Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre05g0232 | ATGATGTTGGAAAACGAGAGATTGCTTCCAAAATCAGTCCTGCTTGAACTTGCATTCCAACAAAATCTGGAGGAGCTCGCGTCTTCAGTTCCACGAAGTTTCTCCTTCAATGAATTGGGGAATCGCGACAATTGGCAAAACAGAGAGCTCAAGAGAGAACGGTGGAGTTCTCACTGTGCTCGTTTTCTGCACTTATTCCTAGAGTTTCTTATCATGGCGGTTGTGAGTGCTATGCTAGCAACTACACCTCGAGCTGGTCCAATTAATTATGCTGAAGCTTCACCAATTATGATCAGCTCAAGCAGAGAGATTGTAGAAGAGCCTGTGGGAGCTATTAGTGAAGATGTAATTTGTGTTGCTGTTGGGAAAGATGTGAAAGAGTGCTTATCAGTTTTGAGATATGCACTAAAATCCTCAGGTGGGAAGAAGATTTGCCTCCTACATATTCATGTCCCCGCACAGATGATTCCATTAATGGGAACCAAGTTTCCAGCAAACTCATTGGAGAAAGAGGAGGTGAGAGCATATCATGAGTTCGAGAAGCAAAATCTGCCGAGGGTCATGAATGAGTATATTCTATACTGTCTTCAAGAAGGGGTTCGTGCCGATAAATTATGTGCTGAAGCTGAGTGTATTGAAAAGGGAATAGTTGATATGATTTCCCTGCACAGGATAAATAAGCTCGTTATGGGAGCAGCTGTAGACAAGAGTTATTCAAGGAGAATGGTGGATCTGAAGTCTAAGAAAGCCATTTACGTGCGTTCACAGGCACCGGCTTTCTGTCACATTGACTTTATTTGCAAGGGGAACCTCATCTGCACCAGGGAGGGTAGATCAGATGGAGCTCAAGTAGAAACCGTCATCTCATCACCACAAACAAGTCCAGACGCTGAATCCTCAGAAATTACCCACCGGAGATCTCAGTCACTGCCACTTGAACAGTTTAATAGCAGGGAAGTCGGAACTCCTTCCAATGTACGTCCTAGAGGGAGATCATTGCTTTTTGACCATTTTAGAGGGAGCACACTAGATCCTTCTTCTCCAGATATTATGAGTGGGGTTCATACTGCAAGAAACTTGGATGTTAACGAGGCTATGGGTGAATGGGGTTTATTAGCAAGGAGAAGTCCTTCTGAAAGGTCAGACAATTCCATACGCTCTCCTCGTGGTGTCATTGATATGGCTCCGTCCCCACTTTCTAGGGTTGAGTTATGTGCAAATGGGCCGGAGGATGGGAAGACCAGTGATTGCCTTTACAATCAATGTGAACGGGTGATGATGGAGGCTGCAAATGCAAGGCGCGAAGCATTTTTAGAGGCAATTGCGCGCAGAAAATCTGAGAAAGAAACTGTTAATGCTCTACACAGGGTGAGAGCTGCAGAAGGGTTATATGCTGAAGAACTGAAACAAAGGAAGGAGGTTGAACAAGAGCTAGCGAAGGAAAAGGCAAAACTTGAAAGTATAAAGGCACAACTAAATGAACTGATGGAAGAACTCCGGATAGCCCAAGATCAGAAGGCAAGTCTAGAGAGAGATCTTTTAGAATCTGATCTAACCGCAAAGGAGTTGGAGCGAAAGATTCTTTCTGCTGTTGAATTGTTACAGAGTTACAAAAGAGAGCGAGAGGAGTTGCAGATACAACGCGACAATGCACTTAGAGAAGCAGAGGAGCTTAGAAAAAATCAATCCACAGGCCAATACCTTCCGCAGTTCTTTACTGAGTTCCCTTTTCGGGAGATCGAGGAAGCAACTAAAAACTTTGATCCCTCCCTGAAGATTGGAGAAGGGGGATATGGAAGTATATTCCGAGGTAACTTGCGTCATACTATGGTGGCTATAAAAATTCTACATTCTGATAGCTCTCAAGGCCCCTCTGAATTTCAACAAGAGGTTAATGTATTGAGTAAGATGAGACATCCCAATCTTGTCACGCTCATTGGTGCCTGTCCTGAAGCTTGGGTTCTCATCTACGAATACCTCTCTAATGGAAGCCTTGAAGATAGGCTAAGCTGCAAGGATAATACTCCACCTTTATCTTGGCAAACACGAATACGTATCGCTACCGAGTTATGCTCGGCCCTTATGTTTCTTCACTCAAGTAAGCCCCACAGCATCATTCATGGTGACTTGAAACCTGCAAATGTATTACTTGATGCAAATTTTGTATGCAAGCTTGGCGACTTTGGAATTTGTCGCTTATTGTCTCGGGGTGAAATGCTAAACAACGAAACACTTGTTTGGAGAACTGACAACCCCAAGGGGACTTTTGCTTACATGGATCCTGAATTCCTTTCATCTGGAGAGCTAACAACAAAGTCAGATGTTTATTCATTCGGGATAATACTTTTGCGGTTATTGACTGGTAGATCTGCAATGGGGATATCAAAGGAAGTGCAATATGCAATGGCAAATGGAAAGTTAGAATCCATTTTGGATCCTTTAGCAGGAGATTGGCCATTCGTGCAGGCTGAACAGATCGCTCGATTGGCATTGAGGTGTTGTGATATGAAGCGAAAGAGCCGCCCTGATCTCATTACTGATGTCTGGAGGGTGCTTGGACCAATGAGGGCTTCCTGTGGTGGCCTATTGTCCGTCCAGCTCGGTTCTGCAGAACACTCACATCCTCCCCCTTATTTTATCTGTCCCATCTTCCAGGAAGTCATGCAAGATCCACATGTAGCTGCAGATGGTTTTACATATGAAGCGGAGGCTGTGAGGGGATGGCTAGACAGTGGACACGATACTTCGCCAATGACAAATCTTAGGCTCGAGCACCGCAACCTCGTCCCAAACCGTGCTCTTCGTTCTGCTATCCAAGAGTGGCTCCAACGGAACTGA | 2838 | 44.68 | MMLENERLLPKSVLLELAFQQNLEELASSVPRSFSFNELGNRDNWQNRELKRERWSSHCARFLHLFLEFLIMAVVSAMLATTPRAGPINYAEASPIMISSSREIVEEPVGAISEDVICVAVGKDVKECLSVLRYALKSSGGKKICLLHIHVPAQMIPLMGTKFPANSLEKEEVRAYHEFEKQNLPRVMNEYILYCLQEGVRADKLCAEAECIEKGIVDMISLHRINKLVMGAAVDKSYSRRMVDLKSKKAIYVRSQAPAFCHIDFICKGNLICTREGRSDGAQVETVISSPQTSPDAESSEITHRRSQSLPLEQFNSREVGTPSNVRPRGRSLLFDHFRGSTLDPSSPDIMSGVHTARNLDVNEAMGEWGLLARRSPSERSDNSIRSPRGVIDMAPSPLSRVELCANGPEDGKTSDCLYNQCERVMMEAANARREAFLEAIARRKSEKETVNALHRVRAAEGLYAEELKQRKEVEQELAKEKAKLESIKAQLNELMEELRIAQDQKASLERDLLESDLTAKELERKILSAVELLQSYKREREELQIQRDNALREAEELRKNQSTGQYLPQFFTEFPFREIEEATKNFDPSLKIGEGGYGSIFRGNLRHTMVAIKILHSDSSQGPSEFQQEVNVLSKMRHPNLVTLIGACPEAWVLIYEYLSNGSLEDRLSCKDNTPPLSWQTRIRIATELCSALMFLHSSKPHSIIHGDLKPANVLLDANFVCKLGDFGICRLLSRGEMLNNETLVWRTDNPKGTFAYMDPEFLSSGELTTKSDVYSFGIILLRLLTGRSAMGISKEVQYAMANGKLESILDPLAGDWPFVQAEQIARLALRCCDMKRKSRPDLITDVWRVLGPMRASCGGLLSVQLGSAEHSHPPPYFICPIFQEVMQDPHVAADGFTYEAEAVRGWLDSGHDTSPMTNLRLEHRNLVPNRALRSAIQEWLQRN | 945 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 2214244 | 2219995 | - | CrPI670011_05g002320.1 | Cre05g0232 | 496745 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre05g0232 | 945 | SMART | serkin_6 | 587 | 852 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cre05g0232 | 945 | FunFam | Adenine nucleotide alpha hydrolase-like domain kinase | 559 | 659 | - | - | |
Cre05g0232 | 945 | ProSiteProfiles | U-box domain profile. | 874 | 945 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Cre05g0232 | 945 | Gene3D | Phosphorylase Kinase; domain 1 | 567 | 659 | - | - | |
