Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g0250 ATGGACTCATCTTGTAATATTTGGAAGCAAAATGTGCTATATGGTAGTGAAAGAACATATTGCAAGACGTTGGACCAGTTTGGTCCCAGCAGTGTTCTTAGAAATAGAATTATTGATGCCAAGTTGACTGGCGGTTCAAGAGTAAGTTATAAAGTGCCTAAGAAGAGAAACAGAATTGTAGCATCTAGTAATTCAAATCATTTGAGTCTGGTTTGTGCTAGCAAGTTTGAAGGAGCTTTGCAATATTTTACGCACAAGAGATTCTTGAACTGGAACAATAAGGTAAGTGGAAGAAGGATGGGAATGGTTCATTTAGAGTGTCAAAGCAATGATTCTTTAGCATTTATTGATGGAAATGGCAGAAATATGGAATATGTAAATACTGATGATGAAGGGTCCAGTTCTGGGCCTACCGATGCTGTAGGGTCAGGTGGTTCCAGAGAAGGGGGCGGAGAAGCAGAAACGGTAGAAACGGACGTACCGACTGTGGATGAGCTCAGAGAATTGCTGCAAAAGGCCATGAAAGAACTGGAAGTTGCGAGACTTAACAGCACCATGTTCGAGGAGAAGGCCCAAAAAATATCAGAAGCAGCAATAGCTTTGCAAGATGAAGCAACCCGTGCTTGGAATGATGTGAACTCTACTCTCGATTCTGTACAACAGATAGTGAATGAAGAATATGCTGCCAAAGAAGCCGTTCAAAAAGCAACCATGGCTCTTTCATTAGCAGAGGCAAGGCTTCAGGTGGCAATAGAGTCATTGGAGCTGGCAAAAGGAGGAAACAATTTTCCGGAAACATCAGTAGGTAGTGAGGGGGCAATTGATGGCAAGGAAGAGCAAGAAGTGTTGTTAGTTGCTCAGGAGGACATCAAAGAATGCCGAGCAAATTTGGAAAATTGTGATGCGGAATTGAAGCGCTTAAAGAGTAAAAAGGAAGAGTTACAGAAGGAAGTGGACAGGTTGAATGAGTTAGCTGAAAAAGCACAATTGAATGCGTTGAAAGCTGAAGAAGATGTGGCAACAATAATGACTTTGGCTGAGCAAGCTGTTGCTTTTGAACTTGAGGCTGCCCAAAGGGTTAGTGATGCTGAAATAGCTTTACAGAAAGTGGAGAAATCTTTATCAAGTTCTTTTGTTGACACTTCGGAAGTCACTCAGGGGTCAAATGTTATTGAAGAAGTTGAGAACGAGGATAACAAGGCAGTTCTAGAAATCTCTGGTGACATTGCTGTTGAAATGGATAGAGAGTTGCCACTTAGTGGTGATTCCTTAGCTATCAAATCTCTACCAGGTAGCTTTTCAGATTCTGAAGACTCTGATCAACCATATTACTTAAGTGATAGCGAGAATGGAAAATTGAGTTCAGACTCTGTGAAGGAGGTTGAATCTGGAGCAGAGAAGTCTATTTTGAGTCAAACAAAAAAGCAGGAAACACAGAAGGATTTGACCAGAGAAGGCTCACCTTTAAACTCCCCCAAGGCTCTATTGAAAAAATCTTCTCGCTTTTTTTCAGCATCATTCTTTTCCTTTACAGTTGATGGGACAGAGTTCACTCCAGCATTAGTCTTCCAGGGTCTCCTGGATTTCACTAAAAAGCAATTGCCGAAGCTAATTGTTGGAGCAGTTCTATTAGGAGCAGGGATTGCTATCTTTGCAAATCGAGCAGAAAGGAATTCTCAAATGATTCAGCAGCCTGATGTTGTCACCACTAGCACCGATGAAGTTTCCTTGAACACAAAGCCTTTATTTCAACAATTAAGGAAACTTCCTAAAAGAGTGAAAAAATTAATTTCACAGCTTCCCCATCAAGAGGTGAATGAAGAGGAGGCTTCACTCTTAGACATGTTATGGTTGTTGCTTGCCAGTGTTATATTTGTGCCAACATTTCAGAAACTGCCTGGAGGAAGTCCTGTCCTTGGGTACTTGGCTGCTGGTATTTTAATTGGGCCATATGGTCTCTCCATAATCCGTCACGTGCATGGAACCAAAGCGATTGCTGAATTTGGAGTTGTTTTTCTCCTGTTCAACATTGGCCTGGAGTTATCAGTTGAGAGGCTAAGTTCCATGAAGAAATATGTTTTTGGGTTAGGGTCTGCACAGGTTTTGGTTACAGCTGTAGTGGTTGGCTTGGTTGCTCACATTGTCTGTGGGCAGGCTGGCCCAGCTGCAATTGTCATTGGAAATGGATTGGCTTTGTCATCCACTGCTGTTGTCCTTCAGGTGTTGCAAGAGCGAGGCGAGAGCACTTCACGGCATGGGCGTGCTACATTTTCTGTCTTACTATTCCAGGATTTGGCCGTTGTGGTTTTGCTGATTCTTATACCTCTAATTTCACCTAATTCATCCAAAGGAGGGATTGGTTTTCAAGCCATTGCTGAAGCTCTTGGCCTGGCTGCTGTAAAGGCAATAGTTGCTATTTCTGCCATAATAGCTGGTGGGCGCCTGCTACTACGACCAATTTATAAACAAATAGCTGAAAATCAAAATGCAGAAATATTCTCTGCCAACACACTACTTGTCATTCTGGGAACAAGTCTACTTACTGCCAGGGCTGGACTATCAATGGCGCTGGGTGCTTTTCTAGCAGGTTTACTTCTAGCAGAAACGGAATTCTCCTTGCAGGTTGAATCTGATATTGCTCCATATCGTGGTCTTCTATTGGGTCTCTTCTTCATGACGGTTGGGATGTCTATCGATCCAAAACTTCTTCTTTCTAACTTTCCAGTTATCATGGGGTCTTTGGGACTTCTTATTGGTGGCAAGACTATATTGGTTGCCTTGGTTGGTAGATTTTTTGGTATCTCAATTATATCTGCGTTAAGAGTTGGGCTGCTTCTTGCTCCTGGTGGAGAATTTGCTTTTGTGGCGTTTGGTGAAGCTGTCAATCAGGGTATAATGTCTTCTCAACTATCCTCTTTATTATTTCTTGTTGTGGGACTTTCAATGGCCCTTACACCGTGGCTAGCTGCTGGCGGTCAGTTAATTGCTTCTCGATTTGAGCAGCATGATGTTCGGAGTTTATTACCTGTTGAAAGTGAGACCGACGATTTGCAAGATCATATCATTATTTGCGGATTTGGACGAGTTGGTCAGATAATAGCCCAGCTTCTGTCAGAGCGACTGATTCCCTTTGTTGCCCTTGATGTGAGGAGTGATAGAGTGGCCGTAGGACGTGCCTTAGACCTTCCTGTGTATTTTGGAGATGCAGGAAGTCGAGAGGTTCTACATAAAGTTGGTGCTGAAAGGGCATGTGCTGCTGCAATAACACTGGATACACCGGGTGCAAATTACAGAACTGTTTGGGCTTTGAGCAAGTATTTCCCTAATGTTAAGACTTTTGTTCGAGCTCATGATGTTGATCACGGCCTTAATTTAGAGAAGGCTGGTGCTACTGCGGTAGTTCCCGAGACGTTGGAACCGAGCTTACAGTTGGCTGCTGCTGTTCTTGCTCAGGCTAAACTACCCATGTCAGAGATTGCTGCAACAATTAACGAGTTTAGGTCCCGACATTTATCCGAGCTGACTGAGCTATGTGAAGCCAGTGGAAGTTCGCTCGGATACGGGTTTTCTCGAATCATGAGCAAACCAAAAGTTCAAACCTCTGATTCTTCAGATGAGAATCAAGTCACTGAAGGAACATTGGCCATATGA 3651 43.06 MDSSCNIWKQNVLYGSERTYCKTLDQFGPSSVLRNRIIDAKLTGGSRVSYKVPKKRNRIVASSNSNHLSLVCASKFEGALQYFTHKRFLNWNNKVSGRRMGMVHLECQSNDSLAFIDGNGRNMEYVNTDDEGSSSGPTDAVGSGGSREGGGEAETVETDVPTVDELRELLQKAMKELEVARLNSTMFEEKAQKISEAAIALQDEATRAWNDVNSTLDSVQQIVNEEYAAKEAVQKATMALSLAEARLQVAIESLELAKGGNNFPETSVGSEGAIDGKEEQEVLLVAQEDIKECRANLENCDAELKRLKSKKEELQKEVDRLNELAEKAQLNALKAEEDVATIMTLAEQAVAFELEAAQRVSDAEIALQKVEKSLSSSFVDTSEVTQGSNVIEEVENEDNKAVLEISGDIAVEMDRELPLSGDSLAIKSLPGSFSDSEDSDQPYYLSDSENGKLSSDSVKEVESGAEKSILSQTKKQETQKDLTREGSPLNSPKALLKKSSRFFSASFFSFTVDGTEFTPALVFQGLLDFTKKQLPKLIVGAVLLGAGIAIFANRAERNSQMIQQPDVVTTSTDEVSLNTKPLFQQLRKLPKRVKKLISQLPHQEVNEEEASLLDMLWLLLASVIFVPTFQKLPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAHIVCGQAGPAAIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDLAVVVLLILIPLISPNSSKGGIGFQAIAEALGLAAVKAIVAISAIIAGGRLLLRPIYKQIAENQNAEIFSANTLLVILGTSLLTARAGLSMALGAFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVIMGSLGLLIGGKTILVALVGRFFGISIISALRVGLLLAPGGEFAFVAFGEAVNQGIMSSQLSSLLFLVVGLSMALTPWLAAGGQLIASRFEQHDVRSLLPVESETDDLQDHIIICGFGRVGQIIAQLLSERLIPFVALDVRSDRVAVGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYRTVWALSKYFPNVKTFVRAHDVDHGLNLEKAGATAVVPETLEPSLQLAAAVLAQAKLPMSEIAATINEFRSRHLSELTELCEASGSSLGYGFSRIMSKPKVQTSDSSDENQVTEGTLAI 1216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2380133 2392774 + CrPI670011_05g002500.1 Cre05g0250 496763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g0250 1216 PANTHER K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC 327 1214 - GO:0009507(PANTHER)|GO:0015386(PANTHER)|GO:0016020(PANTHER)
Cre05g0250 1216 Coils Coil 163 183 - -
Cre05g0250 1216 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 1017 1159 IPR036291 -
Cre05g0250 1216 MobiDBLite consensus disorder prediction 126 141 - -
Cre05g0250 1216 Coils Coil 283 338 - -
Cre05g0250 1216 MobiDBLite consensus disorder prediction 124 157 - -
Cre05g0250 1216 Gene3D - 608 996 IPR038770 -
Cre05g0250 1216 FunFam K(+) efflux antiporter 2 chloroplastic 608 994 - -
Cre05g0250 1216 MobiDBLite consensus disorder prediction 431 452 - -
Cre05g0250 1216 ProSiteProfiles RCK N-terminal domain profile. 1020 1142 IPR003148 GO:0006813(InterPro)
Cre05g0250 1216 MobiDBLite consensus disorder prediction 431 492 - -
Cre05g0250 1216 NCBIfam monovalent cation:proton antiporter-2 (CPA2) family protein 619 899 IPR004771 GO:0006812(InterPro)|GO:0008324(InterPro)|GO:0016020(InterPro)
Cre05g0250 1216 FunFam K(+) efflux antiporter 2 chloroplastic 1016 1180 - -
Cre05g0250 1216 Gene3D - 1016 1180 - -
Cre05g0250 1216 Pfam Sodium/hydrogen exchanger family 622 989 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
Cre05g0250 1216 MobiDBLite consensus disorder prediction 1196 1216 - -
Cre05g0250 1216 Pfam TrkA-N domain 1021 1134 IPR003148 GO:0006813(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0791 Cre-Chr1:8568599 Cre05g0250 Cre-Chr5:2380133 5.20E-92 dispersed
Cre05g0250 Cre-Chr5:2380133 Cre05g0933 Cre-Chr5:8505756 1.80E-37 dispersed
Cre05g0250 Cre-Chr5:2380133 Cre08g1640 Cre-Chr8:28909566 3.10E-37 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g0250 K03455 - csv:101213081 2065.04