Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g0305 ATGGAAGAGAGAGAAGCCATAAATGCAGGAGTAACAGTGATAGGAGCCGAAGCTCCGTCGGCTTATCATGTGGCTCCGAGAACCGAGAACCCGCCGGCCGGCGGCGGTTCGCCAACCGTCGCTGCCTCGCCGGTAAGCGTGGGGCTACCCGGAAGTGGAACCACAGGGAAAAAGAAGCGGGGTAGACCTAGAAAGTACGGCCCGGATGGAACGGTAACCATGGCATTGTCGCCATTGCCGCTTTCTTCCTCAGCTCCGGCAGCCGGTGGCTTCTCCATTACCAAGCGGGGGAAGGGCCGGCTCGGCGGCTCCGAATTCAAACATCACAAGAAAATGGGAATGGAATATATAGGAGAGTGGAATGCGTGTTCTGTCGGTACAAATTTCATGCCTCATATCATCACGGTCAATGCTGGCGAGGATGTCACTATGAAGATCATATCATTTTCCCAACAAGGCCCTCGAGCAATCTGTATTCTTTCTGCTAATGGAGTAATTTCGAATGTCACTCTTCGGCAGCCGGATTCTTCGGGTGGTACTTTAACATATGAGGGCCGTTTTGAAATACTTTCTTTATCTGGATCATTCATGCCTACTGAAAATCAAGGAACAAGAAGCAGGTCGGGTGGGATGAGCGTCTCCTTGGCTAGCCCTGATGGTCGTGTTGTTGGGGGAGGGGTAGCTGGTTTACTCATAGCTGCAAGCCCTGTACAGGTTGTGGTAGGGAGTTTTCTACCAACTAGCCAACAGGAACAGAAGGTAAAGAAACAGAAGCCCGAGTCGGTACCAGCTGCAGCCCCTGTTGCAGTCCCGAGCACGGCACCAGCCACGACTGTGCCGGCTTCGAATGCAGATACAGATGACAGTTTAAATGGGAATGGTCTGCAAAATGCCGGGTCGTTAAAACCGGCCAGTTTTGCTCCTTCACCTTTCCAGAGAGACAATTGGGGTACCAATGCTGCTGTGCATTCCTTGCAGGAGCCGAGAAATTCCGCTACCGACATCAATATTTCGCTGCCAGGCTAA 1026 52.24 MEEREAINAGVTVIGAEAPSAYHVAPRTENPPAGGGSPTVAASPVSVGLPGSGTTGKKKRGRPRKYGPDGTVTMALSPLPLSSSAPAAGGFSITKRGKGRLGGSEFKHHKKMGMEYIGEWNACSVGTNFMPHIITVNAGEDVTMKIISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMPTENQGTRSRSGGMSVSLASPDGRVVGGGVAGLLIAASPVQVVVGSFLPTSQQEQKVKKQKPESVPAAAPVAVPSTAPATTVPASNADTDDSLNGNGLQNAGSLKPASFAPSPFQRDNWGTNAAVHSLQEPRNSATDINISLPG 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2836686 2840849 + CrPI670011_05g003050.1 Cre05g0305 496818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g0305 341 MobiDBLite consensus disorder prediction 311 341 - -
Cre05g0305 341 Gene3D - 131 260 - -
Cre05g0305 341 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 13 284 IPR039605 GO:0003680(InterPro)
Cre05g0305 341 MobiDBLite consensus disorder prediction 275 303 - -
Cre05g0305 341 FunFam AT-hook motif nuclear-localized protein 1-like 131 261 - -
Cre05g0305 341 Pfam Plants and Prokaryotes Conserved (PCC) domain 131 244 IPR005175 -
Cre05g0305 341 CDD DUF296 131 244 IPR005175 -
Cre05g0305 341 SUPERFAMILY AF0104/ALDC/Ptd012-like 129 250 - -
Cre05g0305 341 MobiDBLite consensus disorder prediction 248 341 - -
Cre05g0305 341 MobiDBLite consensus disorder prediction 18 71 - -
Cre05g0305 341 ProSiteProfiles PPC domain profile profile. 126 266 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g0305 Cre-Chr5:2836686 Cre11g0545 Cre-Chr11:2433570 1.60E-76 dispersed
Cre05g0299 Cre-Chr5:2770840 Cre05g0305 Cre-Chr5:2836686 1.50E-16 proximal
Cre04g1066 Cre-Chr4:29320749 Cre05g0305 Cre-Chr5:2836686 4.00E-16 transposed
Cre05g0305 Cre-Chr5:2836686 Cre05g0923 Cre-Chr5:8458372 8.40E-73 wgd
Cre05g0305 Cre-Chr5:2836686 Cre09g2170 Cre-Chr9:40734516 2.40E-88 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g0305 - - - 0.0