Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g0294 ATGGAGAGCAATCCCGCCGCCTCCGCCGTCGTCGTTAGCAATACCCCAAGCATCCCGCCGGAGAAACGTAACCGTTCCATCTTCGACGTCCCGGCCGACTTCTTTGATTCCTGCAAACTCCTTCGTTCTCCACACTCATACACCTCATCAACCAGCGGCAGCAACAGGGACAGCTCAAGCGCAGAAAACACAGTCGATTCGGAGCAGAACTACAGGGATTTGAAAGAAAGTCCCGTCGCCCACCGATGGACCTGCAACACATGCAAGGCCGAGTTCGAGTCCCTGCTTGACCAGCGTTCGCACTTCAAATCCGACCTTCACCGGTTCAATGTGAAACTAAGCATTGCTGGAAAGAATATTGTGAAGGAGGATGATTTTGATGAGCTGACATCTGATTCTTTCAGAGACTTTGATGTGTCAAGTATTTCTGGATCAGAGGACGAAACAGAGAAGGAGGTTAACTTTCGGAATGAAGGGCCTAAGGGAACAAGTGATACTGCGAACAAGAAGAGGTTGTTTGTTCATCTTCAAACCGGTGAAAGAGCTTCGGTCTGGAAGTGTTTGCTCATAAATGAGTCAGATAATATTTCATACGAAGATGATAAAACATCAATCAGTGGTAATGGCGTTCATGCCCAGTACCTTAGAGAGAATGAAATCATAGCAAGATTAAAATATTTAAATCATGAGCCAAGAGATGGCTCCCATTTGCGGATAGTGTTGCTTGCAAGTGGTGGGCACTTTGCGGGTTGTGTCTTCGATGGAAACATAGTTGTAGCTCATAAAACCTTTCACAGATATGTGGTGAGAGCCAAGTCTGGAAAGAAACAGTCATCAAAAGATGCAAGTGGCAAATCAATCAGTTCCGCTGGGGCTTCACTTCGTCGTCATAATGAACTGGCATTGAAGAAGGAAATTCAAGATCTCCTTGCCGCTTGGAAGTCCTACTTTAATGCTTCATCTTGCGTTTATATTTATGCTCCTTCAAACAATCGGCAATTGCTTTTTAATGGAGACAAGCCTTACTTTAGTGATCAGCATGCTGCTGTTCGGAATATTCCTTTGACTGTTCGAAGGCCTACATTGAAAGAAGCTCGGCGTGTTTATGAACAATTGGTGCAAGTAGTGTATGAAGTAGATGAGAATGAAATATTGTCTACCACTGAGCACGATTCACTGTTAAGCGCAGTTACAACGGACAATGGCACCCGAGGTATAAGTGGACAGGAAGTGATTGGAGATTTGGAGAAGGATGCTTGTACACATCTTGAAGAATCTGTTGAACACCCCAAAACTAGTGAGAGTGAAAGTGAAGTTATTTGTAGAACTACACCTTTACATGAAGCATCACAGTCTGGAAATGCAGATAAGGTTTTGGAACTCCTTGAACAGGGTCTTGATCCTTGCATCAAAGATGAAAGAGGACGTACTCCTTATATGCTAGCAAGTGAGAAGGAAGTCCGAAATAACTTTAGAAGGTTCATGGCTTCAAACCTTGATAAGTGGGATTGGAATGCTGCTAAGGTGCCAAGCGCATTAACCAAGGAAATGGAGGAATCTCAAGCAGCTAAGCAGGCTGAAAAAGATGCCAAGCGAAAGGCTAGAGCAAAGGAGTTGAAAAAATTAAAGAAAGAAAAGGCCAAGAAAGCACAGGCCCTGGATGCTGAATCCCAAAAGGCTGTGAAGCCGGAACAGAGTAGAGGAATCGGCTCTATTTTGAATTCTCGGGCTGAATCAACCAGTGGGAAACTGATTACCAAAGAGATGGCACAGGCTGCTGAACGGGAAAAGAGAGCAGCAGCTGCTGAGAGAAGAATGGCAGCCATGGTCGCAGCTGCAGCCACCAACAATTCCTCGTTGACTACTCCTAACAGCTCGCAGACTAAAAGCGGGTTGGCGGGGGATGTCAACTGCTCCTGCTGCGGTACTTCGCTGGCCGAACCGCAAGTTCGCAGAGCAGCTCTGAAAATGTCTGTTACTTTGCACACAAATCTCGGAGACATCAAGTGCGAGATTTTTTGCGATGAAGTCCCCAAGTCTGCCGAGAACTTTTTGGCATTGTGTGCAAGTGGTTACTATGATGGAACCATATTCCATCGCAATATCAAAGGTTTTATGATACAAGGTGGAGACCCAACCGGCACGGGAAAAGGGGGAACCAGCATATGGGGCAAGAAGTTTAATGACGAGATAAAAGAGTCACTCAAGCACAATGCAAGAGGGATATTATCAATGGCTAATAGTGGCGCAAATACGAATGGAAGCCAATTTTTTATAACTTATGCAAAGCAGCCACATTTAAATGGATTATATACTGTTTTTGGTAGAGTGATTCATGGGTTCGAAGTACTTGATATCATGGAAAAGTATTCAAGTGGCATGAAGCTTAGTCTTAAGAGCTGCTATGATCAGCTGGTTTCAAAATCCCCGCCAAATTCTCAGTCTCCATCTCCATCTCTCAGACTCACAACAATGGAGGCCGAAGATGCTAATCCTGAAACCACCCCCAGCCCTCCCAAACCCAATGAGTTGCCCAAAGATGGCACTAGCTCCCAATCAATCTCCTTCCAGTTTCCTCCTCCGCCTCCTTCTCCTCCTCCTCCCAACTCTGAAGATGAAACGCGCCCCAAAAAGCGATTGACTCATCGGGAATTCTTCCTCGTAGTCGCCTCCGGCATCGCTGCCCACCCTCTGCAGAAATATGATTCTAAAGTTTGGGGCGTTCTCACTGGCATTTCCGCCACTGCCCGTAAGCGCCAACAGGGTATAAATATTCTTTTGACTGATGATGAACACTGCATCGGTCGATTGGTGCCAGATAGTCGATATCAGATTGACTCTAATTCAGTCAGCGCAAAACATTGCACAATTTATAGGAAAAGCACGGAAGATGGTTCTAGTCCATCAGTTTTCCTCAAAGATACAAGCACAAATGGAACATATATAAACTGGGAGAGGTTCAAGAACAATAGTGAGGGGGCTAAAATCTGCCATGGTGACATCATATCACTTGCTGCAGTTCCACAGCATGAGGCCGCATTTGCATTTGTCTATAGAGAGGTGGGTGCAGTTACTTCATCATCAGGTGGTGCATCTGCAAAAAGAAAAGCAGTGGATAGTGTTGCTGAAAACAAAAGGTTAAAAGGTCTTGGAATTGGTGCTCCTGATGGTCCAATATCTCTTGACGATTTTCGAAGTCTTCAACGATCAAATACGGAGCTTAGGAAGCAGTTGGAGGATCATGTGCTTATGATAGATTCATTGCGTAATGAAAATCGTGTATCCGTGGAGCGCCATGAACTTGAGGTGAAAAAGCTTAAAGAGTCCATATCAAAATCTTATGAAGATCAAATCATTAAGTTGCAGCAGTTGATTGACAATAAACAGAAGGAGCTTGGGGAGGTTCAAAGAATATCCTCTGAACAAAAACATGTTATAGAAGATCTTCAAGAAAGACTTGGTGCTACTGCTCAGTCATGTGATGAAGCAAATGAAATAATAAATAGCCAAAAGGCATCTTTAAGTGAGTTGAAGGTTCAAATTGATGAAGAACGTGATCAGAGACGAGAAGAGCGAGAGAAGGCTGCTGCAGATCTGAAGGCAGCCGTGCAGAAAGCTCATGCAGAGGCTCAAGATGAATTAAAACGCCTTTCTGATGCTACCTCAAGGCGTGAAAGAGAACAGCAAGAAGTAATCAATAAACTTCAGGAAGTTGAGAAAGAACGGTGTTTGCTGGTGGAAACATTGAGGTCCAAGTTGGAGGAGACTAGACAGAAATTAGTCATGTCGGACAATAAAGTTCGCCAGCTAGAATCTCAACTTGGTGAAGAGCACCTATCCTGTACGAATGAAAGAAAAAAGGTTGAAGAGCTTGAACGTGGAATAAAAGAACTGCAGAAAGAGCTTGAGAGTGAAAAGGGAGCAAGAGAAGAGGCTTGGTCTAAGGTATCATCCCTGGAACTTGAAATAAATGCTGCAATACGGGATCTTGATTTTGAGAGGAGGAGGCTAAAAGGTGCCAGGGAAAGAATTATGCTTCGGGAAACACAGCTACGAGCGTTCTATTCTACCACCGAAGAAATTTCAGCTTTGTTTGCCAAGCAGCAGGAGCAATTGAAAGCAATGCAAAGGACTCTAGAAGATGAAGAGAATTATGAAAACACTTCTTTTGATTTTGATCTCAATGTGCCCCCTGAGCCTGCAAATGGAAATTTACTTGGAGGAAATTTGCGGATGAACTATTGTAACAAATCTGCCAAAGCTAGTTCGGCTACATCAGTTCAGAGGTTCGAGCCAGTCCAAGGTGAGACGTCTACTGACGAAGCCAGCACTGAAAAGCACGACTGTGATTTCAGAAGTCAAGAATGTCAGAATACTCAAGAGGCAGAATTCACAAGTGTTGATGCTGGTGTTAAGGGAGGTTTTGGTTCTGACATTGATGGCGTTGGCACGGCTCCTGTTTTGGAAGGAGACATAGTTGGGACCGAACGGGTTCTTGAAACAGAGAGTCCTGGAGTTGATGGTGATCGAACCATGGATTTGAACAAGGGTATGGCCTTAGCCGGTGAAACAATGGGTGTTGATGATGAAGGTGGTGTAGGAGAGGTGGACGAGCAGGCTAAGATGGTTCATCCGGAAGCTTATTGTCAGTCTCAGACAAATCAAACATGCGATGATGTCGACGCGATGGAAGACACTGAAGCTGGTGGAACAGTCAGAACTGCAGACCTCTTAGCTTCTGAAGTTGCTGGGAGCTGGGCTTCCAGTACTGTGCCATCAGTTCACGGTGAGAATGAGTCTCAAAGAAGCAAAGGCAATGAGGTAGAAGGTGGTGGAACTCTTCACGACTCCAACAGCCCGGTCACAGGGAGTCAAAGTACTCTTTTCAAGCCTGTTGCAACAAAATGGAACTCTGAGCATCAAACTTTAAGCGAGATGATCAGAATTGTTGCTCCTGAATCAGAACAGTTTTTTTGCTCTACGAAGGATGGGCCTGAGGGGGAAGAGGACGCTGCATCTGGCTCAGATACAGAAAATTGCTCAGAGAATGACGACGATGCCCACGATAACAATGAAACCACAACCAAGGAAGGGAGAGTCTCAGATTCAGAAACTCAAGGAGTCGATGTTGATGTAATGGATCCAAAACTAGATGATCCAATGGATGAAGATGATGAAGATGATGAAGACACGCAAGAAGATTCTGTAGGATAA 5214 44.73 MESNPAASAVVVSNTPSIPPEKRNRSIFDVPADFFDSCKLLRSPHSYTSSTSGSNRDSSSAENTVDSEQNYRDLKESPVAHRWTCNTCKAEFESLLDQRSHFKSDLHRFNVKLSIAGKNIVKEDDFDELTSDSFRDFDVSSISGSEDETEKEVNFRNEGPKGTSDTANKKRLFVHLQTGERASVWKCLLINESDNISYEDDKTSISGNGVHAQYLRENEIIARLKYLNHEPRDGSHLRIVLLASGGHFAGCVFDGNIVVAHKTFHRYVVRAKSGKKQSSKDASGKSISSAGASLRRHNELALKKEIQDLLAAWKSYFNASSCVYIYAPSNNRQLLFNGDKPYFSDQHAAVRNIPLTVRRPTLKEARRVYEQLVQVVYEVDENEILSTTEHDSLLSAVTTDNGTRGISGQEVIGDLEKDACTHLEESVEHPKTSESESEVICRTTPLHEASQSGNADKVLELLEQGLDPCIKDERGRTPYMLASEKEVRNNFRRFMASNLDKWDWNAAKVPSALTKEMEESQAAKQAEKDAKRKARAKELKKLKKEKAKKAQALDAESQKAVKPEQSRGIGSILNSRAESTSGKLITKEMAQAAEREKRAAAAERRMAAMVAAAATNNSSLTTPNSSQTKSGLAGDVNCSCCGTSLAEPQVRRAALKMSVTLHTNLGDIKCEIFCDEVPKSAENFLALCASGYYDGTIFHRNIKGFMIQGGDPTGTGKGGTSIWGKKFNDEIKESLKHNARGILSMANSGANTNGSQFFITYAKQPHLNGLYTVFGRVIHGFEVLDIMEKYSSGMKLSLKSCYDQLVSKSPPNSQSPSPSLRLTTMEAEDANPETTPSPPKPNELPKDGTSSQSISFQFPPPPPSPPPPNSEDETRPKKRLTHREFFLVVASGIAAHPLQKYDSKVWGVLTGISATARKRQQGINILLTDDEHCIGRLVPDSRYQIDSNSVSAKHCTIYRKSTEDGSSPSVFLKDTSTNGTYINWERFKNNSEGAKICHGDIISLAAVPQHEAAFAFVYREVGAVTSSSGGASAKRKAVDSVAENKRLKGLGIGAPDGPISLDDFRSLQRSNTELRKQLEDHVLMIDSLRNENRVSVERHELEVKKLKESISKSYEDQIIKLQQLIDNKQKELGEVQRISSEQKHVIEDLQERLGATAQSCDEANEIINSQKASLSELKVQIDEERDQRREEREKAAADLKAAVQKAHAEAQDELKRLSDATSRREREQQEVINKLQEVEKERCLLVETLRSKLEETRQKLVMSDNKVRQLESQLGEEHLSCTNERKKVEELERGIKELQKELESEKGAREEAWSKVSSLELEINAAIRDLDFERRRLKGARERIMLRETQLRAFYSTTEEISALFAKQQEQLKAMQRTLEDEENYENTSFDFDLNVPPEPANGNLLGGNLRMNYCNKSAKASSATSVQRFEPVQGETSTDEASTEKHDCDFRSQECQNTQEAEFTSVDAGVKGGFGSDIDGVGTAPVLEGDIVGTERVLETESPGVDGDRTMDLNKGMALAGETMGVDDEGGVGEVDEQAKMVHPEAYCQSQTNQTCDDVDAMEDTEAGGTVRTADLLASEVAGSWASSTVPSVHGENESQRSKGNEVEGGGTLHDSNSPVTGSQSTLFKPVATKWNSEHQTLSEMIRIVAPESEQFFCSTKDGPEGEEDAASGSDTENCSENDDDAHDNNETTTKEGRVSDSETQGVDVDVMDPKLDDPMDEDDEDDEDTQEDSVG 1737
