Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g0299 ATGGATCGAGCCACCGCCGCACACGGCCGTCCGCTTCCGCCGCCGTTCATTTCAAGAAACCTCCATCTCAATCCCCACCACCATTTCCTCCACCAAAACTCCGATCAACAGCACAATGGAAATAGTAGCTCCGGCGGCGACGGCGGCCGAGACGGTGAGGTCTTGAGACGACCACGAGGCCGCCCCGCCGGATCGAAGAACAAGCCGAAGCCGCCGATGATAATCACACGTGATAGCGCCAACGCACTCCGGTGCCACGTCATCGAAATCGCCAACGCAAATGACGTGATCGAAACCCTCACGATTTTCGCACGAAAGCGCCAGCGTGGCATTTGCGTGCTGACCGGCGCCGGAGCGGTCACCAACGTCACCCTCAAGCAGCCGGGGGCCGCAGTCGCCGCTGCTGGACCGGTGATCTCTCTGCCGGGGAGATTTGAGATTCTGTCGTTGTCGGGGTCGTTTCTGCCGCCGCCAGCGCCGGCGGCGGCGTCTGGGCTGACCGTGTACTTGTCCGGCGGGCAGGGGCAGGTGGTAGGAGGAAGCGTGGTGGGCCCACTTTTGAGTTCGGGGCCAGTGGTGATTACGGCTGCTTCATTCGGAAACGCAGCGTACGAGAGGCTACCGGTGGAGGATGACGACGTGGAAGCGGCAACAGCGGCGGATGCCGGAAGTAGTCCGATCAGGTCACCGGAAAACGCCGTGCAACAGCAACAATTTTTGCCGGAACTTCATGGATTGGCGCCGCATCTAATGAACACGTGTCAATTGCCGACGGAACCCTACTGGAGCACAGGTCGTACTCCACCATTTTAG 813 60.76 MDRATAAHGRPLPPPFISRNLHLNPHHHFLHQNSDQQHNGNSSSGGDGGRDGEVLRRPRGRPAGSKNKPKPPMIITRDSANALRCHVIEIANANDVIETLTIFARKRQRGICVLTGAGAVTNVTLKQPGAAVAAAGPVISLPGRFEILSLSGSFLPPPAPAAASGLTVYLSGGQGQVVGGSVVGPLLSSGPVVITAASFGNAAYERLPVEDDDVEAATAADAGSSPIRSPENAVQQQQFLPELHGLAPHLMNTCQLPTEPYWSTGRTPPF 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2770840 2771652 - CrPI670011_05g002990.1 Cre05g0299 496812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g0299 270 FunFam AT-hook motif nuclear-localized protein 83 215 - -
Cre05g0299 270 MobiDBLite consensus disorder prediction 1 74 - -
Cre05g0299 270 Pfam Plants and Prokaryotes Conserved (PCC) domain 84 199 IPR005175 -
Cre05g0299 270 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 34 225 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0010228(PANTHER)
Cre05g0299 270 SUPERFAMILY AF0104/ALDC/Ptd012-like 80 213 - -
Cre05g0299 270 CDD DUF296 84 155 IPR005175 -
Cre05g0299 270 Gene3D - 83 218 - -
Cre05g0299 270 ProSiteProfiles PPC domain profile profile. 80 220 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g0299 Cre-Chr5:2770840 Cre09g2174 Cre-Chr9:40811400 3.40E-69 dispersed
Cre05g0299 Cre-Chr5:2770840 Cre05g0305 Cre-Chr5:2836686 1.50E-16 proximal
Cre05g0299 Cre-Chr5:2770840 Cre06g0808 Cre-Chr6:1427099 3.80E-68 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g0299 - - - 0.0