Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g0232 ATGATGTTGGAAAACGAGAGATTGCTTCCAAAATCAGTCCTGCTTGAACTTGCATTCCAACAAAATCTGGAGGAGCTCGCGTCTTCAGTTCCACGAAGTTTCTCCTTCAATGAATTGGGGAATCGCGACAATTGGCAAAACAGAGAGCTCAAGAGAGAACGGTGGAGTTCTCACTGTGCTCGTTTTCTGCACTTATTCCTAGAGTTTCTTATCATGGCGGTTGTGAGTGCTATGCTAGCAACTACACCTCGAGCTGGTCCAATTAATTATGCTGAAGCTTCACCAATTATGATCAGCTCAAGCAGAGAGATTGTAGAAGAGCCTGTGGGAGCTATTAGTGAAGATGTAATTTGTGTTGCTGTTGGGAAAGATGTGAAAGAGTGCTTATCAGTTTTGAGATATGCACTAAAATCCTCAGGTGGGAAGAAGATTTGCCTCCTACATATTCATGTCCCCGCACAGATGATTCCATTAATGGGAACCAAGTTTCCAGCAAACTCATTGGAGAAAGAGGAGGTGAGAGCATATCATGAGTTCGAGAAGCAAAATCTGCCGAGGGTCATGAATGAGTATATTCTATACTGTCTTCAAGAAGGGGTTCGTGCCGATAAATTATGTGCTGAAGCTGAGTGTATTGAAAAGGGAATAGTTGATATGATTTCCCTGCACAGGATAAATAAGCTCGTTATGGGAGCAGCTGTAGACAAGAGTTATTCAAGGAGAATGGTGGATCTGAAGTCTAAGAAAGCCATTTACGTGCGTTCACAGGCACCGGCTTTCTGTCACATTGACTTTATTTGCAAGGGGAACCTCATCTGCACCAGGGAGGGTAGATCAGATGGAGCTCAAGTAGAAACCGTCATCTCATCACCACAAACAAGTCCAGACGCTGAATCCTCAGAAATTACCCACCGGAGATCTCAGTCACTGCCACTTGAACAGTTTAATAGCAGGGAAGTCGGAACTCCTTCCAATGTACGTCCTAGAGGGAGATCATTGCTTTTTGACCATTTTAGAGGGAGCACACTAGATCCTTCTTCTCCAGATATTATGAGTGGGGTTCATACTGCAAGAAACTTGGATGTTAACGAGGCTATGGGTGAATGGGGTTTATTAGCAAGGAGAAGTCCTTCTGAAAGGTCAGACAATTCCATACGCTCTCCTCGTGGTGTCATTGATATGGCTCCGTCCCCACTTTCTAGGGTTGAGTTATGTGCAAATGGGCCGGAGGATGGGAAGACCAGTGATTGCCTTTACAATCAATGTGAACGGGTGATGATGGAGGCTGCAAATGCAAGGCGCGAAGCATTTTTAGAGGCAATTGCGCGCAGAAAATCTGAGAAAGAAACTGTTAATGCTCTACACAGGGTGAGAGCTGCAGAAGGGTTATATGCTGAAGAACTGAAACAAAGGAAGGAGGTTGAACAAGAGCTAGCGAAGGAAAAGGCAAAACTTGAAAGTATAAAGGCACAACTAAATGAACTGATGGAAGAACTCCGGATAGCCCAAGATCAGAAGGCAAGTCTAGAGAGAGATCTTTTAGAATCTGATCTAACCGCAAAGGAGTTGGAGCGAAAGATTCTTTCTGCTGTTGAATTGTTACAGAGTTACAAAAGAGAGCGAGAGGAGTTGCAGATACAACGCGACAATGCACTTAGAGAAGCAGAGGAGCTTAGAAAAAATCAATCCACAGGCCAATACCTTCCGCAGTTCTTTACTGAGTTCCCTTTTCGGGAGATCGAGGAAGCAACTAAAAACTTTGATCCCTCCCTGAAGATTGGAGAAGGGGGATATGGAAGTATATTCCGAGGTAACTTGCGTCATACTATGGTGGCTATAAAAATTCTACATTCTGATAGCTCTCAAGGCCCCTCTGAATTTCAACAAGAGGTTAATGTATTGAGTAAGATGAGACATCCCAATCTTGTCACGCTCATTGGTGCCTGTCCTGAAGCTTGGGTTCTCATCTACGAATACCTCTCTAATGGAAGCCTTGAAGATAGGCTAAGCTGCAAGGATAATACTCCACCTTTATCTTGGCAAACACGAATACGTATCGCTACCGAGTTATGCTCGGCCCTTATGTTTCTTCACTCAAGTAAGCCCCACAGCATCATTCATGGTGACTTGAAACCTGCAAATGTATTACTTGATGCAAATTTTGTATGCAAGCTTGGCGACTTTGGAATTTGTCGCTTATTGTCTCGGGGTGAAATGCTAAACAACGAAACACTTGTTTGGAGAACTGACAACCCCAAGGGGACTTTTGCTTACATGGATCCTGAATTCCTTTCATCTGGAGAGCTAACAACAAAGTCAGATGTTTATTCATTCGGGATAATACTTTTGCGGTTATTGACTGGTAGATCTGCAATGGGGATATCAAAGGAAGTGCAATATGCAATGGCAAATGGAAAGTTAGAATCCATTTTGGATCCTTTAGCAGGAGATTGGCCATTCGTGCAGGCTGAACAGATCGCTCGATTGGCATTGAGGTGTTGTGATATGAAGCGAAAGAGCCGCCCTGATCTCATTACTGATGTCTGGAGGGTGCTTGGACCAATGAGGGCTTCCTGTGGTGGCCTATTGTCCGTCCAGCTCGGTTCTGCAGAACACTCACATCCTCCCCCTTATTTTATCTGTCCCATCTTCCAGGAAGTCATGCAAGATCCACATGTAGCTGCAGATGGTTTTACATATGAAGCGGAGGCTGTGAGGGGATGGCTAGACAGTGGACACGATACTTCGCCAATGACAAATCTTAGGCTCGAGCACCGCAACCTCGTCCCAAACCGTGCTCTTCGTTCTGCTATCCAAGAGTGGCTCCAACGGAACTGA 2838 44.68 