Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g0220 ATGTTATTGTTATCGATACCAAAATGCCGAAGAAAATTTTACTTTTGGTTGGTGATTCACTGGGCCGAGCACTTACTTGGTGGGCCGGCCCAACACGAACCCGTTACACACCGACCCATTACCATCTGGAGTTATGGCTCATCCACCGCTGGATGGATCATCTCGCGGCAATGGAATGAACGTATCCGACGGTCTCAAATAAATTTAATCGTCTACGGCTTTGCTCACAATTCACAAGTTGTTGCTTCGAATTTTCTCGGCACAATCCCTTTGACATTGCGTTCCTCGCAAGGCAGGAACTCGTCTGAGGAGCTTTTAGGAGCTACATTTTCACTTCAATCGGATTCGTCCATAACAGATTTAGTATCTCAATTGATAAATCTTGTGTTCCAGTCTGGTTCTTACGGAGTTTACTGGACACCGAGTGTTATTCTAAATAAAAGATACTATAAAGATGAATCTCACAGTTTGAAGAGCGCCTCTGCATGGTGTTTACATATCCCTAGTTATGGTACACGTCGCATTGGTACATTTGTGCCCGCATCGTCGTTGAAATACTGGAACACTATCCCTCTTACTTCTCTTGGAAATCTATCAAATTCTCGATTTTATTCATCGGCGTCGGGTAGGAAAGTTGATATAACTGGAGATACTGGTGTTCCAGCAGCTTCTGCGGGTGTTGAACCGGATATCAGTAACCCCCCTGATCTTGGAAAGGACTTGCTTGAAAGGGTTAAGGATGTCTGGCAGAGTGCCGTAGATGCAACATCTTATACCGGGCAGAAGGCTAAAGAAGTATCGGATGAATTATCTCCGCATGTAGATAAACTCTTCGATTCACATCCATATCTAAAAAATGTGATTGTTCCTGTAAGTATGACCTTGACTGCTACTCTTTTGGCTTGGGTGGTAATGCCCAGGCTTTTGAGGAGATTTCATAAGTATTCAATGCGAAGTCCTGTTGCCATACTATCTGGAAGCATACCCAGTGAGGAAATTCCATATGAGAAAAGTTTTTGGGGTGCACTTGAGGATCCTTTGCGATATCTTGTTACCTTCTTTGCTTTTTCTCAAATTGGCATGATGGTCGCACCAACTGCAGTAGCACCAGAGTTTGTTTCACAGGCATGCAGGGGGGCTGTAATCCTTTCCCTTGTCTGGTTTATTTATCGCTGGAAAACAAATGTGTTATCTCGAGCCTTGGCCACCCAGACTTTTGCAGGGCTTGATCGGGACAGGTTACTTACCATTGATAAAGTTTCATCTGTTGCTTTATTTGCTATTGGATTGATGGCTTTGGCCGAGGCATCTGGTGTGGCCGTTCAATCTATGTTGACAGTTGGTGGGATTGGAGGAGTGGCCACTGCTTTTGCTGCGAGGGACATTCTTGGTAATATTTTGAGTGGCTTAACAATGCAGTTTTCACAACCCTTCTCACTTGGAGATACAATTAAGGCTGGTGCTATTGAAGGTCAAGTTGTGGAAATGGGACTCATGACAACATCACTTTTAAGTGCTGAAAAATTTCCAATCGTTGTTCCAAATTCTCTGTTTTCTAGCCAGGTCATTATAAATAAGTCGCGGGCACAGTGGCGAGCAATCACAAAGAAAATTCCTTTGCAAGTTGATGATTTCAGTACAGTTTCTCAGATATCAGATGGTATTAAGAATATGCTTATGTCTCACCCTAAGGTGTTCTTGGGCAAAGAGGCTCCTTATTGTTTTCTCTCTCAAATTGGAAGTACATATGCAGAATTGACATTCGGTTGTAACCTTAAGAAAATGGGTAAAGAAGAATTGTTCTCTACAGAGCAAGATATTCTCCTTCAGTCAGTACAGATCATTAAGGAGAATGGTGCAACCTTAGGTAGCACCATGTCAGATTGGACGAACAAGTAA 1899 42.71 MLLLSIPKCRRKFYFWLVIHWAEHLLGGPAQHEPVTHRPITIWSYGSSTAGWIISRQWNERIRRSQINLIVYGFAHNSQVVASNFLGTIPLTLRSSQGRNSSEELLGATFSLQSDSSITDLVSQLINLVFQSGSYGVYWTPSVILNKRYYKDESHSLKSASAWCLHIPSYGTRRIGTFVPASSLKYWNTIPLTSLGNLSNSRFYSSASGRKVDITGDTGVPAASAGVEPDISNPPDLGKDLLERVKDVWQSAVDATSYTGQKAKEVSDELSPHVDKLFDSHPYLKNVIVPVSMTLTATLLAWVVMPRLLRRFHKYSMRSPVAILSGSIPSEEIPYEKSFWGALEDPLRYLVTFFAFSQIGMMVAPTAVAPEFVSQACRGAVILSLVWFIYRWKTNVLSRALATQTFAGLDRDRLLTIDKVSSVALFAIGLMALAEASGVAVQSMLTVGGIGGVATAFAARDILGNILSGLTMQFSQPFSLGDTIKAGAIEGQVVEMGLMTTSLLSAEKFPIVVPNSLFSSQVIINKSRAQWRAITKKIPLQVDDFSTVSQISDGIKNMLMSHPKVFLGKEAPYCFLSQIGSTYAELTFGCNLKKMGKEELFSTEQDILLQSVQIIKENGATLGSTMSDWTNK 632
