Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g0303 ATGAGCACGAGGCGCAGCCGCGGAAGTTGCCCAGAAGGCAAAGGTGGTGGACCGTGTGGGGCGTGCAAGTTTCTGCGGAGGAAGTGTATGCCAGAGTGTATATTTGCACCCTACTTCGACTCCGAACAAGGTACAACTCATTTTGCAGCCGTGCACAAGGTGTTCGGAGCCAGCAATGTGTCGAAGATGCTTCTACATATTCCTGAACACAAACGGCTCGACGCAGCTATAACTATATGTTACGAGGCACAAGCTCGAGTCAGAGAGCCAGTTTTTGGCTGTGTTGCTCATATCTTTGCCCTCCAACAACAGGCTGCAAGGTTGCAAGTAGAGATCTCGTATTTGCAAGCGTACCTAGCAACATCTGAGCTTCCAAGACCCGCACCCAATCTACAGGCACAGCCACCAGCTCTAGTCAAGAAGCCAACTCTATCCTCAATTGTAAACCTTTCATCAGATTGCCCTTCTTTTCCTGCTGAATCAGATCTTTCTCGACTTCTCGATCCCATCGAGCAAGCTTCACGGCCAAAGTTGCAGTCTCCCTTGGAATTGTCCCAAATTGGAAGCAACAGTTTCCCATCCATGGGCAGCGTTGATCAACAAATCGTCCAAAAACAACTGGCCTCAATGCAACACATTGGTGCCTCGCTATTTCCGTGCGTCCCTAAACGAGCCTAA 678 49.85 MSTRRSRGSCPEGKGGGPCGACKFLRRKCMPECIFAPYFDSEQGTTHFAAVHKVFGASNVSKMLLHIPEHKRLDAAITICYEAQARVREPVFGCVAHIFALQQQAARLQVEISYLQAYLATSELPRPAPNLQAQPPALVKKPTLSSIVNLSSDCPSFPAESDLSRLLDPIEQASRPKLQSPLELSQIGSNSFPSMGSVDQQIVQKQLASMQHIGASLFPCVPKRA 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2809150 2810154 - CrPI670011_05g003030.1 Cre05g0303 496816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g0303 225 ProSiteProfiles LOB domain profile. 17 119 IPR004883 -
Cre05g0303 225 PANTHER LOB DOMAIN CONTAINING PROTEIN 14 141 - GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER)
Cre05g0303 225 Pfam Lateral organ boundaries (LOB) domain 18 116 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g0303 Cre-Chr5:2809150 Cre07g0455 Cre-Chr7:2314966 2.30E-39 dispersed
Cre05g0303 Cre-Chr5:2809150 Cre06g0810 Cre-Chr6:1446945 2.80E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53602 PF03195 LOB 1.40E-36 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g0303 K21994 - csv:101216934 394.045