MMLENERLLPKSVLLELAFQQNLEELASSVPRSFSFNELGNRDNWQNRELKRERWSSHCARFLHLFLEFLIMAVVSAMLATTPRAGPINYAEASPIMISSSREIVEEPVGAISEDVICVAVGKDVKECLSVLRYALKSSGGKKICLLHIHVPAQMIPLMGTKFPANSLEKEEVRAYHEFEKQNLPRVMNEYILYCLQEGVRADKLCAEAECIEKGIVDMISLHRINKLVMGAAVDKSYSRRMVDLKSKKAIYVRSQAPAFCHIDFICKGNLICTREGRSDGAQVETVISSPQTSPDAESSEITHRRSQSLPLEQFNSREVGTPSNVRPRGRSLLFDHFRGSTLDPSSPDIMSGVHTARNLDVNEAMGEWGLLARRSPSERSDNSIRSPRGVIDMAPSPLSRVELCANGPEDGKTSDCLYNQCERVMMEAANARREAFLEAIARRKSEKETVNALHRVRAAEGLYAEELKQRKEVEQELAKEKAKLESIKAQLNELMEELRIAQDQKASLERDLLESDLTAKELERKILSAVELLQSYKREREELQIQRDNALREAEELRKNQSTGQYLPQFFTEFPFREIEEATKNFDPSLKIGEGGYGSIFRGNLRHTMVAIKILHSDSSQGPSEFQQEVNVLSKMRHPNLVTLIGACPEAWVLIYEYLSNGSLEDRLSCKDNTPPLSWQTRIRIATELCSALMFLHSSKPHSIIHGDLKPANVLLDANFVCKLGDFGICRLLSRGEMLNNETLVWRTDNPKGTFAYMDPEFLSSGELTTKSDVYSFGIILLRLLTGRSAMGISKEVQYAMANGKLESILDPLAGDWPFVQAEQIARLALRCCDMKRKSRPDLITDVWRVLGPMRASCGGLLSVQLGSAEHSHPPPYFICPIFQEVMQDPHVAADGFTYEAEAVRGWLDSGHDTSPMTNLRLEHRNLVPNRALRSAIQEWLQRN 945
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
5 2214244 2219995 - CrPI670011_05g002320.1 Cre05g0232 496745
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cre05g0232 945 SMART serkin_6 587 852 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre05g0232 945 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 559 659 - -
Cre05g0232 945 ProSiteProfiles U-box domain profile. 874 945 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cre05g0232 945 Gene3D Phosphorylase Kinase; domain 1 567 659 - -
Cre05g0232 945 ProSitePatterns Serine/Threonine protein kinases active-site signature. 705 717 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre05g0232 945 SMART Ubox_2 878 941 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cre05g0232 945 PANTHER OS02G0152300 PROTEIN 118 939 IPR051348 -
Cre05g0232 945 CDD RING-Ubox_WDSUB1-like 876 931 - -
Cre05g0232 945 ProSitePatterns Protein kinases ATP-binding region signature. 593 614 IPR017441 GO:0005524(InterPro)
Cre05g0232 945 CDD STK_N 116 269 - -
Cre05g0232 945 SUPERFAMILY RING/U-box 870 945 - -
Cre05g0232 945 Pfam Protein kinase domain 592 843 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre05g0232 945 Coils Coil 457 561 - -
Cre05g0232 945 SUPERFAMILY Protein kinase-like (PK-like) 561 844 IPR011009 -
Cre05g0232 945 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 873 945 IPR013083 -
Cre05g0232 945 ProSiteProfiles Protein kinase domain profile. 587 879 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre05g0232 945 Pfam U-box domain 876 945 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cre05g0232 945 MobiDBLite consensus disorder prediction 283 323 - -
Cre05g0232 945 MobiDBLite consensus disorder prediction 283 328 - -
Cre05g0232 945 Gene3D Transferase(Phosphotransferase) domain 1 660 858 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g0232 Cre-Chr5:2214244 Cre09g2062 Cre-Chr9:39670722 2.20E-99 dispersed
Cre07g0572 Cre-Chr7:3489766 Cre05g0232 Cre-Chr5:2214244 5.60E-06 dispersed
Cre05g0224 Cre-Chr5:2146417 Cre05g0232 Cre-Chr5:2214244 3.20E-45 proximal
Cre02g2323 Cre-Chr2:36717549 Cre05g0232 Cre-Chr5:2214244 8.90E-132 transposed
Cre04g1452 Cre-Chr4:33325600 Cre05g0232 Cre-Chr5:2214244 8.50E-66 transposed
Cre06g1134 Cre-Chr6:5215794 Cre05g0232 Cre-Chr5:2214244 7.20E-232 transposed
Cre11g0808 Cre-Chr11:5328199 Cre05g0232 Cre-Chr5:2214244 3.40E-47 wgd
Cre05g0232 Cre-Chr5:2214244 Cre05g1006 Cre-Chr5:9274467 9.20E-146 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64108 PF00069 Pkinase 3.60E-42 CL0016 Cre PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g0232 - - - 0.0