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2124113 2128396 - CrPI670011_05g002200.1 Cre05g0220 496733

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g0220 632 Gene3D - 477 525 IPR023408 -
Cre05g0220 632 Pfam Mechanosensitive ion channel, beta-domain 461 528 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Cre05g0220 632 SUPERFAMILY Sm-like ribonucleoproteins 461 526 IPR010920 -
Cre05g0220 632 Gene3D - 373 475 - -
Cre05g0220 632 PANTHER YNAI-RELATED MECHANOSENSITIVE ION CHANNEL 261 628 - -
Cre05g0220 632 SUPERFAMILY Mechanosensitive channel protein MscS (YggB), transmembrane region 378 460 IPR011014 GO:0016020(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g0220 K22047 - - csv:101220483 880.552
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre05g0220 . 240 630 Mechanosensitive Ion Channel Family AT4G00290 67.0 4.1e-153 538.5
Cre08g1108 . 10 651 Mechanosensitive Ion Channel Family AT5G10490 58.7 3.7e-197 685.3
Cre10g0936 . 89 762 Mechanosensitive Ion Channel Family AT5G10490 55.2 1.9e-190 662.9
Cre08g1108 . 10 631 Mechanosensitive Ion Channel Family AT1G58200 57.6 4.4e-198 688.3
Cre10g0936 . 77 539 Mechanosensitive Ion Channel Family AT1G58200 65.5 8.3e-173 604.4
Cre02g1419 . 43 928 Mechanosensitive Ion Channel Family AT1G53470 55.0 3.1e-260 895.2
Cre02g0740 . 91 952 Mechanosensitive Ion Channel Family AT1G53470 51.1 3.3e-238 822.0
Cre02g1419 . 43 926 Mechanosensitive Ion Channel Family AT3G14810 52.9 4.9e-247 851.3
Cre02g1419 . 43 928 Mechanosensitive Ion Channel Family AT1G78610 58.7 2.6e-280 961.8
Cre02g0740 . 59 952 Mechanosensitive Ion Channel Family AT1G78610 56.1 3.7e-271 931.4
Cre02g1419 . 226 928 Mechanosensitive Ion Channel Family AT2G17000 61.6 2.7e-237 818.9
Cre02g0740 . 266 934 Mechanosensitive Ion Channel Family AT2G17000 58.7 3.2e-222 768.8
Cre02g1419 . 1 675 Mechanosensitive Ion Channel Family AT2G17010 50.6 4.1e-164 575.5
Cre05g1735 . 69 721 Mechanosensitive Ion Channel Family AT5G19520 53.2 1.9e-183 639.8
Cre05g1735 . 64 721 Mechanosensitive Ion Channel Family AT5G12080 58.2 2.4e-202 702.6
Cre03g1794 . 58 750 Mechanosensitive Ion Channel Family AT5G12080 54.0 1.1e-199 693.7
Cre05g1731 . 69 706 Mechanosensitive Ion Channel Family AT5G12080 50.1 4.9e-163 572.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008844 1 0 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 2 1 1 33