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2712998 2731340 + CrPI670011_05g002940.1 Cre05g0294 496807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g0294 1737 Coils Coil 1365 1385 - -
Cre05g0294 1737 MobiDBLite consensus disorder prediction 1684 1715 - -
Cre05g0294 1737 MobiDBLite consensus disorder prediction 1716 1737 - -
Cre05g0294 1737 ProSiteProfiles Ankyrin repeat region circular profile. 441 473 - -
Cre05g0294 1737 Pfam FHA domain 933 1004 IPR000253 GO:0005515(InterPro)
Cre05g0294 1737 Coils Coil 1096 1141 - -
Cre05g0294 1737 MobiDBLite consensus disorder prediction 140 166 - -
Cre05g0294 1737 Coils Coil 1316 1343 - -
Cre05g0294 1737 MobiDBLite consensus disorder prediction 1658 1737 - -
Cre05g0294 1737 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 693 710 IPR020892 GO:0003755(InterPro)|GO:0006457(InterPro)
Cre05g0294 1737 SUPERFAMILY Cyclophilin-like 659 792 IPR029000 -
Cre05g0294 1737 MobiDBLite consensus disorder prediction 1 24 - -
Cre05g0294 1737 MobiDBLite consensus disorder prediction 1425 1439 - -
Cre05g0294 1737 ProSiteProfiles Forkhead-associated (FHA) domain profile. 932 987 IPR000253 GO:0005515(InterPro)
Cre05g0294 1737 MobiDBLite consensus disorder prediction 520 534 - -
Cre05g0294 1737 ProSitePatterns Zinc finger C2H2 type domain signature. 85 107 IPR013087 -
Cre05g0294 1737 SUPERFAMILY SMAD/FHA domain 887 1013 IPR008984 GO:0005515(InterPro)
Cre05g0294 1737 MobiDBLite consensus disorder prediction 515 567 - -
Cre05g0294 1737 Gene3D - 644 803 IPR029000 -
Cre05g0294 1737 MobiDBLite consensus disorder prediction 45 67 - -
Cre05g0294 1737 FunFam Peptidyl-prolyl cis-trans isomerase 657 803 - -
Cre05g0294 1737 Pfam Bacteroidetes VLRF1 release factor 239 375 IPR041175 -
Cre05g0294 1737 MobiDBLite consensus disorder prediction 1 21 - -
Cre05g0294 1737 MobiDBLite consensus disorder prediction 1612 1626 - -
Cre05g0294 1737 MobiDBLite consensus disorder prediction 1203 1225 - -
