Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g0215 ATGATTCGCCGGAATCCTCCATTGCTGGGGTTTTCCGATGAGGTCAATGCCCTTAAAACCTCTGATTTGCTTTCCTTAGTTCCTCCTCTTTCCCTCTCTGAATCGATCGAAGAAGAAGAAATGTCAGTTTACGATGCTGCATTTGTGAACACGGAGCTCTCTAAACCCACCTCGATTTTCGGCCTTCGTCTCTGGGTTGTTATCGGAATCTTTGTCGGAGCTCTAATAGTTCTCGCACTGTTTCTTCTTTCACTCTGCCTGACTTCTCGCAAGCGGAACCGCCAGAAGAACCAAATCCGTTTTCCTAAGTCCACAACCCACCATTCTCCTCCTGCCGTTTCCAAAGAGATCCAGGAGATCGTCCACCACGCCGTGCCGGATCATCATCACCATGTTCAGCCGGAAATTCATGTCGAGATCGGGAAATTGGAGCATCGGGTTGTTTTCTCTGATAGACCTTCTAGTGGTGAGAGTAGAGGCACTGTGAGTGAAACTGCTTCTTTTGGATCTGGTACTGTTGGGCCTGAGGTTTCACACCTCGGTTGGGGCAGATGGTATACTCTCAGAGAGCTCGAGGCGGCCACTAATGGCTTGTGTGAAGAGAATGTGATTGGAGAAGGTGGATATGGGATCGTATATTTAGGCATTTTAGGAGATGGTACCAGAATTGCTATCAAGAATCTCTTGAATAACAGGGGTCAAGCTGAGAGGGAATTCAAAGTGGAAGTGGAAGCAATTGGACGCGTAAGACACAAGAATCTTGTCAGGTTGCTGGGATATTGCGTTGAGGGTGCATATAGAATGCTTGTTTATGAGTACGTTAACAATGGCAATTTAGACCAATGGCTTCATGGCGATGTTGGGGATGTGAGCCCTTTGACGTGGGAGATTCGTGTTAACATCATACTTGGCACAGCAAAGGGATTAGCCTATCTTCATGAGGGTCTTGAACCAAAGGTTGTTCATCGTGATGTAAAATCAAGCAACATACTGCTTGATCGTCAGTGGAATGCTAAAGTGTCTGATTTTGGGCTGGCCAAGCTTCTTTGTTCTGAAAGAAGCTATGTGACAACTCGTGTAATGGGCACATTTGGCTATGTTGCACCTGAGTACGCCTGCACTGGAATGTTGAATGAAAAGAGTGACGTTTATAGCTTTGGAATTCTGATTATGGAGATAATTTCCGGGCGGAGCCCTGTTGATTACAGTAGACCTCAAGGAGAGGTAAATTTGGTTGATTGGTTGAAAGCAATGGTTGGTGACAGAAAATCTGAGGAAGTGGTTGACCCCAAGTTGCCGGAGAAGCCTCCTTCCAAAGCTCTCAAGCGTGTTTTGCTGGTTGCTCTTCGTTGTGTCGATCCCGATGCTACAAAGAGGCCGAAAATGGGACACGTCATTCACATGCTCGAGGCAGATAATTTGCTGTCTCATGATGAACACCGGGTTGGTAAGGACTCTTCTCATTCAATTCAAGGCCATCAACATGAGAACCGGGCCGTTCCAAGACGAGTTAACAATCAGAAAGATGAACAAGCATCTTCTAATGTATGTGAAGGTGACAGTGATGGAAACATTCACCATCCAACAAGTTTGGTAGAGACATCTCCAACTGTAACCTCTACTTCATGTGCTCTTTTGCTCTGTTCTGACTGGACCAGATCAGATCAATCCTTTGGTTTATCTGCAACCATACATTTCGAGGACTCTCTGTCAAACTCAAAGCCTTTGGGAGTTCCTTCAAAACCCCCTTATCCAAAGCTTGCTTTTAGAGGTGAAGTTGAAACAAGCACAAAGCACTTGGTAGCTGTAGTTTATACTTGGAAGGTTATCACCGGCTTTATCATCATCAATTCACAAATACAGCTCCTCTCATTGCCACCACGCGAGAATTCAACGTTTTCTGGCTGCGATACTTTCTTAGAAATTTCCTTTGCTTTCCTGTTTCTGAATCTGGCCTCTTGGCTGTTTACTGATGTTAGTAGTTGGTGTATCCAGTTCCTTCACCAGTGTTTCACGTCTGCTCTAGATTGGGAAACCTGA 2040 45.39 MIRRNPPLLGFSDEVNALKTSDLLSLVPPLSLSESIEEEEMSVYDAAFVNTELSKPTSIFGLRLWVVIGIFVGALIVLALFLLSLCLTSRKRNRQKNQIRFPKSTTHHSPPAVSKEIQEIVHHAVPDHHHHVQPEIHVEIGKLEHRVVFSDRPSSGESRGTVSETASFGSGTVGPEVSHLGWGRWYTLRELEAATNGLCEENVIGEGGYGIVYLGILGDGTRIAIKNLLNNRGQAEREFKVEVEAIGRVRHKNLVRLLGYCVEGAYRMLVYEYVNNGNLDQWLHGDVGDVSPLTWEIRVNIILGTAKGLAYLHEGLEPKVVHRDVKSSNILLDRQWNAKVSDFGLAKLLCSERSYVTTRVMGTFGYVAPEYACTGMLNEKSDVYSFGILIMEIISGRSPVDYSRPQGEVNLVDWLKAMVGDRKSEEVVDPKLPEKPPSKALKRVLLVALRCVDPDATKRPKMGHVIHMLEADNLLSHDEHRVGKDSSHSIQGHQHENRAVPRRVNNQKDEQASSNVCEGDSDGNIHHPTSLVETSPTVTSTSCALLLCSDWTRSDQSFGLSATIHFEDSLSNSKPLGVPSKPPYPKLAFRGEVETSTKHLVAVVYTWKVITGFIIINSQIQLLSLPPRENSTFSGCDTFLEISFAFLFLNLASWLFTDVSSWCIQFLHQCFTSALDWET 679
