Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g0260 ATGAGTTTTCTACCACGATTCCACTCTAGCGGCGCCAGCGGGGGAAACGGTGACGGCGACGGCGACGGCGACGGCGAAGGCAGTCTTATGGCCGCTGGTGCTATTGCTCAGCCACATCTTGTTACTCAATCTTCTTTCACTAAATCAATGTTCTCTTCCCCAACGCTCTCTCTCGCTCTCACGAATATCGATGGGCTCGGCGTCGGGGAGATGGTTGCGGCGGATGTTAGGAGGAGGAGTAGAGAGGAAGAGGCAGCGGAGAGTAGATCTGGGAGCGAGAACATGGACGGTGGTTCCGGCGAGGAAGTGGAGGGCGGCGGTGGTAGGAAGAAGAGGAAGAAACGGTACCACCGTCACAGTGTGGAACAGATCCAAGAACTGGAAGCTATGTTTAAAGAGTGTCCTCATCCTGATGAAAAACAACGATTGGAGCTCAGTAGAAGACTCTCTTTAGAAACAAAACAAGTTAAATTCTGGTTTCAAAATCGTCGAACTCAAATGAAGACTCAATTGGAACGCCATGAGAACACATTACTAAGACAAGAGAATGAGAAGCTCCGAACAGAGAACATGGCAATTCGAGAGGCCATGAGGGATCCAATTTGCTCCAACTGCGGTGGACCGGCCATCATCGGAGAAATCTCCATCGAAGAACAGCAACTCCGAATCGAAAATGCCCGATTAAAGGACGAATTGGACCGAGTGTGTGCCCTAGCGGGGAAATTCCTGGGGCGGGCAGCAGTTCCGGTATCGCCGCCATTGGCATCAAGCTCGTGTTTGGAGGAATATGGAGGTGGGATGATGATGATGGAGAGATGCGTGTATTTGGAGATGGGTTTGGCAGCCATGGATGAGGTTGTGAAAATGGCTAATGAGGAAGAGCCATTGTGGGTTAGAGAGAAACTTAATGAAGAAGAATATTTGAGAATGTTCAGTGGGAGTTGTTTTGGGGTTAAACACATTAATAATGGGTTTGTTTTTGAGGCTTCTAGACAAACTGCTCTTGTCTTCCTCAACACTTCTGCTCTCCTTGACACTCTCATGGATCCTGACCGGTGGGTGGAGATGTTTCCGAACCTGGTCGCGACGGCAAGCACCACCGACGTAATCTCTGGTGGCATGGGAGGAACCAGGAACGGAGCTCTCCAGCTGATGCATGCAGAGCTTCAAATTCTGTCTCCCATGGTTCCGGTGAGACAATTAAGCTTCCTCCGCTTCTGTAAGCAGCACGCTGAAGGCGTTTGGGTTGTCGTCGATGTCTCCATCGATCCCATTACCGATACTTCTTCCTCTCCGCCGTGCCGGAGACTCCCCTCCGGCTGCCTCATCCACGAGATGCCCAATGGCTACTCCAAGGTTACTTGGGTTGAGCATTCTGAATACGATGAAAGTTACATTCACGAGCTATACCGGCCCCTCATTCGCTCCGGCCTTGGCTTTGGTGCACGACGGTGGATCGCCACGCTCCAACGCCAATCTGAGTGCCTTGCCGTCCTCTCCACCCCGATAGACTATTCTGGAATATCAACGAATGGGCGGCGGAGCATGGTGAAGCTAGCGCAGCGGATGACGGTGAATTTTTGTGCAGGAATATGTGGGTCGACGATATACAAATGGAACAAGCTAAACACGAGAAATAACAACGTTGGAGAAGATGTGAGAGTGATGACGAGGAAGAGTGTGGAGGATCCCGGGGAGCCACCGGGGACAGTGCTGAGTGCAGCGACGTCGGTGTGGGTGGCGGAAGCGGCGGAGAGAGTGTTTGAGTTTCTTCGGGATGAGCGGCTGAGGAGTGAGTGGGACATTCTGTCCAACGGCGGCCCCATGCAGGAGATGCTTCATATTCCCAAATCCCAACACCATCACCATCCCAACGCCGTCTCTCTCCTCCGTGCCACCTCTCTAAATCCAAATCAGAGCAGCATGCTAATTCTACAAGAGACTTGCACCGATTCATCGGGGTCGCTTGTAGTGTACGCGCCGGTGGACATTCCGGCCATGCAGGCGGTAATGAACGGTGGAGATTCAGCATACGTGGCCTTACTACCGTCGGGGTTCGCGGTGGTTCCGGCGGCGGAGGACGGTGGCGGAGGGAGTCTGTTGACGGTGGCGTTTCAGATACTGGTGAACAGTTTGCCGACGGATAAGTTGACGGTGGAGTCGGTGGAGACGGTGAATAACTTGATTTCGTGTACGGTGCAAAAAATTAAAACCGCTCTCCGGTGTCACGCGCCTTCCACGTGA 2244 52.58 