Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g0279 ATGAGAAACCAACCCTGGTTTGAGGGATTTAAAAAAAAAAAAAAAAAAAAAAAAGATATGGTGAGAGGAAAAACTCAGATGAGGCGAATCGAAAACGCGACAAGTCGGCAAGTAACATTCTCGAAGCGTCGGAATGGGCTGCTGAAAAAAGCCTTTGAGCTCTCAGTTCTTTGTGATGCTGAACTTGCTGTCATCATCTTCTCTTCTAGAGGAAAGCTTTATGAATTTTCAAGCTCAAGCATGCAGGCCACGGTGGGGCGATATCTAAGGCATACAAGATCACAAACCCATCATCTTGAACCTTTAGCTCATCAACACGATTTACAAGCTGTTCAGAATGAGGCTGAAGGTTTGTTGAAGGAGATAGAATCACTTGAAGTTTCAAAGAGGAAATTGTTGGGAGAAGGTCTAGGATCAAGCTCCTATGAAGAACTTCAACAAATAGAACAGCAGCTAGAAAGGAGCTTAGCTCATGTTAGAGCTAGAAAGCACGAGGTTTACAAGGAACAGATTGAACAACTAAGAGAAAAGGAGAAGAACCTGGAAGCTGAGAATGCAAAGCTAGCTAAAAAGTACTTTGTTGAACGTAAGCCTCAACAATCAGCAACTCAGCAGTTAGCAGAAGTTTCAGCTTGTCCAGAAAGTAGTTCCGTTTCAGACGTTGAAACGGAGTTGTTCATTGGCCCTCCCAAGTCCAGGTCCAACTTGAATAATGACGTCAATAAGAAAAAGAGAGCCACAATGTGTGTTGAGGAAGAGTGGGAATCATTGGCTACCCAATGA 783 41.63 MRNQPWFEGFKKKKKKKKDMVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAELAVIIFSSRGKLYEFSSSSMQATVGRYLRHTRSQTHHLEPLAHQHDLQAVQNEAEGLLKEIESLEVSKRKLLGEGLGSSSYEELQQIEQQLERSLAHVRARKHEVYKEQIEQLREKEKNLEAENAKLAKKYFVERKPQQSATQQLAEVSACPESSSVSDVETELFIGPPKSRSNLNNDVNKKKRATMCVEEEWESLATQ 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2591421 2598432 + CrPI670011_05g002790.1 Cre05g0279 496792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g0279 260 ProSiteProfiles MADS-box domain profile. 20 80 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre05g0279 260 ProSitePatterns MADS-box domain signature. 22 76 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre05g0279 260 SMART madsneu2 20 79 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre05g0279 260 Pfam K-box region 104 191 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cre05g0279 260 PANTHER SERUM RESPONSE FACTOR HOMOLOG 20 210 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cre05g0279 260 SUPERFAMILY SRF-like 22 97 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre05g0279 260 CDD MADS_MEF2_like 22 95 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cre05g0279 260 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 29 76 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre05g0279 260 Coils Coil 142 162 - -
Cre05g0279 260 Gene3D - 32 102 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre05g0279 260 Coils Coil 164 191 - -
Cre05g0279 260 ProSiteProfiles K-box domain profile. 108 199 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cre05g0279 260 FunFam Agamous-like MADS-box protein AGL13 32 97 - -
Cre05g0279 260 PRINTS MADS domain signature 42 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre05g0279 260 PRINTS MADS domain signature 57 78 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre05g0279 260 PRINTS MADS domain signature 22 42 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre05g0279 260 Coils Coil 108 135 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g0279 Cre-Chr5:2591421 Cre06g0799 Cre-Chr6:1345125 2.70E-55 dispersed
Cre10g1367 Cre-Chr10:27326804 Cre05g0279 Cre-Chr5:2591421 1.40E-27 transposed
Cre05g0279 Cre-Chr5:2591421 Cre05g0947 Cre-Chr5:8669605 1.30E-28 wgd
Cre05g0279 Cre-Chr5:2591421 Cre09g2199 Cre-Chr9:41090544 1.60E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53600 PF01486 K-box 1.50E-25 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g0279 - - - 0.0