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2097555 2105651 + CrPI670011_05g002150.1 Cre05g0215 496728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g0215 679 MobiDBLite consensus disorder prediction 506 520 - -
Cre05g0215 679 CDD STKc_IRAK 204 470 - -
Cre05g0215 679 Gene3D Phosphorylase Kinase; domain 1 180 273 - -
Cre05g0215 679 SMART serkin_6 198 469 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre05g0215 679 ProSiteProfiles Protein kinase domain profile. 198 475 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre05g0215 679 Gene3D Transferase(Phosphotransferase) domain 1 274 486 - -
Cre05g0215 679 MobiDBLite consensus disorder prediction 480 505 - -
Cre05g0215 679 SUPERFAMILY Protein kinase-like (PK-like) 177 470 IPR011009 -
Cre05g0215 679 MobiDBLite consensus disorder prediction 154 171 - -
Cre05g0215 679 ProSitePatterns Protein kinases ATP-binding region signature. 204 226 IPR017441 GO:0005524(InterPro)
Cre05g0215 679 Pfam Protein tyrosine and serine/threonine kinase 201 468 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre05g0215 679 MobiDBLite consensus disorder prediction 151 171 - -
Cre05g0215 679 FunFam Putative receptor-like serine/threonine-protein kinase 274 484 - -
Cre05g0215 679 MobiDBLite consensus disorder prediction 480 533 - -
Cre05g0215 679 ProSitePatterns Serine/Threonine protein kinases active-site signature. 320 332 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre05g0215 679 FunFam Probable serine/threonine-protein kinase At1g01540 178 273 - -
Cre05g0215 679 PANTHER OS01G0323000 PROTEIN 47 511 IPR052232 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1317 Cre-Chr4:31963346 Cre05g0215 Cre-Chr5:2097555 2.90E-168 dispersed
Cre05g0215 Cre-Chr5:2097555 Cre08g1550 Cre-Chr8:28157548 8.60E-170 dispersed
Cre11g1047 Cre-Chr11:7911601 Cre05g0215 Cre-Chr5:2097555 7.40E-50 dispersed
Cre02g0870 Cre-Chr2:5652423 Cre05g0215 Cre-Chr5:2097555 3.40E-141 transposed
Cre02g2442 Cre-Chr2:37776443 Cre05g0215 Cre-Chr5:2097555 5.60E-26 transposed
Cre05g0215 Cre-Chr5:2097555 Cre05g1025 Cre-Chr5:9502154 1.30E-72 wgd
Cre05g0215 Cre-Chr5:2097555 Cre07g1160 Cre-Chr7:23876408 6.90E-29 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64106 PF07714 PK_Tyr_Ser-Thr 2.90E-45 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g0215 - - - 0.0