Cre05g0294 1737 MobiDBLite consensus disorder prediction 856 870 - -
Cre05g0294 1737 MobiDBLite consensus disorder prediction 826 876 - -
Cre05g0294 1737 MobiDBLite consensus disorder prediction 141 158 - -
Cre05g0294 1737 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 698 710 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cre05g0294 1737 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 672 687 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cre05g0294 1737 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 769 784 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cre05g0294 1737 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 756 768 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cre05g0294 1737 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 741 756 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cre05g0294 1737 MobiDBLite consensus disorder prediction 1588 1626 - -
Cre05g0294 1737 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 659 793 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cre05g0294 1737 MobiDBLite consensus disorder prediction 45 73 - -
Cre05g0294 1737 Coils Coil 1246 1273 - -
Cre05g0294 1737 Coils Coil 1146 1230 - -
Cre05g0294 1737 SUPERFAMILY Ankyrin repeat 443 495 IPR036770 -
Cre05g0294 1737 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 662 827 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cre05g0294 1737 Gene3D - 909 1048 - -
Cre05g0294 1737 MobiDBLite consensus disorder prediction 1425 1447 - -
Cre05g0294 1737 Coils Coil 517 559 - -
Cre05g0294 1737 Coils Coil 1281 1308 - -
Cre05g0294 1737 ProSiteProfiles Ankyrin repeat profile. 441 473 IPR002110 GO:0005515(InterPro)
Cre05g0294 1737 SMART FHA_2 931 987 IPR000253 GO:0005515(InterPro)
Cre05g0294 1737 CDD Cyclophilin_PPIL3_like 657 795 - -
Cre05g0294 1737 Gene3D - 432 553 IPR036770 -
Cre05g0294 1737 PANTHER SMAD/FHA DOMAIN-CONTAINING PROTEIN 825 1737 - -
Cre05g0294 1737 Coils Coil 1071 1091 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g0294 Cre-Chr5:2712998 Cre10g1992 Cre-Chr10:34607109 7.60E-37 dispersed
Cre05g0294 Cre-Chr5:2712998 Cre04g1378 Cre-Chr4:32602234 1.30E-41 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g0294 - - - 0.0