Cre05g0232 | 945 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 705 | 717 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cre05g0232 | 945 | SMART | Ubox_2 | 878 | 941 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Cre05g0232 | 945 | PANTHER | OS02G0152300 PROTEIN | 118 | 939 | IPR051348 | - | |
Cre05g0232 | 945 | CDD | RING-Ubox_WDSUB1-like | 876 | 931 | - | - | |
Cre05g0232 | 945 | ProSitePatterns | Protein kinases ATP-binding region signature. | 593 | 614 | IPR017441 | GO:0005524(InterPro) | |
Cre05g0232 | 945 | CDD | STK_N | 116 | 269 | - | - | |
Cre05g0232 | 945 | SUPERFAMILY | RING/U-box | 870 | 945 | - | - | |
Cre05g0232 | 945 | Pfam | Protein kinase domain | 592 | 843 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cre05g0232 | 945 | Coils | Coil | 457 | 561 | - | - | |
Cre05g0232 | 945 | SUPERFAMILY | Protein kinase-like (PK-like) | 561 | 844 | IPR011009 | - | |
Cre05g0232 | 945 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 873 | 945 | IPR013083 | - | |
Cre05g0232 | 945 | ProSiteProfiles | Protein kinase domain profile. | 587 | 879 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cre05g0232 | 945 | Pfam | U-box domain | 876 | 945 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Cre05g0232 | 945 | MobiDBLite | consensus disorder prediction | 283 | 323 | - | - | |
Cre05g0232 | 945 | MobiDBLite | consensus disorder prediction | 283 | 328 | - | - | |
Cre05g0232 | 945 | Gene3D | Transferase(Phosphotransferase) domain 1 | 660 | 858 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre05g0232 | Cre-Chr5:2214244 | Cre09g2062 | Cre-Chr9:39670722 | 2.20E-99 | dispersed | |
Cre07g0572 | Cre-Chr7:3489766 | Cre05g0232 | Cre-Chr5:2214244 | 5.60E-06 | dispersed | |
Cre05g0224 | Cre-Chr5:2146417 | Cre05g0232 | Cre-Chr5:2214244 | 3.20E-45 | proximal | |
Cre02g2323 | Cre-Chr2:36717549 | Cre05g0232 | Cre-Chr5:2214244 | 8.90E-132 | transposed | |
Cre04g1452 | Cre-Chr4:33325600 | Cre05g0232 | Cre-Chr5:2214244 | 8.50E-66 | transposed | |
Cre06g1134 | Cre-Chr6:5215794 | Cre05g0232 | Cre-Chr5:2214244 | 7.20E-232 | transposed | |
Cre11g0808 | Cre-Chr11:5328199 | Cre05g0232 | Cre-Chr5:2214244 | 3.40E-47 | wgd | |
Cre05g0232 | Cre-Chr5:2214244 | Cre05g1006 | Cre-Chr5:9274467 | 9.20E-146 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
64108 | PF00069 | Pkinase | 3.60E-42 | CL0016 | Cre | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre05g0232 | - | - | - | 0.0 |