2.90E-168 | dispersed | |
Cre05g0215 | Cre-Chr5:2097555 | Cre08g1550 | Cre-Chr8:28157548 | 8.60E-170 | dispersed | |
Cre11g1047 | Cre-Chr11:7911601 | Cre05g0215 | Cre-Chr5:2097555 | 7.40E-50 | dispersed | |
Cre02g0870 | Cre-Chr2:5652423 | Cre05g0215 | Cre-Chr5:2097555 | 3.40E-141 | transposed | |
Cre02g2442 | Cre-Chr2:37776443 | Cre05g0215 | Cre-Chr5:2097555 | 5.60E-26 | transposed | |
Cre05g0215 | Cre-Chr5:2097555 | Cre05g1025 | Cre-Chr5:9502154 | 1.30E-72 | wgd | |
Cre05g0215 | Cre-Chr5:2097555 | Cre07g1160 | Cre-Chr7:23876408 | 6.90E-29 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
64106 | PF07714 | PK_Tyr_Ser-Thr | 2.90E-45 | CL0016 | Cre | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre05g0215 | - | - | - | 0.0 |