MSFLPRFHSSGASGGNGDGDGDGDGEGSLMAAGAIAQPHLVTQSSFTKSMFSSPTLSLALTNIDGLGVGEMVAADVRRRSREEEAAESRSGSENMDGGSGEEVEGGGGRKKRKKRYHRHSVEQIQELEAMFKECPHPDEKQRLELSRRLSLETKQVKFWFQNRRTQMKTQLERHENTLLRQENEKLRTENMAIREAMRDPICSNCGGPAIIGEISIEEQQLRIENARLKDELDRVCALAGKFLGRAAVPVSPPLASSSCLEEYGGGMMMMERCVYLEMGLAAMDEVVKMANEEEPLWVREKLNEEEYLRMFSGSCFGVKHINNGFVFEASRQTALVFLNTSALLDTLMDPDRWVEMFPNLVATASTTDVISGGMGGTRNGALQLMHAELQILSPMVPVRQLSFLRFCKQHAEGVWVVVDVSIDPITDTSSSPPCRRLPSGCLIHEMPNGYSKVTWVEHSEYDESYIHELYRPLIRSGLGFGARRWIATLQRQSECLAVLSTPIDYSGISTNGRRSMVKLAQRMTVNFCAGICGSTIYKWNKLNTRNNNVGEDVRVMTRKSVEDPGEPPGTVLSAATSVWVAEAAERVFEFLRDERLRSEWDILSNGGPMQEMLHIPKSQHHHHPNAVSLLRATSLNPNQSSMLILQETCTDSSGSLVVYAPVDIPAMQAVMNGGDSAYVALLPSGFAVVPAAEDGGGGSLLTVAFQILVNSLPTDKLTVESVETVNNLISCTVQKIKTALRCHAPST 747
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2446888 2451850 - CrPI670011_05g002600.1 Cre05g0260 496773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g0260 747 Coils Coil 211 231 - -
Cre05g0260 747 MobiDBLite consensus disorder prediction 77 119 - -
Cre05g0260 747 Gene3D - 105 187 - -
Cre05g0260 747 ProSiteProfiles 'Homeobox' domain profile. 110 170 IPR001356 GO:0003677(InterPro)
Cre05g0260 747 SMART START_1 277 495 IPR002913 GO:0008289(InterPro)
Cre05g0260 747 MobiDBLite consensus disorder prediction 1 29 - -
Cre05g0260 747 SUPERFAMILY Bet v1-like 272 495 - -
Cre05g0260 747 ProSiteProfiles START domain profile. 268 498 IPR002913 GO:0008289(InterPro)
Cre05g0260 747 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 99 742 IPR042160 -
Cre05g0260 747 Pfam Homeodomain 113 168 IPR001356 GO:0003677(InterPro)
Cre05g0260 747 CDD homeodomain 117 170 IPR001356 GO:0003677(InterPro)
Cre05g0260 747 SUPERFAMILY Homeodomain-like 101 170 IPR009057 -
Cre05g0260 747 CDD START_ArGLABRA2_like 276 494 - -
Cre05g0260 747 Coils Coil 164 199 - -
Cre05g0260 747 SUPERFAMILY Bet v1-like 513 730 - -
Cre05g0260 747 ProSitePatterns 'Homeobox' domain signature. 145 168 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cre05g0260 747 Gene3D - 275 486 IPR023393 -
Cre05g0260 747 SMART HOX_1 111 174 IPR001356 GO:0003677(InterPro)
Cre05g0260 747 FunFam Homeobox-leucine zipper protein HDG1 100 186 - -
Cre05g0260 747 Pfam START domain 280 494 IPR002913 GO:0008289(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g0260 Cre-Chr5:2446888 Cre09g1114 Cre-Chr9:11791150 1.20E-145 dispersed
Cre05g0260 Cre-Chr5:2446888 Cre05g0978 Cre-Chr5:9008584 8.20E-214 wgd
Cre05g0260 Cre-Chr5:2446888 Cre06g0780 Cre-Chr6:1186091 4.00E-269 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53597 PF01852 START 4.50E-48 CL0209 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g0260 K09338 - csv:101222248 940.258